| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yrrL [H]
Identifier: 86609734
GI number: 86609734
Start: 2397587
End: 2398834
Strand: Direct
Name: yrrL [H]
Synonym: CYB_2293
Alternate gene names: 86609734
Gene position: 2397587-2398834 (Clockwise)
Preceding gene: 86609733
Following gene: 86609735
Centisome position: 78.7
GC content: 60.42
Gene sequence:
>1248_bases GTGGTTGGCTTGCTAACTGCAGGGCTACTAAAAGCCCGCTCCGTACCGCCTAGCGGTTGGTGTCGGGTAGTTTACGTTCA GCATTCGGCCCAAAAGGATCCCGTCTTGCCCAAATGCTCTGCTGCCCAAGGCGCTATACCCAGGTCACCCCATGTTGCTA CGCAACGCTTACGCGAACGCTGGGGTCGGCGTCTTTTGCAGAGCTTGATTTTCCTGTTGGTTCTGGTCGGGGGATTGGGC TACTGGCAGTGGCAGACCTGGCTACAGCCGGTGGGCGGCCCAGAACCGATCCAAGTAACAATCCAGCCGGGCAGCAGCAG CCGTCTGATCGGGCAAAAACTGCGCCAAGCAGGGGTGATTCGCTCAGCTCTGGCTTGGGAGCTGTGGAGCCGCACCTTCG GACGGGATTGGGTGTTTCAGGCGGGCACCTACGCTTTGGATCCCAACCAGGACATGCTGGCCGTGGCCCAGCAACTGCGG CAGGGAAGGATCCTGCAAAGACGTCTGACCATCCCGGAGGGTTGGCGCATCGAGCAAATGGCAGAGGCTCTGGCCCAGCG CAACTGGCTGGCAGCCGATGCCTTCATTGCCGTGACCCGGGTGATTCCCCCCCTCGACTGGCTGCCCCCCAACTTGAGCT CACTAGAAGGCTACCTGTTCCCAGACACCTATCTTTTCCCCATCGAACAGGTGGAGGGATCCCTGCCGGATCGGGAAAAG GCCCAGATGGTGGTCGACGCCATGCTGCAGCGATTTGTCGCGGTGGCCCTGCCCCTGTTTCGCCAGCACACCACTTCCCT GTCTCTGCACGAGTGGGTTACCCTGGCCAGCATTGTGGAGCGGGAGGCCGTGGTGCCGGAAGAACGCGCTTTGATTGCAG GTGTCTTTCTGAACCGGCTTAAGAAAGGGATCCCCCTGGGAGCCGATCCGACGCTGGAGTATGCCTTGAATATCCGGCAA ACCCCAGATCGCCGCCTCACCCTTACGGAGGTGCGCACCCCCTCTCCCTACAACACCTACCTCAACCCGGGCTTGCCCCC CGGCCCCATCGCCAGTCCGGGCTTGGCCAGCCTAAAAGCCGTTTTGCAGCCTGAGCAAACCGACTATCTCTACTTTGTGG CCCGCTACGATGGCACCCACGTTTTCAGCAAAACCCTAGCAGAGCACGAGGCAGCCCAATTGCAAATTATTCAAGAGCGT CGGCAAGCTGCCCAGGGATCCCACCATAGTCCTCAACCCAGTCCTTAG
Upstream 100 bases:
>100_bases GTCGGGAGGAATGCTATAACAATACTGCGGACACCAGAAACGGTTGTTTAAGGCACTGGTAACGGTCGATTGGGGGTGCT GTAAACCACCCCAGAGGCTC
Downstream 100 bases:
>100_bases CCGAGGAGCGGATGGTACACAAACCTTGGTTCAAGCTCCTGCAACCGGATCTGGTGGTGGCCGGCACTGTCTTAAAGTTG CGGGCAGAAGACCTGTGGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MVGLLTAGLLKARSVPPSGWCRVVYVQHSAQKDPVLPKCSAAQGAIPRSPHVATQRLRERWGRRLLQSLIFLLVLVGGLG YWQWQTWLQPVGGPEPIQVTIQPGSSSRLIGQKLRQAGVIRSALAWELWSRTFGRDWVFQAGTYALDPNQDMLAVAQQLR QGRILQRRLTIPEGWRIEQMAEALAQRNWLAADAFIAVTRVIPPLDWLPPNLSSLEGYLFPDTYLFPIEQVEGSLPDREK AQMVVDAMLQRFVAVALPLFRQHTTSLSLHEWVTLASIVEREAVVPEERALIAGVFLNRLKKGIPLGADPTLEYALNIRQ TPDRRLTLTEVRTPSPYNTYLNPGLPPGPIASPGLASLKAVLQPEQTDYLYFVARYDGTHVFSKTLAEHEAAQLQIIQER RQAAQGSHHSPQPSP
Sequences:
>Translated_415_residues MVGLLTAGLLKARSVPPSGWCRVVYVQHSAQKDPVLPKCSAAQGAIPRSPHVATQRLRERWGRRLLQSLIFLLVLVGGLG YWQWQTWLQPVGGPEPIQVTIQPGSSSRLIGQKLRQAGVIRSALAWELWSRTFGRDWVFQAGTYALDPNQDMLAVAQQLR QGRILQRRLTIPEGWRIEQMAEALAQRNWLAADAFIAVTRVIPPLDWLPPNLSSLEGYLFPDTYLFPIEQVEGSLPDREK AQMVVDAMLQRFVAVALPLFRQHTTSLSLHEWVTLASIVEREAVVPEERALIAGVFLNRLKKGIPLGADPTLEYALNIRQ TPDRRLTLTEVRTPSPYNTYLNPGLPPGPIASPGLASLKAVLQPEQTDYLYFVARYDGTHVFSKTLAEHEAAQLQIIQER RQAAQGSHHSPQPSP >Mature_415_residues MVGLLTAGLLKARSVPPSGWCRVVYVQHSAQKDPVLPKCSAAQGAIPRSPHVATQRLRERWGRRLLQSLIFLLVLVGGLG YWQWQTWLQPVGGPEPIQVTIQPGSSSRLIGQKLRQAGVIRSALAWELWSRTFGRDWVFQAGTYALDPNQDMLAVAQQLR QGRILQRRLTIPEGWRIEQMAEALAQRNWLAADAFIAVTRVIPPLDWLPPNLSSLEGYLFPDTYLFPIEQVEGSLPDREK AQMVVDAMLQRFVAVALPLFRQHTTSLSLHEWVTLASIVEREAVVPEERALIAGVFLNRLKKGIPLGADPTLEYALNIRQ TPDRRLTLTEVRTPSPYNTYLNPGLPPGPIASPGLASLKAVLQPEQTDYLYFVARYDGTHVFSKTLAEHEAAQLQIIQER RQAAQGSHHSPQPSP
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=316, Percent_Identity=31.9620253164557, Blast_Score=144, Evalue=2e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 46399; Mature: 46399
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGLLTAGLLKARSVPPSGWCRVVYVQHSAQKDPVLPKCSAAQGAIPRSPHVATQRLRER CCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH WGRRLLQSLIFLLVLVGGLGYWQWQTWLQPVGGPEPIQVTIQPGSSSRLIGQKLRQAGVI HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH RSALAWELWSRTFGRDWVFQAGTYALDPNQDMLAVAQQLRQGRILQRRLTIPEGWRIEQM HHHHHHHHHHHHCCCCCEEECCCEEECCCHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHH AEALAQRNWLAADAFIAVTRVIPPLDWLPPNLSSLEGYLFPDTYLFPIEQVEGSLPDREK HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCEECCCCEECCHHHHCCCCCCHHH AQMVVDAMLQRFVAVALPLFRQHTTSLSLHEWVTLASIVEREAVVPEERALIAGVFLNRL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH KKGIPLGADPTLEYALNIRQTPDRRLTLTEVRTPSPYNTYLNPGLPPGPIASPGLASLKA HHCCCCCCCCCCHHEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH VLQPEQTDYLYFVARYDGTHVFSKTLAEHEAAQLQIIQERRQAAQGSHHSPQPSP HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MVGLLTAGLLKARSVPPSGWCRVVYVQHSAQKDPVLPKCSAAQGAIPRSPHVATQRLRER CCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH WGRRLLQSLIFLLVLVGGLGYWQWQTWLQPVGGPEPIQVTIQPGSSSRLIGQKLRQAGVI HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH RSALAWELWSRTFGRDWVFQAGTYALDPNQDMLAVAQQLRQGRILQRRLTIPEGWRIEQM HHHHHHHHHHHHCCCCCEEECCCEEECCCHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHH AEALAQRNWLAADAFIAVTRVIPPLDWLPPNLSSLEGYLFPDTYLFPIEQVEGSLPDREK HHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCEECCCCEECCHHHHCCCCCCHHH AQMVVDAMLQRFVAVALPLFRQHTTSLSLHEWVTLASIVEREAVVPEERALIAGVFLNRL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH KKGIPLGADPTLEYALNIRQTPDRRLTLTEVRTPSPYNTYLNPGLPPGPIASPGLASLKA HHCCCCCCCCCCHHEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH VLQPEQTDYLYFVARYDGTHVFSKTLAEHEAAQLQIIQERRQAAQGSHHSPQPSP HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]