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The map label for this gene is ydcM [C]

Identifier: 86609519

GI number: 86609519

Start: 2168361

End: 2169515

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_2071

Alternate gene names: 86609519

Gene position: 2169515-2168361 (Counterclockwise)

Preceding gene: 86609525

Following gene: 86609508

Centisome position: 71.21

GC content: 56.02

Gene sequence:

>1155_bases
ATGAGCCAAGTCCTGACCATATCCTGCAAGCTCAAGGCGTCCCAGTCGCAAGCCGCCAAATTGGACGCGACGATGGATGT
CTTTGTGCAGGCGTTGAACTGGGTCAACCAGAACACGCCGGAGAAGATCGTCAACGCGGTCAAACTGCAATCCCTTTGCT
ACTACGAGATTCGAGCCCGATTCGGCTTGTCCAGTAACTTGGCCCAGCAGGTCTGCAGACGGGTGGCCGGCGCCCGCAAA
GTGGCGAGACAGCGCAACCGTCCAGTTAAAGAGTTCAAGCGTGGGTTCGTTACCTACGACGCACGTATCTTTTCATTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAAGGGAGAGAACGCTTTGAGCTAGCCATTGGTAACTACCAGAGGG
GAATGCTGGCTGGCTCTAACCCCAAATCGGCCACCCTAGTCCAGCGGAAGGATGGCTCCTACTACATCCAGATTTGCGTA
GAGGAAAAGCCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGACTTGGGAAGGACGGATATTGCTCATACCTC
AGAAGGGGACAACTGGAATGGACAGCAGTTGAGCAGAGTCCGAGAGCGCTACTCCCGGTTGAGGGCGGTACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCAGAGAACTGTTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGACCACAAACAGCGCTATTGCTCTGGAAGA
CCTGACAGGGATCCGGGGAAGGGTCAATCAACAGCCACGCAGCAAAGCTGAGCGGCGTAGGACCAACAGTTGGGCGTTCT
ACCAACTACGCCAGTTTCTGGAATACAAGGCGAGGGTTGCAGGGGTTTCTCTGATTCTTGTGCCGCCTGCCTACACGTCG
CAGACCTGCCACTGGTGTTTGCACATCCATCCCGACCCTGCGCAATCCTACCGCAGTGGCAAGTCGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTCTTGGGGGCTGTCGTAAACCAGCCTAGAG
GTTCGTGGTTGGCTTGCCAACTGCAGGGCTACTGA

Upstream 100 bases:

>100_bases
CAAACTCTCCTTGAGTTCAGCTTACTAGCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAATGCGCTT
TGATGAAGTACAATGAACTT

Downstream 100 bases:

>100_bases
AAGCCCCCCCTGTACTGCGAAGCAGTCAGGGTCGGGTAGTTTACTTTAAGTTTGTGGAGTTTCTTCCGATGGCTCTGGCT
GCTGGTGGCGGGCCTGGGCC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MSQVLTISCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRGFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EEKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRGRVNQQPRSKAERRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTS
QTCHWCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSWLACQLQGY

Sequences:

>Translated_384_residues
MSQVLTISCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARK
VARQRNRPVKEFKRGFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICV
EEKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRGRVNQQPRSKAERRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTS
QTCHWCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSWLACQLQGY
>Mature_383_residues
SQVLTISCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRARFGLSSNLAQQVCRRVAGARKV
ARQRNRPVKEFKRGFVTYDARIFSFREKDWTVSLTTVEGRERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVE
EKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRFQ
AWVNHRISKAIVSRAKTTNSAIALEDLTGIRGRVNQQPRSKAERRRTNSWAFYQLRQFLEYKARVAGVSLILVPPAYTSQ
TCHWCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGANVIALLGAVVNQPRGSWLACQLQGY

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=234, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43612; Mature: 43481

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTISCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRGFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEHEEEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEEKPPKQQDTDKVIGVDLGR
CCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRGRVNQQPRSKAERRRTNSWAFYQLRQFL
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLILVPPAYTSQTCHWCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSWLACQLQGY
HHHHHHHHHCCCCCCEEEEEECCC
>Mature Secondary Structure 
SQVLTISCKLKASQSQAAKLDATMDVFVQALNWVNQNTPEKIVNAVKLQSLCYYEIRAR
CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRVAGARKVARQRNRPVKEFKRGFVTYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEHEEEEEECCCEEEEEEEECC
RERFELAIGNYQRGMLAGSNPKSATLVQRKDGSYYIQICVEEKPPKQQDTDKVIGVDLGR
CCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLSRVRERYSRLRAVLQRKASKGTRSSRRRCRELLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKTTNSAIALEDLTGIRGRVNQQPRSKAERRRTNSWAFYQLRQFL
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
EYKARVAGVSLILVPPAYTSQTCHWCLHIHPDPAQSYRSGKSFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCHH
VIALLGAVVNQPRGSWLACQLQGY
HHHHHHHHHCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]