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The map label for this gene is psbC [H]

Identifier: 86609708

GI number: 86609708

Start: 2371217

End: 2372797

Strand: Reverse

Name: psbC [H]

Synonym: CYB_2266

Alternate gene names: 86609708

Gene position: 2372797-2371217 (Counterclockwise)

Preceding gene: 86609709

Following gene: 86609707

Centisome position: 77.88

GC content: 61.99

Gene sequence:

>1581_bases
ATGACCGGCGCAGTTCTATCTTCATCGCCTACTTCTGCTGAGGGATCCCCTCAGGTCAGTTGGTTGGCAGGGAATGCTCG
TTTGCTCAACCTATCCGGAAAGCTGCTGGGGGCCCACGTGGCCCATGCGGGGCTGATCATGCTGTGGGCCGGCGGCATGA
CCTTGTTCGAGGTGGCCCACTGGGATCCAAATCAACCTATGTACAGCCAGGGGCTGATTTTGTTGCCCCATCTGGCCAGC
TTGGGCATCGGCGTCAACGCAGAAGGGGTGGTTACGGATCCCTATCCCTTTTTTGTCGTGGGCGTTCTGCACCTAATTGC
CTCGGCAGTGCTGGGGGCAGGAGGGATCTTCCATGCCCTTTTGGGACCAGAGGTGCTGAGCAAGGGGAAAACCTTTGCCG
AGTTTTTCGGCTACGACTGGGAAGATGACGACAAGATGACCACCATCCTCGGCATCCACCTGCTGCTGCTGGGGCTGGGT
GCATGGCTGCTGGTGGCCAAGGCTCTCTTTTGGGGAGGGCTGTACGATGCCAACCTGGGCCGCGTGCGGATCGTTGCGGA
TCCCACCCTCAATCCGCTGCGGATCTTTGCCTACCTGACGCCGCTCATGGGTCAGCAGGGCATGGCCGCCGTGAACAATC
TGGAAGATCTGGTGGGAGGGCACATCTATGTCGGCCTGCTCTGTGTGCTGGGGGGATGGTGGCACATAGCCACACGGCCC
TTTGCCTGGGCCAAGCAGGTGCTGATCTACTCGGGCGAAGCCTACCTCTCCTACAGCCTGGGGGCCCTGGCCTACATGGG
CATCTTGGCGGCCTATTTTGTCAGCGTCAACGAGATCGCCTATCCGGTGGCTTTCTACGGGCCGCTGGGGCTGGCTGCCG
ACGAGATGGGTGTGGTGAGCAGCCGTACCTGGTTGGCTACAGCCCACTTTGTCTTGGGGATCCTGTTTTTGGCGGGGCAC
ATCTGGCATGCCATCCGGGCGCGGGCGGCGGCCAGCGGCTTTGACTTCCAGCACGGGGGCTGGGTGCGAGCCACAGATCC
GCAGGTGGGCAACTTGGACACGCCGGTAAACCGGGGCGATCTCACCCTGCTGCTGCTGCAAAACCTGCCCATCTACCGGG
AGGGCCTCTCTCCTTTTTTGCGCGGCTTGGAGATCGGCATGGCTCATGGGTACTTCCTGGTGGGGCCGTTTTACAAGTTG
AGTCCGCTGCGGAATTCGGAGCAGGCCCTGACGGCAGGGACGCTGGCGACCATCGGCCTGGTGCTGATCCTGACGGTTTG
TCTCTCCATTTACGGACGGGTGTCCTTTCCTCGCTCGCGGCTGGTGGCAGTGGTCAATACCCCCTACGGCGAGGTGGCCT
ATCCGACGCCGGGCGTGCAACTGATGGCCGAATCGCAGGGATCCCCTCAGCCGGTGCGAGTACCGGCAGGATCGGAGGAC
TTGCCCGAAAACTTGCGCACCCGTGCCGGCTGGAGCCAGTTGGCGGGAGGGTTTCTGGTGGGCGGCGTTGGCGGTGCCCT
GTTTGCCTACATGCTCCTGAACAGTGCGGACGTGTTGGCCCAGATTTTGCCTGGGCTGTGA

Upstream 100 bases:

>100_bases
AAAAACGAATTAAAGAGTGGACGGCTAAACTAAAAACGCTCTTCAATCTGTAATTCAAACCCGGCTTCTTAACTTGTCAT
TGATACTGTGGGAGTTTGTC

Downstream 100 bases:

>100_bases
ATGAGGTTTGAGGCTCCCTGGTTCGGGGATCTGCAGAAAGGAGAGGGGTATTGTCCCCTCTCCTCTATCCAGATCGGCTC
GGATCCTTTGGGCCGCATTT

Product: PsbB/PsbC family photosystem II protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MTGAVLSSSPTSAEGSPQVSWLAGNARLLNLSGKLLGAHVAHAGLIMLWAGGMTLFEVAHWDPNQPMYSQGLILLPHLAS
LGIGVNAEGVVTDPYPFFVVGVLHLIASAVLGAGGIFHALLGPEVLSKGKTFAEFFGYDWEDDDKMTTILGIHLLLLGLG
AWLLVAKALFWGGLYDANLGRVRIVADPTLNPLRIFAYLTPLMGQQGMAAVNNLEDLVGGHIYVGLLCVLGGWWHIATRP
FAWAKQVLIYSGEAYLSYSLGALAYMGILAAYFVSVNEIAYPVAFYGPLGLAADEMGVVSSRTWLATAHFVLGILFLAGH
IWHAIRARAAASGFDFQHGGWVRATDPQVGNLDTPVNRGDLTLLLLQNLPIYREGLSPFLRGLEIGMAHGYFLVGPFYKL
SPLRNSEQALTAGTLATIGLVLILTVCLSIYGRVSFPRSRLVAVVNTPYGEVAYPTPGVQLMAESQGSPQPVRVPAGSED
LPENLRTRAGWSQLAGGFLVGGVGGALFAYMLLNSADVLAQILPGL

Sequences:

>Translated_526_residues
MTGAVLSSSPTSAEGSPQVSWLAGNARLLNLSGKLLGAHVAHAGLIMLWAGGMTLFEVAHWDPNQPMYSQGLILLPHLAS
LGIGVNAEGVVTDPYPFFVVGVLHLIASAVLGAGGIFHALLGPEVLSKGKTFAEFFGYDWEDDDKMTTILGIHLLLLGLG
AWLLVAKALFWGGLYDANLGRVRIVADPTLNPLRIFAYLTPLMGQQGMAAVNNLEDLVGGHIYVGLLCVLGGWWHIATRP
FAWAKQVLIYSGEAYLSYSLGALAYMGILAAYFVSVNEIAYPVAFYGPLGLAADEMGVVSSRTWLATAHFVLGILFLAGH
IWHAIRARAAASGFDFQHGGWVRATDPQVGNLDTPVNRGDLTLLLLQNLPIYREGLSPFLRGLEIGMAHGYFLVGPFYKL
SPLRNSEQALTAGTLATIGLVLILTVCLSIYGRVSFPRSRLVAVVNTPYGEVAYPTPGVQLMAESQGSPQPVRVPAGSED
LPENLRTRAGWSQLAGGFLVGGVGGALFAYMLLNSADVLAQILPGL
>Mature_525_residues
TGAVLSSSPTSAEGSPQVSWLAGNARLLNLSGKLLGAHVAHAGLIMLWAGGMTLFEVAHWDPNQPMYSQGLILLPHLASL
GIGVNAEGVVTDPYPFFVVGVLHLIASAVLGAGGIFHALLGPEVLSKGKTFAEFFGYDWEDDDKMTTILGIHLLLLGLGA
WLLVAKALFWGGLYDANLGRVRIVADPTLNPLRIFAYLTPLMGQQGMAAVNNLEDLVGGHIYVGLLCVLGGWWHIATRPF
AWAKQVLIYSGEAYLSYSLGALAYMGILAAYFVSVNEIAYPVAFYGPLGLAADEMGVVSSRTWLATAHFVLGILFLAGHI
WHAIRARAAASGFDFQHGGWVRATDPQVGNLDTPVNRGDLTLLLLQNLPIYREGLSPFLRGLEIGMAHGYFLVGPFYKLS
PLRNSEQALTAGTLATIGLVLILTVCLSIYGRVSFPRSRLVAVVNTPYGEVAYPTPGVQLMAESQGSPQPVRVPAGSEDL
PENLRTRAGWSQLAGGFLVGGVGGALFAYMLLNSADVLAQILPGL

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 56016; Mature: 55885

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAVLSSSPTSAEGSPQVSWLAGNARLLNLSGKLLGAHVAHAGLIMLWAGGMTLFEVAH
CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCHHHHHHHHHHCEEEEEECCCEEEEEEC
WDPNQPMYSQGLILLPHLASLGIGVNAEGVVTDPYPFFVVGVLHLIASAVLGAGGIFHAL
CCCCCCHHHCCCEEEECHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHH
LGPEVLSKGKTFAEFFGYDWEDDDKMTTILGIHLLLLGLGAWLLVAKALFWGGLYDANLG
HCHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC
RVRIVADPTLNPLRIFAYLTPLMGQQGMAAVNNLEDLVGGHIYVGLLCVLGGWWHIATRP
EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCC
FAWAKQVLIYSGEAYLSYSLGALAYMGILAAYFVSVNEIAYPVAFYGPLGLAADEMGVVS
HHHHHHHHEECCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHCCCCC
SRTWLATAHFVLGILFLAGHIWHAIRARAAASGFDFQHGGWVRATDPQVGNLDTPVNRGD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCC
LTLLLLQNLPIYREGLSPFLRGLEIGMAHGYFLVGPFYKLSPLRNSEQALTAGTLATIGL
EEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCHHHHHHHHHHHHH
VLILTVCLSIYGRVSFPRSRLVAVVNTPYGEVAYPTPGVQLMAESQGSPQPVRVPAGSED
HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCC
LPENLRTRAGWSQLAGGFLVGGVGGALFAYMLLNSADVLAQILPGL
CHHHHHHHCCHHHHCCCEEEECHHHHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
TGAVLSSSPTSAEGSPQVSWLAGNARLLNLSGKLLGAHVAHAGLIMLWAGGMTLFEVAH
CCCCCCCCCCCCCCCCCEEEEECCEEEEEECCHHHHHHHHHHCEEEEEECCCEEEEEEC
WDPNQPMYSQGLILLPHLASLGIGVNAEGVVTDPYPFFVVGVLHLIASAVLGAGGIFHAL
CCCCCCHHHCCCEEEECHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHH
LGPEVLSKGKTFAEFFGYDWEDDDKMTTILGIHLLLLGLGAWLLVAKALFWGGLYDANLG
HCHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC
RVRIVADPTLNPLRIFAYLTPLMGQQGMAAVNNLEDLVGGHIYVGLLCVLGGWWHIATRP
EEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCC
FAWAKQVLIYSGEAYLSYSLGALAYMGILAAYFVSVNEIAYPVAFYGPLGLAADEMGVVS
HHHHHHHHEECCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHCCCCC
SRTWLATAHFVLGILFLAGHIWHAIRARAAASGFDFQHGGWVRATDPQVGNLDTPVNRGD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCC
LTLLLLQNLPIYREGLSPFLRGLEIGMAHGYFLVGPFYKLSPLRNSEQALTAGTLATIGL
EEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCCCCCCHHHHHHHHHHHHH
VLILTVCLSIYGRVSFPRSRLVAVVNTPYGEVAYPTPGVQLMAESQGSPQPVRVPAGSED
HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEECCCCCCC
LPENLRTRAGWSQLAGGFLVGGVGGALFAYMLLNSADVLAQILPGL
CHHHHHHHCCHHHHCCCEEEECHHHHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]