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The map label for this gene is dacB [C]

Identifier: 86609729

GI number: 86609729

Start: 2393681

End: 2395045

Strand: Direct

Name: dacB [C]

Synonym: CYB_2287

Alternate gene names: 86609729

Gene position: 2393681-2395045 (Clockwise)

Preceding gene: 86609728

Following gene: 86609730

Centisome position: 78.57

GC content: 61.54

Gene sequence:

>1365_bases
GTGAAAAGTGCTATGCCTGCGGCACCCCATGGTGCTACACAACACTGTTGCTCCGCAACGCTGACGCCACGGCACGAACG
ACATCTGTGGGGCTGGCCCGGTAGGCGGCTGGTTTCGAGCTGGGTTGGACTGTTCTCGGCGGCAATTCTGTTGCTGGGTT
TGTCTCCCCATTCCCAGGCGACGGAGCAGGGATCCCTGCAACCTCAGGTGGAAACTTATCTGGCTCAGTTGGCCGGTCGG
GGGTTTTCGCCCACAGCTCAGGGGGTTTGGCTGCAGATGGAGGATCCTTCGCCTCAGCGGGACAGAATCCTTGTTTTGGG
ACAGCATCAGGGATCCACACCCTTGCCGGCAGCTTCTTTGACCAAGGTGGCAACGACACTGGCCGCTTTGCAGCACTTTG
GCCCACAACATCGCTTTGTAACCCCTTGGCTGACCACCGGCTCGCCAACAGCCGACGGGGTGCTGCAGGGGGATCTCTGG
GTGGTGGGGGGGGAGGATCCCTTGTTTGTCTGGGAGGAAGCCTTCTCCGTCGGCAACCTGCTCAATGCTCATGGGATCCG
CCAGGTGCGCGGGGATCTGGTGGTGGTGGGCCGCTTTTACATGAACTTTTCCCGGGATGTGGCGCAATCGGGATCCCTGT
TGCGGCAGGGGCTGGATGCGCGGCGCTGGCCGCCAGAGGCGGAGGCCCAATTTCAAACCTTACCCCCCGGCACACCCAGA
CCGCAGGTGGAGATCTTGGGTTCGGTGCGGGTTGCCCAGCAGATCCCGCCCGGCGCTCAGGTTTTGCTCAGACATGAGTC
CCCCCCCCTCATTCACCTGGTCAAGCTGATGAACCTCTACAGCAACAACTCCATGGCCGAGATGTTGGCCGATGCGGTGG
GGGGTGCTGACCAGGTGGCCCAAATCGCCCGGGCCATCGCCGGGATCCCGCCCGAAGAGCTACACCTGATCAATGGTTCC
GGGTTGGGGGTGGAAAACCGCATTTCTCCGCGGGCCAATGTAGCTTTGCTTCGAGCCATCCAGTCTCTTCTGGAGGAGCA
GGGGCTCTCTCTTGCCGATGCTTTTGCCGTCGTTGGCCAAGATGTGGGAGTGTTGGAGCGGCGTCTGTTGCCAGGGATCC
TAATTGCCAAGTCGGGCACCTTGAGGAGCGTCAGCACCTTGGCGGGTGTATTGCCAACCGAGCAGGGGGACATCTGGTTT
GCCCTGATGAATGGCGGATCCGATCTGGTCGGCTTTCGCACCCAGCAGGGACAATTCCTCAGCCAGCTCCAGTCCCAATG
GGGATCCCCTGCCACCTTGCCTGAGCGTTGGATCCCTCGCTCTGGGGATACGGGATCCCGCACGGAGCTGAACCCCCGTC
TTTGA

Upstream 100 bases:

>100_bases
ACCCCCCGGCACCATCGATGTAGAGCCTGTGGAAGAGGGTGGCTGGGAATTGACGAGCTGATGCCCCCTCGGTTGCCGGG
ATGTTTAGAGGGTGTTTTCC

Downstream 100 bases:

>100_bases
AACTGGGCGTCAACAGCCCTCAACCCAGAAACCTCGTCCGGCAGGGATCCTCCCCATGGGGCGTACAGGGATCGAACCTG
TGTAAGGCAAATTATGAGTT

Product: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase

Products: NA

Alternate protein names: D-Ala-D-Ala Carboxypeptidase 3 Family; D-Alanyl-D-Alanine Carboxypeptidase; D-Ala-D-Ala Carboxypeptidase; Carboxypeptidase; Serine-Type D-Ala-D-Ala Carboxypeptidase

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MKSAMPAAPHGATQHCCSATLTPRHERHLWGWPGRRLVSSWVGLFSAAILLLGLSPHSQATEQGSLQPQVETYLAQLAGR
GFSPTAQGVWLQMEDPSPQRDRILVLGQHQGSTPLPAASLTKVATTLAALQHFGPQHRFVTPWLTTGSPTADGVLQGDLW
VVGGEDPLFVWEEAFSVGNLLNAHGIRQVRGDLVVVGRFYMNFSRDVAQSGSLLRQGLDARRWPPEAEAQFQTLPPGTPR
PQVEILGSVRVAQQIPPGAQVLLRHESPPLIHLVKLMNLYSNNSMAEMLADAVGGADQVAQIARAIAGIPPEELHLINGS
GLGVENRISPRANVALLRAIQSLLEEQGLSLADAFAVVGQDVGVLERRLLPGILIAKSGTLRSVSTLAGVLPTEQGDIWF
ALMNGGSDLVGFRTQQGQFLSQLQSQWGSPATLPERWIPRSGDTGSRTELNPRL

Sequences:

>Translated_454_residues
MKSAMPAAPHGATQHCCSATLTPRHERHLWGWPGRRLVSSWVGLFSAAILLLGLSPHSQATEQGSLQPQVETYLAQLAGR
GFSPTAQGVWLQMEDPSPQRDRILVLGQHQGSTPLPAASLTKVATTLAALQHFGPQHRFVTPWLTTGSPTADGVLQGDLW
VVGGEDPLFVWEEAFSVGNLLNAHGIRQVRGDLVVVGRFYMNFSRDVAQSGSLLRQGLDARRWPPEAEAQFQTLPPGTPR
PQVEILGSVRVAQQIPPGAQVLLRHESPPLIHLVKLMNLYSNNSMAEMLADAVGGADQVAQIARAIAGIPPEELHLINGS
GLGVENRISPRANVALLRAIQSLLEEQGLSLADAFAVVGQDVGVLERRLLPGILIAKSGTLRSVSTLAGVLPTEQGDIWF
ALMNGGSDLVGFRTQQGQFLSQLQSQWGSPATLPERWIPRSGDTGSRTELNPRL
>Mature_454_residues
MKSAMPAAPHGATQHCCSATLTPRHERHLWGWPGRRLVSSWVGLFSAAILLLGLSPHSQATEQGSLQPQVETYLAQLAGR
GFSPTAQGVWLQMEDPSPQRDRILVLGQHQGSTPLPAASLTKVATTLAALQHFGPQHRFVTPWLTTGSPTADGVLQGDLW
VVGGEDPLFVWEEAFSVGNLLNAHGIRQVRGDLVVVGRFYMNFSRDVAQSGSLLRQGLDARRWPPEAEAQFQTLPPGTPR
PQVEILGSVRVAQQIPPGAQVLLRHESPPLIHLVKLMNLYSNNSMAEMLADAVGGADQVAQIARAIAGIPPEELHLINGS
GLGVENRISPRANVALLRAIQSLLEEQGLSLADAFAVVGQDVGVLERRLLPGILIAKSGTLRSVSTLAGVLPTEQGDIWF
ALMNGGSDLVGFRTQQGQFLSQLQSQWGSPATLPERWIPRSGDTGSRTELNPRL

Specific function: Not Involved In Transpeptidation But Exclusively Catalyzes A Dd-Carboxypeptidase And Dd-Endopeptidase Reaction. [C]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.16.4; 3.4.99.- [C]

Molecular weight: Translated: 48887; Mature: 48887

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAMPAAPHGATQHCCSATLTPRHERHLWGWPGRRLVSSWVGLFSAAILLLGLSPHSQA
CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
TEQGSLQPQVETYLAQLAGRGFSPTAQGVWLQMEDPSPQRDRILVLGQHQGSTPLPAASL
CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHH
TKVATTLAALQHFGPQHRFVTPWLTTGSPTADGVLQGDLWVVGGEDPLFVWEEAFSVGNL
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCEEEECCCCCEEHHHHHHHHHHH
LNAHGIRQVRGDLVVVGRFYMNFSRDVAQSGSLLRQGLDARRWPPEAEAQFQTLPPGTPR
HHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
PQVEILGSVRVAQQIPPGAQVLLRHESPPLIHLVKLMNLYSNNSMAEMLADAVGGADQVA
CHHHHHHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
QIARAIAGIPPEELHLINGSGLGVENRISPRANVALLRAIQSLLEEQGLSLADAFAVVGQ
HHHHHHHCCCHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
DVGVLERRLLPGILIAKSGTLRSVSTLAGVLPTEQGDIWFALMNGGSDLVGFRTQQGQFL
CHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCHHH
SQLQSQWGSPATLPERWIPRSGDTGSRTELNPRL
HHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKSAMPAAPHGATQHCCSATLTPRHERHLWGWPGRRLVSSWVGLFSAAILLLGLSPHSQA
CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
TEQGSLQPQVETYLAQLAGRGFSPTAQGVWLQMEDPSPQRDRILVLGQHQGSTPLPAASL
CCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHH
TKVATTLAALQHFGPQHRFVTPWLTTGSPTADGVLQGDLWVVGGEDPLFVWEEAFSVGNL
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCEEEECCCCCEEHHHHHHHHHHH
LNAHGIRQVRGDLVVVGRFYMNFSRDVAQSGSLLRQGLDARRWPPEAEAQFQTLPPGTPR
HHHCCHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCC
PQVEILGSVRVAQQIPPGAQVLLRHESPPLIHLVKLMNLYSNNSMAEMLADAVGGADQVA
CHHHHHHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
QIARAIAGIPPEELHLINGSGLGVENRISPRANVALLRAIQSLLEEQGLSLADAFAVVGQ
HHHHHHHCCCHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
DVGVLERRLLPGILIAKSGTLRSVSTLAGVLPTEQGDIWFALMNGGSDLVGFRTQQGQFL
CHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCHHH
SQLQSQWGSPATLPERWIPRSGDTGSRTELNPRL
HHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: Preferential cleavage is (Ac)2-L-Lys-D-Ala D-Ala and Also transpeptidation of peptidyl-alanyl moieties that are N-acyl substituents of D-alanine [C]

General reaction: Hydrolase; Acting on peptide bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA