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The map label for this gene is nusB

Identifier: 86609546

GI number: 86609546

Start: 2193347

End: 2194222

Strand: Reverse

Name: nusB

Synonym: CYB_2099

Alternate gene names: 86609546

Gene position: 2194222-2193347 (Counterclockwise)

Preceding gene: 86609547

Following gene: 86609544

Centisome position: 72.02

GC content: 59.25

Gene sequence:

>876_bases
ATGCAACCTCGGCGTATTGCCCGCGAACTGGCCCTGCTGGGGGTCAATCAACTGCCAGCCACGGCGGCCAAACTGAGCGA
AAAACAACTGGAGGACTTGCTGCTGGCAGCCATCCGCGCCCTGAGTGAAGAGACCCATGAAACCCTCTCCACAGCGGCGG
CGGAAATCCAGCGCAGCGACCGTTTGTTGCACGAGAGCGATCCTCTATTGTTGGCCGATTCGGATCCCAAGGAAGAGGGT
GGATCCCGCTCCGTCACCCTCCGCCTTCATCAAGCCCAACGGCACCTGCAGCGCCTGGAAATTACTCTAAAGGAGGCGAA
GGTTCCTAACCCCAATGCCCTACGGGGGGAAGTGCTGGAGCTAATCCAGCAGGTGCAAGTGGCTCTCAGCAACGCCGGCC
AAGCCCTAGAACACCTGGAACAGCGGCTGCACAGCGTCCGCCACATCTTGGATGAGGTTGTCCAGTTGTCCCAAAGAGCA
GTCAACCGGGTGGGCGTTGCCCTGTCCATGCCGGAACTGTTGTACATTGCCCAATCCCAAGAAGTGCGTGCCTACGCTTT
GCAACTGTTAACTGCCCTGCGAACCCACAAGGAGGCGATTGATGCTCGTTTGCAAAAGGCTTTGGTGGGTTGGCAATTGC
AGCGGGTTGGTCGGATCGAGCGAGATATCCTGCGCCTGGCGGTGGTGGAGATGGAAATACTGGCCAGCAGCCCCGTGAAG
GTTGCCATCAACGAAGCTGTAGAATTGGCCAAAAAATACGGGGATCCTGAAGCCGCCGCTTTCGTCAACGGAGTGCTGCG
ACGGGTAGTGGACAGCCAGATGGAGACCCACCGGGGTCGGGATCCCTCCCTCCCTGGTTCTGGTTCCGGGGGCTGA

Upstream 100 bases:

>100_bases
TTCATGGATTGGCAACCTGCTAGCATGGCTAAGCCCGATAGCGCTTGCGCGCCGCCTTGCGGCAATGGGGCAGTCTTTCA
GAAGCTATGGATATTCTGCA

Downstream 100 bases:

>100_bases
GCAGATCACTGGGGATCTTCCTTGCCAGGATAAAAGTCGGGATCCATCACCTGCTCAAATGTGTAGGGACACTGGGCAGG
CAGATCTGCTTCAGACAATG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MQPRRIARELALLGVNQLPATAAKLSEKQLEDLLLAAIRALSEETHETLSTAAAEIQRSDRLLHESDPLLLADSDPKEEG
GSRSVTLRLHQAQRHLQRLEITLKEAKVPNPNALRGEVLELIQQVQVALSNAGQALEHLEQRLHSVRHILDEVVQLSQRA
VNRVGVALSMPELLYIAQSQEVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVK
VAINEAVELAKKYGDPEAAAFVNGVLRRVVDSQMETHRGRDPSLPGSGSGG

Sequences:

>Translated_291_residues
MQPRRIARELALLGVNQLPATAAKLSEKQLEDLLLAAIRALSEETHETLSTAAAEIQRSDRLLHESDPLLLADSDPKEEG
GSRSVTLRLHQAQRHLQRLEITLKEAKVPNPNALRGEVLELIQQVQVALSNAGQALEHLEQRLHSVRHILDEVVQLSQRA
VNRVGVALSMPELLYIAQSQEVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVK
VAINEAVELAKKYGDPEAAAFVNGVLRRVVDSQMETHRGRDPSLPGSGSGG
>Mature_291_residues
MQPRRIARELALLGVNQLPATAAKLSEKQLEDLLLAAIRALSEETHETLSTAAAEIQRSDRLLHESDPLLLADSDPKEEG
GSRSVTLRLHQAQRHLQRLEITLKEAKVPNPNALRGEVLELIQQVQVALSNAGQALEHLEQRLHSVRHILDEVVQLSQRA
VNRVGVALSMPELLYIAQSQEVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVK
VAINEAVELAKKYGDPEAAAFVNGVLRRVVDSQMETHRGRDPSLPGSGSGG

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=84, Percent_Identity=39.2857142857143, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_SYNJB (Q2JHC7)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478308.1
- ProteinModelPortal:   Q2JHC7
- SMR:   Q2JHC7
- STRING:   Q2JHC7
- GeneID:   3902686
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_2099
- TIGR:   CYB_2099
- eggNOG:   COG0781
- HOGENOM:   HBG635304
- OMA:   GHRFING
- PhylomeDB:   Q2JHC7
- ProtClustDB:   PRK09634
- BioCyc:   SSP321332:CYB_2099-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 32103; Mature: 32103

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPRRIARELALLGVNQLPATAAKLSEKQLEDLLLAAIRALSEETHETLSTAAAEIQRSD
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLHESDPLLLADSDPKEEGGSRSVTLRLHQAQRHLQRLEITLKEAKVPNPNALRGEVLE
HHHHCCCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LIQQVQVALSNAGQALEHLEQRLHSVRHILDEVVQLSQRAVNRVGVALSMPELLYIAQSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCH
EVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VAINEAVELAKKYGDPEAAAFVNGVLRRVVDSQMETHRGRDPSLPGSGSGG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MQPRRIARELALLGVNQLPATAAKLSEKQLEDLLLAAIRALSEETHETLSTAAAEIQRSD
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLLHESDPLLLADSDPKEEGGSRSVTLRLHQAQRHLQRLEITLKEAKVPNPNALRGEVLE
HHHHCCCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LIQQVQVALSNAGQALEHLEQRLHSVRHILDEVVQLSQRAVNRVGVALSMPELLYIAQSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCH
EVRAYALQLLTALRTHKEAIDARLQKALVGWQLQRVGRIERDILRLAVVEMEILASSPVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
VAINEAVELAKKYGDPEAAAFVNGVLRRVVDSQMETHRGRDPSLPGSGSGG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA