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The map label for this gene is dppA [H]

Identifier: 86609457

GI number: 86609457

Start: 2113202

End: 2114005

Strand: Direct

Name: dppA [H]

Synonym: CYB_2009

Alternate gene names: 86609457

Gene position: 2113202-2114005 (Clockwise)

Preceding gene: 86609455

Following gene: 86609465

Centisome position: 69.36

GC content: 60.07

Gene sequence:

>804_bases
ATGAAGGTCTATATCAGCGCCGATATCGAGGGGATCGCCGGCATCAGCCATTGGGATGAGGCCACCATCGGCCAGCCGGG
TTACGAGGCATTCCGAGAGCAGATGACCCGAGCAGTGATCGCGGCTTGTGAGGGATCCCTGGCTGCCGGAGCCACGCAGA
TCACGGTCAAAGATGCCCATGACTCCGGGCGAAACCTCATCCCCGAACGGTTGCCGGAGCCGGTGCAACTCATCCGCGGC
TGGAGCGGCCACCCCTACTGTATGGTGCAAGAGTTGGATCGCAGTTACGATGCCCTGCTCCTAATCGGCTATCATGCCCG
CGCCGGATCTGCTGCCAACCCCCTCGCCCACACCTACACCACCGAAGTTAGCCAAATCCGGCTGAACGGCCAGGCCATCG
CCGAGTTTCACCTGGTCAGCCTCACGGCTGCCTATGAGGGAGTCCCAGTTGTGTTTGTAGCCGGAGATGCGGAGGTGTGT
GCTGAAGCAAAAGCTTATGACGCCCAAATCGAGACGGTGGTCACCCACAAAGGAATGGGCCAGTCGGTCATTGCGCCACA
TCCGCAGCAAGTTTTGCGGGCCATCCGCCAAGGTGTAGAGGGATCCCTGAGGCGGCTGCCGGCCTACCGGCCTCGCCCAC
TGCCGGATCACTTTCAATTGGAAGTGGACTACAAGGATCCCGCTCGCGCCTACCGCAAGTCTTTTTATCCCGGCTGCCGG
TGGATTGCCGATTCCACGGTTCGGCTGGAAGTTTCCGAGTGGTTTGAGGTGTTGCGGGCTTTGGAGTTTATTGTGCTCAC
CTAG

Upstream 100 bases:

>100_bases
GGAAATAACCGCTTGGATCCCTTGTGCAGAGCGATGTTGAGCGGCATCTGAGGGTGGATAGAGCCCGACAGAATCCAATG
CTGAGTCTACTGAGCCAAGC

Downstream 100 bases:

>100_bases
CCAGGGATCCAAGCGGCATCTGGATGAGGCGAGCAGCAGCTTCCCTGAGGCTGGTCTCGGAAAGGTCAGACAGCTCAATC
CGGGCCCGAAGGCGATTGAA

Product: M55 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKVYISADIEGIAGISHWDEATIGQPGYEAFREQMTRAVIAACEGSLAAGATQITVKDAHDSGRNLIPERLPEPVQLIRG
WSGHPYCMVQELDRSYDALLLIGYHARAGSAANPLAHTYTTEVSQIRLNGQAIAEFHLVSLTAAYEGVPVVFVAGDAEVC
AEAKAYDAQIETVVTHKGMGQSVIAPHPQQVLRAIRQGVEGSLRRLPAYRPRPLPDHFQLEVDYKDPARAYRKSFYPGCR
WIADSTVRLEVSEWFEVLRALEFIVLT

Sequences:

>Translated_267_residues
MKVYISADIEGIAGISHWDEATIGQPGYEAFREQMTRAVIAACEGSLAAGATQITVKDAHDSGRNLIPERLPEPVQLIRG
WSGHPYCMVQELDRSYDALLLIGYHARAGSAANPLAHTYTTEVSQIRLNGQAIAEFHLVSLTAAYEGVPVVFVAGDAEVC
AEAKAYDAQIETVVTHKGMGQSVIAPHPQQVLRAIRQGVEGSLRRLPAYRPRPLPDHFQLEVDYKDPARAYRKSFYPGCR
WIADSTVRLEVSEWFEVLRALEFIVLT
>Mature_267_residues
MKVYISADIEGIAGISHWDEATIGQPGYEAFREQMTRAVIAACEGSLAAGATQITVKDAHDSGRNLIPERLPEPVQLIRG
WSGHPYCMVQELDRSYDALLLIGYHARAGSAANPLAHTYTTEVSQIRLNGQAIAEFHLVSLTAAYEGVPVVFVAGDAEVC
AEAKAYDAQIETVVTHKGMGQSVIAPHPQQVLRAIRQGVEGSLRRLPAYRPRPLPDHFQLEVDYKDPARAYRKSFYPGCR
WIADSTVRLEVSEWFEVLRALEFIVLT

Specific function: Hydrolyzes N-terminal residues in D-amino acid containing peptides. Among the tested substrates, the highest activities are with D-Ala-D-Ala and D-Ala-Gly-Gly. The physiological role is not clear [H]

COG id: COG2362

COG function: function code E; D-aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M55 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007035 [H]

Pfam domain/function: PF04951 Peptidase_M55 [H]

EC number: NA

Molecular weight: Translated: 29502; Mature: 29502

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYISADIEGIAGISHWDEATIGQPGYEAFREQMTRAVIAACEGSLAAGATQITVKDAH
CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
DSGRNLIPERLPEPVQLIRGWSGHPYCMVQELDRSYDALLLIGYHARAGSAANPLAHTYT
CCCCCCCHHHCCCHHHHHCCCCCCCEEEHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHH
TEVSQIRLNGQAIAEFHLVSLTAAYEGVPVVFVAGDAEVCAEAKAYDAQIETVVTHKGMG
HHHEEEEECCCEEEHHHEEEEEHHCCCCEEEEEECCHHHHHHHHHHHHHHEEEEECCCCC
QSVIAPHPQQVLRAIRQGVEGSLRRLPAYRPRPLPDHFQLEVDYKDPARAYRKSFYPGCR
CCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCE
WIADSTVRLEVSEWFEVLRALEFIVLT
EECCCEEEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVYISADIEGIAGISHWDEATIGQPGYEAFREQMTRAVIAACEGSLAAGATQITVKDAH
CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
DSGRNLIPERLPEPVQLIRGWSGHPYCMVQELDRSYDALLLIGYHARAGSAANPLAHTYT
CCCCCCCHHHCCCHHHHHCCCCCCCEEEHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHH
TEVSQIRLNGQAIAEFHLVSLTAAYEGVPVVFVAGDAEVCAEAKAYDAQIETVVTHKGMG
HHHEEEEECCCEEEHHHEEEEEHHCCCCEEEEEECCHHHHHHHHHHHHHHEEEEECCCCC
QSVIAPHPQQVLRAIRQGVEGSLRRLPAYRPRPLPDHFQLEVDYKDPARAYRKSFYPGCR
CCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCE
WIADSTVRLEVSEWFEVLRALEFIVLT
EECCCEEEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]