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The map label for this gene is ugpB [H]

Identifier: 86609911

GI number: 86609911

Start: 2572676

End: 2574028

Strand: Direct

Name: ugpB [H]

Synonym: CYB_2477

Alternate gene names: 86609911

Gene position: 2572676-2574028 (Clockwise)

Preceding gene: 86609909

Following gene: 86609912

Centisome position: 84.44

GC content: 57.8

Gene sequence:

>1353_bases
ATGAATACCCGTCGTACTTTCCTGGCTGTTGCGGCTGGCCTGGTGGCTGCGTCTGCTGCTGCTCTTCTGGCTGCCGACAG
CTTTGCTCAGTCTCCTGCCGAAGTCAAAGTTTGGATTGCCTTTACCGATAACCGCCTGGATTGGGCCCGCGGAAAAGCGG
AAGAATTCAACAAGCAATTTCCTCAATACAAAGTTACGGTCGAAGGCTACGGCAACTACGAAGAAATTCAGCAAGCCACC
GACCTGGCCATTCAACAAAATGCTGCTCCTTCGGTGGTGCAGTGGTTTGAGGTGGGCACCCAACGGGCACGGGATTTTGG
TTACTTCAAGTCCATTGCCGAGGCTCTGGGCAATCGCACCGAAGTGAACGGGATCCCAGTGAATTTCGACGATTTTATCG
AGCCGGTGGTGAGCTACTACACCCTGGATGGCAAATTTACCTCCATGCCCTGGAACAGCTCCAGCCCCATTCTCTACTCC
AACACGGCCATCTTGAAGAAGGCAGGGATCGAAAAGCCGCCGGCCACCTGGCAAGAGCTGGAGGCTGCTTGTCAAAAGAT
CATGGCCCTCCCCGACGCTCCCCAGGGCTGTGTGACCTGGCCCAATCACGGCTGGTTCTACGAGCAGTGGATGGCCCAGC
AGAATGCCCTCTTGGCCAACAACGACAATGGCCGTGCCGCCCGTGCCACCCAGGTCTTTTTGGACTCGGAGCCGTCAATT
GCCATCGCCACCTGGTGGAAAGGGATGTATGACAAAGGCTACTACATCTACAGCGGCAAGCAGCGGGATTGGGCAGCCAC
CGAGCAGGCCATCCAGACCGGTACCGTCGCCATGGCCATCACCAGCAGCGCCGATGCCGCCAACATCACCAACGCTGCCA
AGCAAAACAACATCGAGCTGGTCACCACCCGCATGCCCTACAACGCCGACAAGGGTTGGACGGGGAACTTGATCGGGGGA
GCCAGCCTCTGGCTGGTGAAGGATCTGCCCAAGGAGGTGGAAGAGGGGGCGCTGACCTTCATGCTGTGGCTCAATAACAC
CGAAAATGCTGCCGAGTGGCACCAAGTGACCGGCTACTTGCCCATTCGGAAAAGCTCGGTAGCCTTGCTGGAGTCGAAGG
GCTGGTTCAAGGAAAACCCCAACTTCTTCACCGCCAGCGACCAAATCAACAATTCCAAGGTGACCCCTGCCACTCGGGGG
GCGCTGCTGGGGGCCTTCCCTGAGATTCGCAACGTGGTAACCCAAACCATGGAGGATCTCATGGTGAAGGGCGGGGATCC
AGCCCAGGCTATGGCCAAGGCCAACCAGGAGGCCAACCGCCTTCTGGCCGAGTACAACTCCCTTTACCAGTAG

Upstream 100 bases:

>100_bases
GGGTTCACCTCCCGAGGGGATCCCAGCCAGACATAACCTGCTCTTAATGTCGGTGCTGTAATCTCAGAGGTGCCTTTAGC
GAATGCGACTGCATTTTTCT

Downstream 100 bases:

>100_bases
CCCCAGTGTCGATGGGCTGACGGTGTCATTGAGGGATGGGGGTGGGCGGCAGCCTGCCCCTTTCCGGGCTTTGATAAGGC
TCTTGTGAAGAGCAAAGCCG

Product: glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MNTRRTFLAVAAGLVAASAAALLAADSFAQSPAEVKVWIAFTDNRLDWARGKAEEFNKQFPQYKVTVEGYGNYEEIQQAT
DLAIQQNAAPSVVQWFEVGTQRARDFGYFKSIAEALGNRTEVNGIPVNFDDFIEPVVSYYTLDGKFTSMPWNSSSPILYS
NTAILKKAGIEKPPATWQELEAACQKIMALPDAPQGCVTWPNHGWFYEQWMAQQNALLANNDNGRAARATQVFLDSEPSI
AIATWWKGMYDKGYYIYSGKQRDWAATEQAIQTGTVAMAITSSADAANITNAAKQNNIELVTTRMPYNADKGWTGNLIGG
ASLWLVKDLPKEVEEGALTFMLWLNNTENAAEWHQVTGYLPIRKSSVALLESKGWFKENPNFFTASDQINNSKVTPATRG
ALLGAFPEIRNVVTQTMEDLMVKGGDPAQAMAKANQEANRLLAEYNSLYQ

Sequences:

>Translated_450_residues
MNTRRTFLAVAAGLVAASAAALLAADSFAQSPAEVKVWIAFTDNRLDWARGKAEEFNKQFPQYKVTVEGYGNYEEIQQAT
DLAIQQNAAPSVVQWFEVGTQRARDFGYFKSIAEALGNRTEVNGIPVNFDDFIEPVVSYYTLDGKFTSMPWNSSSPILYS
NTAILKKAGIEKPPATWQELEAACQKIMALPDAPQGCVTWPNHGWFYEQWMAQQNALLANNDNGRAARATQVFLDSEPSI
AIATWWKGMYDKGYYIYSGKQRDWAATEQAIQTGTVAMAITSSADAANITNAAKQNNIELVTTRMPYNADKGWTGNLIGG
ASLWLVKDLPKEVEEGALTFMLWLNNTENAAEWHQVTGYLPIRKSSVALLESKGWFKENPNFFTASDQINNSKVTPATRG
ALLGAFPEIRNVVTQTMEDLMVKGGDPAQAMAKANQEANRLLAEYNSLYQ
>Mature_450_residues
MNTRRTFLAVAAGLVAASAAALLAADSFAQSPAEVKVWIAFTDNRLDWARGKAEEFNKQFPQYKVTVEGYGNYEEIQQAT
DLAIQQNAAPSVVQWFEVGTQRARDFGYFKSIAEALGNRTEVNGIPVNFDDFIEPVVSYYTLDGKFTSMPWNSSSPILYS
NTAILKKAGIEKPPATWQELEAACQKIMALPDAPQGCVTWPNHGWFYEQWMAQQNALLANNDNGRAARATQVFLDSEPSI
AIATWWKGMYDKGYYIYSGKQRDWAATEQAIQTGTVAMAITSSADAANITNAAKQNNIELVTTRMPYNADKGWTGNLIGG
ASLWLVKDLPKEVEEGALTFMLWLNNTENAAEWHQVTGYLPIRKSSVALLESKGWFKENPNFFTASDQINNSKVTPATRG
ALLGAFPEIRNVVTQTMEDLMVKGGDPAQAMAKANQEANRLLAEYNSLYQ

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=400, Percent_Identity=33, Blast_Score=182, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49786; Mature: 49786

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRRTFLAVAAGLVAASAAALLAADSFAQSPAEVKVWIAFTDNRLDWARGKAEEFNKQF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHCCCHHHHHHCC
PQYKVTVEGYGNYEEIQQATDLAIQQNAAPSVVQWFEVGTQRARDFGYFKSIAEALGNRT
CCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EVNGIPVNFDDFIEPVVSYYTLDGKFTSMPWNSSSPILYSNTAILKKAGIEKPPATWQEL
CCCCCCCCHHHHHHHHHHHEEECCEEEECCCCCCCCEEECCCHHHHHCCCCCCCCCHHHH
EAACQKIMALPDAPQGCVTWPNHGWFYEQWMAQQNALLANNDNGRAARATQVFLDSEPSI
HHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCCE
AIATWWKGMYDKGYYIYSGKQRDWAATEQAIQTGTVAMAITSSADAANITNAAKQNNIEL
EEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHCCCEEE
VTTRMPYNADKGWTGNLIGGASLWLVKDLPKEVEEGALTFMLWLNNTENAAEWHQVTGYL
EEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHEEE
PIRKSSVALLESKGWFKENPNFFTASDQINNSKVTPATRGALLGAFPEIRNVVTQTMEDL
EECCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHCHHHHCCHHHHHHHHHHHHHH
MVKGGDPAQAMAKANQEANRLLAEYNSLYQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTRRTFLAVAAGLVAASAAALLAADSFAQSPAEVKVWIAFTDNRLDWARGKAEEFNKQF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHCCCHHHHHHCC
PQYKVTVEGYGNYEEIQQATDLAIQQNAAPSVVQWFEVGTQRARDFGYFKSIAEALGNRT
CCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EVNGIPVNFDDFIEPVVSYYTLDGKFTSMPWNSSSPILYSNTAILKKAGIEKPPATWQEL
CCCCCCCCHHHHHHHHHHHEEECCEEEECCCCCCCCEEECCCHHHHHCCCCCCCCCHHHH
EAACQKIMALPDAPQGCVTWPNHGWFYEQWMAQQNALLANNDNGRAARATQVFLDSEPSI
HHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCEEEECCCCCEEEEEEEEECCCCCE
AIATWWKGMYDKGYYIYSGKQRDWAATEQAIQTGTVAMAITSSADAANITNAAKQNNIEL
EEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHCCCEEE
VTTRMPYNADKGWTGNLIGGASLWLVKDLPKEVEEGALTFMLWLNNTENAAEWHQVTGYL
EEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHEEE
PIRKSSVALLESKGWFKENPNFFTASDQINNSKVTPATRGALLGAFPEIRNVVTQTMEDL
EECCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCHHHCHHHHCCHHHHHHHHHHHHHH
MVKGGDPAQAMAKANQEANRLLAEYNSLYQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA