| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is htpX [H]
Identifier: 86609726
GI number: 86609726
Start: 2389874
End: 2392255
Strand: Reverse
Name: htpX [H]
Synonym: CYB_2284
Alternate gene names: 86609726
Gene position: 2392255-2389874 (Counterclockwise)
Preceding gene: 86609727
Following gene: 86609724
Centisome position: 78.52
GC content: 60.03
Gene sequence:
>2382_bases ATGAACGAACAGGAAGTGGTGCAGTGGCTGGAGCAGGCGCTGGCCAATCCCCACCTTAGATTACAGGCCAAAGCCCAACC GCTCCGGGACAGCCCCAAGGCTTATGCCCTTGTCATTATGATCAACCGTCCTGCCGGCCTTGCTCTCAACTATGAGGAGT TGACGGCCTGGTTCCAAAAGGCAATCCCCACTCGTTACCCCCAAGTCAAACGGTTGGCCCTCTACAGCCGCCCCATGGGC CAGCAGGCTGCCGACTGGAAAACTCAGGTGAGGCTGGATCCGGAGCCGACAACGACCAGATGGGATCCCGGGATGGAGTT CTCAGAGAGTCCGGATCTAAGCCGCTACTGCTTTGTCAGCAATCGCCAGTTGCTTACTGCCGACCTTCCTCAGCCGCCTG GTTTGCTCCGCCAGGCGGTTTTGGGTTTTCACAGCCTCACTTCTGGGCAAAAGCAGGAGGTTCTGCCCCTCCTGCCCACC TTGTTTCGCAATCCCAGCACCGTCTCGACGGTGATGCTGTCGGTGGAGGCAGCCCTGTGGCTGGAGCCTCTGAAAAGCCT GAATCCTCACGAGCTGCGTCTATTGAGCGTTTGGCTGAGCCGCTATTGCTTCAACCCCAGCCGCACCCTAGCGGAATTGG ATCCCGCCACCTCAGGTCTCAAAACCGGACAAACCAAGCGCAGCTACCGCGCCCCTCAGGTGGGGGTTTCGCTAATGTTG GCCAGCTTTGCCGGCAACCTGACGGCGGCCTCAGGTGTGACCCTGAGCCTGCTGTTCGGTATGGTGTTTGTGCTTTTCCT GACCGTCTTGGGCAGCTTAGAGGGGGGATTCTCTCTGGGCTCTTTCATCTTCGCCATTCTGCTCACCCTCGCCTTCAATG CCCTGATCTTCTTTTTGTCCCCTTGGCTGATGGACTGGATCCAGCACAGCCTCTATGGCACCGAGTGGGTAAGCTTGGCG GAAATTGGGCGTCGCAGCCCAGAGAGTGCAGAGGTGATTCAACGGGTTTGCCGCCAGTACAAGCTGAAGCAGCCGAAGCT GGGGCTGATCCGCGACCAAAACCCCACTGCTTTTACCTACGGCAGCCTGCCGGACACGGCCCGCATCGTCGTCAGCGAAG GGTTGTTCACCTACTTGGAAGATGAGGAGGTGGCTACAGTTTACGCCCACGAGCTGGGGCATGTGATCCACTGGGATTTC GCCGTCATGACCCTGGCTTCCACGTTGGTGCAGATTCTCTACCTTCTTTACGTCTACATGCGGGATGCGCGCGACAACGG CAAAAGAGGCAGCCTCCGCTCCCTGGCCTTGGTCGCCTACTTTTTCTATGTGGCCGGCTCCTACTTGTTGCTGTATCTGT CGCGGGTGCGGGAGTACTTTGCCGACCACTTTGCTGCCGAAACCACCGGCAACCCCAATGGGCTCTCGCGGGCTTTGGTG AAAATTGCCTACGGCATTGTGCAAGAGGGAGAGCGGGAACAGGATGAGGAAACCCGACAGCGCAGTGCTCGCCTGCTGGA AGGAACGCGGGCTTTGGGGATCTACGATGCCAAGGCGGCGGTGATGGCAGGGACGGCCTACCGGGTTGCCTCGGATCCCG GCCAGGTGGGCAGGGTATTTTTGTGGGATCTGTTTAACCCTTGGGCCTGGTGGATGGAGCTGAACTCCACCCATCCCCTC ACGGGCAAACGGGTACGGGCGCTGAGCACCTATGCGGAGCAACTGGATCTGCCGGTGGAGTTCGATATGGCCAGCGTGGT TGCCCAGGGCAAGCAGCTCAACCGGCAACAGCTCTACGGGAACTTTCTGCTGGATATACTGCTGTTGAACGCCGAGTGGC TGGGGGCGATTGTGGGGGCGCTGCTCGGGATCCCAGCCTTGCAGGTGGGCTTCTATGAAATGTTTGCCGGGCTGACCCTG ATGGGGGTGGGCTTGGGCCTGCTGCTGAAGATGACGGTGATGTACCCCAGTCTGGAAAACCCGCCGGCGTTGACCGTGCT GAAGGCGATGAGCAATCCCTACGCCAGCCCCTTGCGCGGGTTGCCGATGCAGTTGGAGGGGCGGGTGATCGGGCGGGGGG ATCCGGGCTATCGCTTCGGCTCCGATCTCAAGTTCCAGGATGAGACAGGGATGATCTTCCTGCGCTATGCTTCCCGCTTT GGGCCGCTGGGCAACTTCCTGTTTGGAGCGCGCCAGGCAGGGGGGGTAATCGGCCAAGAGGGATCCGCGGTGGGGTGGTT CCGACGGGGGGTGGCCCCTTACCTGGATCTGGCCCGCTTTCAAAGCCGCCATGGCCAGCTCATCACCAGCTACCATCCCT TCTGGCAGGCTATGTGGGCTGTGCTGTTGTTAGTGGTTGCCCTGCTGGTGATGCTGTTCTAG
Upstream 100 bases:
>100_bases TAGCTCCCGTGAGGCCAATCGGCAGTCGGCAACCGAGGCAACAGTTGAATGGTTGATGAATAGTTGATCTTCTTCACCCC ACTAGATCCGGGAGAGGGCC
Downstream 100 bases:
>100_bases AGGATCGCGATCCTCAGCAGCGAAGAGCTCGCCTAGGCCATTGGGATTGGCTACTTTTGCCCACCGTTAACCCGGGCGTA GTCGTCGCTGAAGCGGACAA
Product: M48B family peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MNEQEVVQWLEQALANPHLRLQAKAQPLRDSPKAYALVIMINRPAGLALNYEELTAWFQKAIPTRYPQVKRLALYSRPMG QQAADWKTQVRLDPEPTTTRWDPGMEFSESPDLSRYCFVSNRQLLTADLPQPPGLLRQAVLGFHSLTSGQKQEVLPLLPT LFRNPSTVSTVMLSVEAALWLEPLKSLNPHELRLLSVWLSRYCFNPSRTLAELDPATSGLKTGQTKRSYRAPQVGVSLML ASFAGNLTAASGVTLSLLFGMVFVLFLTVLGSLEGGFSLGSFIFAILLTLAFNALIFFLSPWLMDWIQHSLYGTEWVSLA EIGRRSPESAEVIQRVCRQYKLKQPKLGLIRDQNPTAFTYGSLPDTARIVVSEGLFTYLEDEEVATVYAHELGHVIHWDF AVMTLASTLVQILYLLYVYMRDARDNGKRGSLRSLALVAYFFYVAGSYLLLYLSRVREYFADHFAAETTGNPNGLSRALV KIAYGIVQEGEREQDEETRQRSARLLEGTRALGIYDAKAAVMAGTAYRVASDPGQVGRVFLWDLFNPWAWWMELNSTHPL TGKRVRALSTYAEQLDLPVEFDMASVVAQGKQLNRQQLYGNFLLDILLLNAEWLGAIVGALLGIPALQVGFYEMFAGLTL MGVGLGLLLKMTVMYPSLENPPALTVLKAMSNPYASPLRGLPMQLEGRVIGRGDPGYRFGSDLKFQDETGMIFLRYASRF GPLGNFLFGARQAGGVIGQEGSAVGWFRRGVAPYLDLARFQSRHGQLITSYHPFWQAMWAVLLLVVALLVMLF
Sequences:
>Translated_793_residues MNEQEVVQWLEQALANPHLRLQAKAQPLRDSPKAYALVIMINRPAGLALNYEELTAWFQKAIPTRYPQVKRLALYSRPMG QQAADWKTQVRLDPEPTTTRWDPGMEFSESPDLSRYCFVSNRQLLTADLPQPPGLLRQAVLGFHSLTSGQKQEVLPLLPT LFRNPSTVSTVMLSVEAALWLEPLKSLNPHELRLLSVWLSRYCFNPSRTLAELDPATSGLKTGQTKRSYRAPQVGVSLML ASFAGNLTAASGVTLSLLFGMVFVLFLTVLGSLEGGFSLGSFIFAILLTLAFNALIFFLSPWLMDWIQHSLYGTEWVSLA EIGRRSPESAEVIQRVCRQYKLKQPKLGLIRDQNPTAFTYGSLPDTARIVVSEGLFTYLEDEEVATVYAHELGHVIHWDF AVMTLASTLVQILYLLYVYMRDARDNGKRGSLRSLALVAYFFYVAGSYLLLYLSRVREYFADHFAAETTGNPNGLSRALV KIAYGIVQEGEREQDEETRQRSARLLEGTRALGIYDAKAAVMAGTAYRVASDPGQVGRVFLWDLFNPWAWWMELNSTHPL TGKRVRALSTYAEQLDLPVEFDMASVVAQGKQLNRQQLYGNFLLDILLLNAEWLGAIVGALLGIPALQVGFYEMFAGLTL MGVGLGLLLKMTVMYPSLENPPALTVLKAMSNPYASPLRGLPMQLEGRVIGRGDPGYRFGSDLKFQDETGMIFLRYASRF GPLGNFLFGARQAGGVIGQEGSAVGWFRRGVAPYLDLARFQSRHGQLITSYHPFWQAMWAVLLLVVALLVMLF >Mature_793_residues MNEQEVVQWLEQALANPHLRLQAKAQPLRDSPKAYALVIMINRPAGLALNYEELTAWFQKAIPTRYPQVKRLALYSRPMG QQAADWKTQVRLDPEPTTTRWDPGMEFSESPDLSRYCFVSNRQLLTADLPQPPGLLRQAVLGFHSLTSGQKQEVLPLLPT LFRNPSTVSTVMLSVEAALWLEPLKSLNPHELRLLSVWLSRYCFNPSRTLAELDPATSGLKTGQTKRSYRAPQVGVSLML ASFAGNLTAASGVTLSLLFGMVFVLFLTVLGSLEGGFSLGSFIFAILLTLAFNALIFFLSPWLMDWIQHSLYGTEWVSLA EIGRRSPESAEVIQRVCRQYKLKQPKLGLIRDQNPTAFTYGSLPDTARIVVSEGLFTYLEDEEVATVYAHELGHVIHWDF AVMTLASTLVQILYLLYVYMRDARDNGKRGSLRSLALVAYFFYVAGSYLLLYLSRVREYFADHFAAETTGNPNGLSRALV KIAYGIVQEGEREQDEETRQRSARLLEGTRALGIYDAKAAVMAGTAYRVASDPGQVGRVFLWDLFNPWAWWMELNSTHPL TGKRVRALSTYAEQLDLPVEFDMASVVAQGKQLNRQQLYGNFLLDILLLNAEWLGAIVGALLGIPALQVGFYEMFAGLTL MGVGLGLLLKMTVMYPSLENPPALTVLKAMSNPYASPLRGLPMQLEGRVIGRGDPGYRFGSDLKFQDETGMIFLRYASRF GPLGNFLFGARQAGGVIGQEGSAVGWFRRGVAPYLDLARFQSRHGQLITSYHPFWQAMWAVLLLVVALLVMLF
Specific function: Unknown Function. Overexpression Of A Truncated Form Of The Htpx Protein Leads To An Increase In The Degradation Of Abnormal Proteins. [C]
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M48B family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022919 - InterPro: IPR001915 [H]
Pfam domain/function: PF01435 Peptidase_M48 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 88590; Mature: 88590
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEQEVVQWLEQALANPHLRLQAKAQPLRDSPKAYALVIMINRPAGLALNYEELTAWFQK CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCEECHHHHHHHHHH AIPTRYPQVKRLALYSRPMGQQAADWKTQVRLDPEPTTTRWDPGMEFSESPDLSRYCFVS HCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEC NRQLLTADLPQPPGLLRQAVLGFHSLTSGQKQEVLPLLPTLFRNPSTVSTVMLSVEAALW CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LEPLKSLNPHELRLLSVWLSRYCFNPSRTLAELDPATSGLKTGQTKRSYRAPQVGVSLML HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH ASFAGNLTAASGVTLSLLFGMVFVLFLTVLGSLEGGFSLGSFIFAILLTLAFNALIFFLS HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH PWLMDWIQHSLYGTEWVSLAEIGRRSPESAEVIQRVCRQYKLKQPKLGLIRDQNPTAFTY HHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEE GSLPDTARIVVSEGLFTYLEDEEVATVYAHELGHVIHWDFAVMTLASTLVQILYLLYVYM CCCCCHHHHHHHCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH RDARDNGKRGSLRSLALVAYFFYVAGSYLLLYLSRVREYFADHFAAETTGNPNGLSRALV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH KIAYGIVQEGEREQDEETRQRSARLLEGTRALGIYDAKAAVMAGTAYRVASDPGQVGRVF HHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHEEEECCHHHHHCCCEEEECCCCCCCCHHH LWDLFNPWAWWMELNSTHPLTGKRVRALSTYAEQLDLPVEFDMASVVAQGKQLNRQQLYG HHHHCCHHEEHEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH NFLLDILLLNAEWLGAIVGALLGIPALQVGFYEMFAGLTLMGVGLGLLLKMTVMYPSLEN HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PPALTVLKAMSNPYASPLRGLPMQLEGRVIGRGDPGYRFGSDLKFQDETGMIFLRYASRF CCHHHHHHHHCCCCCCHHCCCCCEECCEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHC GPLGNFLFGARQAGGVIGQEGSAVGWFRRGVAPYLDLARFQSRHGQLITSYHPFWQAMWA CCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCEEECCCHHHHHHHH VLLLVVALLVMLF HHHHHHHHHHHHC >Mature Secondary Structure MNEQEVVQWLEQALANPHLRLQAKAQPLRDSPKAYALVIMINRPAGLALNYEELTAWFQK CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCEECHHHHHHHHHH AIPTRYPQVKRLALYSRPMGQQAADWKTQVRLDPEPTTTRWDPGMEFSESPDLSRYCFVS HCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEC NRQLLTADLPQPPGLLRQAVLGFHSLTSGQKQEVLPLLPTLFRNPSTVSTVMLSVEAALW CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH LEPLKSLNPHELRLLSVWLSRYCFNPSRTLAELDPATSGLKTGQTKRSYRAPQVGVSLML HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHH ASFAGNLTAASGVTLSLLFGMVFVLFLTVLGSLEGGFSLGSFIFAILLTLAFNALIFFLS HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH PWLMDWIQHSLYGTEWVSLAEIGRRSPESAEVIQRVCRQYKLKQPKLGLIRDQNPTAFTY HHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEE GSLPDTARIVVSEGLFTYLEDEEVATVYAHELGHVIHWDFAVMTLASTLVQILYLLYVYM CCCCCHHHHHHHCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH RDARDNGKRGSLRSLALVAYFFYVAGSYLLLYLSRVREYFADHFAAETTGNPNGLSRALV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH KIAYGIVQEGEREQDEETRQRSARLLEGTRALGIYDAKAAVMAGTAYRVASDPGQVGRVF HHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHEEEECCHHHHHCCCEEEECCCCCCCCHHH LWDLFNPWAWWMELNSTHPLTGKRVRALSTYAEQLDLPVEFDMASVVAQGKQLNRQQLYG HHHHCCHHEEHEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH NFLLDILLLNAEWLGAIVGALLGIPALQVGFYEMFAGLTLMGVGLGLLLKMTVMYPSLEN HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PPALTVLKAMSNPYASPLRGLPMQLEGRVIGRGDPGYRFGSDLKFQDETGMIFLRYASRF CCHHHHHHHHCCCCCCHHCCCCCEECCEEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHC GPLGNFLFGARQAGGVIGQEGSAVGWFRRGVAPYLDLARFQSRHGQLITSYHPFWQAMWA CCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCEEECCCHHHHHHHH VLLLVVALLVMLF HHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]