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The map label for this gene is 86609600

Identifier: 86609600

GI number: 86609600

Start: 2254438

End: 2255439

Strand: Reverse

Name: 86609600

Synonym: CYB_2153

Alternate gene names: NA

Gene position: 2255439-2254438 (Counterclockwise)

Preceding gene: 86609601

Following gene: 86609599

Centisome position: 74.03

GC content: 61.78

Gene sequence:

>1002_bases
GTGAGGGTCAAGATGTTCAAACCCCTGAGGCTGGTGCTGCTGATTGCTGTCTCGGTGCTGCTAATGGCGGCGCGGATGCC
CAACATGCGGGTGGTCCCCTGGCAGCAGGTGGAAGTGCCCACCCAGAACATTCTGCTGGACATTGCCTTCACCGGCACCA
CCCCTTCCCATGGCTGGTTGGTGGGAGACAAGGCGACGCTGCTGGAATCCCGCGATGGGGGTCTGCACTGGCAGGTGCGG
GAGCTGCCGGGTCTGGAGCCGGAAGCCTACCTGGCCTCCATTAGCTTTGCTGGGGCAGAAGGCTGGGTGGCCGGGCAGCC
GAAGATCCTCCTCCACACCCTAAACGAGGGATCCGACTGGACTTCCATCCGCCTCAACAACCAACTGCCAGGGGAGCCGC
TCTTGATCCAGGCTCTGGGCCCTGGCGCCGCCGAAATGGTGACCAATGTGGGGGCCATCTACCGCACCGAAGATGGCGGT
CAGACCTGGCATGCCCAAGTGGATGAGCCGATTGGGGCCATCAAAAACATTGCCCGCGGCCCTGAAGGCGAATATCTGGC
GGTGTCGTCGCGGGGCAGCTTCTACTTTCTGTACACTCCTGAAAGTCGCACCTGGAAGCCCTACCCGCGGGAAAGCTCCC
GCCGCATTCAAAACATGGGCTTTGGCCCCCACGGCAGCGCTTGGAAATTGAACCAAGGGGCGGAGATCGCCTTTACCGAT
GACTTCACCTCCGGCCAGTGGTCGTCGCCGCTGCGTCCGGGGCGGGCCCTCAGCTTTGGCTACCTCAATGCCGCCTACCA
GAACGACCACGACCTGTGGGTGGTGGGGGGTGGCGCTACCCTGATCCACAGCCCTGATGGTGGCAAAACCTGGGAACAGG
CCAAGAAACTCAGCAACATCCCCGCCAACTTCTACAGCATTGAGTTTTTCGGCCCCGAGCAAGGGTTTATTCTGGGGCAA
CGGGGCACCCTCTTGCGCTATGTCAGCTCCAACAACTCCTGA

Upstream 100 bases:

>100_bases
GCCTGGGGGTGAACGTGATGACCCCTGCTCAAAAGAACCTGCTGATCTTCTTGGGACTGGCGCTGGGATTTTTATTTTTG
ATGAGTTTCTATTTCGTCGA

Downstream 100 bases:

>100_bases
AGGTCTCAGGGATCCCTAACCGGCACACGGGTGGACACACGCGCCAAGGATCCAGCTTCACGCCCTCGGCTGCTGGTTGC
TGCCAGCGGCACTGGTGGCC

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRVKMFKPLRLVLLIAVSVLLMAARMPNMRVVPWQQVEVPTQNILLDIAFTGTTPSHGWLVGDKATLLESRDGGLHWQVR
ELPGLEPEAYLASISFAGAEGWVAGQPKILLHTLNEGSDWTSIRLNNQLPGEPLLIQALGPGAAEMVTNVGAIYRTEDGG
QTWHAQVDEPIGAIKNIARGPEGEYLAVSSRGSFYFLYTPESRTWKPYPRESSRRIQNMGFGPHGSAWKLNQGAEIAFTD
DFTSGQWSSPLRPGRALSFGYLNAAYQNDHDLWVVGGGATLIHSPDGGKTWEQAKKLSNIPANFYSIEFFGPEQGFILGQ
RGTLLRYVSSNNS

Sequences:

>Translated_333_residues
MRVKMFKPLRLVLLIAVSVLLMAARMPNMRVVPWQQVEVPTQNILLDIAFTGTTPSHGWLVGDKATLLESRDGGLHWQVR
ELPGLEPEAYLASISFAGAEGWVAGQPKILLHTLNEGSDWTSIRLNNQLPGEPLLIQALGPGAAEMVTNVGAIYRTEDGG
QTWHAQVDEPIGAIKNIARGPEGEYLAVSSRGSFYFLYTPESRTWKPYPRESSRRIQNMGFGPHGSAWKLNQGAEIAFTD
DFTSGQWSSPLRPGRALSFGYLNAAYQNDHDLWVVGGGATLIHSPDGGKTWEQAKKLSNIPANFYSIEFFGPEQGFILGQ
RGTLLRYVSSNNS
>Mature_333_residues
MRVKMFKPLRLVLLIAVSVLLMAARMPNMRVVPWQQVEVPTQNILLDIAFTGTTPSHGWLVGDKATLLESRDGGLHWQVR
ELPGLEPEAYLASISFAGAEGWVAGQPKILLHTLNEGSDWTSIRLNNQLPGEPLLIQALGPGAAEMVTNVGAIYRTEDGG
QTWHAQVDEPIGAIKNIARGPEGEYLAVSSRGSFYFLYTPESRTWKPYPRESSRRIQNMGFGPHGSAWKLNQGAEIAFTD
DFTSGQWSSPLRPGRALSFGYLNAAYQNDHDLWVVGGGATLIHSPDGGKTWEQAKKLSNIPANFYSIEFFGPEQGFILGQ
RGTLLRYVSSNNS

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YC48L_SYNJB (Q2JJR3)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478362.1
- ProteinModelPortal:   Q2JJR3
- STRING:   Q2JJR3
- GeneID:   3902586
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_2153
- TIGR:   CYB_2153
- eggNOG:   COG4447
- HOGENOM:   HBG285032
- ProtClustDB:   PRK13684
- BioCyc:   SSP321332:CYB_2153-MONOMER
- HAMAP:   MF_01348
- InterPro:   IPR016705
- PIRSF:   PIRSF017875

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36651; Mature: 36651

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKMFKPLRLVLLIAVSVLLMAARMPNMRVVPWQQVEVPTQNILLDIAFTGTTPSHGWL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCEECCCCCCEEEEEEEECCCCCCCEE
VGDKATLLESRDGGLHWQVRELPGLEPEAYLASISFAGAEGWVAGQPKILLHTLNEGSDW
ECCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEECCCCEEEEEEECCCCCE
TSIRLNNQLPGEPLLIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVDEPIGAIKNIARG
EEEEECCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHHHHCC
PEGEYLAVSSRGSFYFLYTPESRTWKPYPRESSRRIQNMGFGPHGSAWKLNQGAEIAFTD
CCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEEC
DFTSGQWSSPLRPGRALSFGYLNAAYQNDHDLWVVGGGATLIHSPDGGKTWEQAKKLSNI
CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHHHCC
PANFYSIEFFGPEQGFILGQRGTLLRYVSSNNS
CCCEEEEEEECCCCCEEECCCCCEEEEEECCCC
>Mature Secondary Structure
MRVKMFKPLRLVLLIAVSVLLMAARMPNMRVVPWQQVEVPTQNILLDIAFTGTTPSHGWL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCEECCCCCCEEEEEEEECCCCCCCEE
VGDKATLLESRDGGLHWQVRELPGLEPEAYLASISFAGAEGWVAGQPKILLHTLNEGSDW
ECCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEECCCCEEEEEEECCCCCE
TSIRLNNQLPGEPLLIQALGPGAAEMVTNVGAIYRTEDGGQTWHAQVDEPIGAIKNIARG
EEEEECCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCEEEEECCCHHHHHHHHHCC
PEGEYLAVSSRGSFYFLYTPESRTWKPYPRESSRRIQNMGFGPHGSAWKLNQGAEIAFTD
CCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEEC
DFTSGQWSSPLRPGRALSFGYLNAAYQNDHDLWVVGGGATLIHSPDGGKTWEQAKKLSNI
CCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCEEEEECCCCCCHHHHHHHHHCC
PANFYSIEFFGPEQGFILGQRGTLLRYVSSNNS
CCCEEEEEEECCCCCEEECCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA