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The map label for this gene is sun [H]

Identifier: 86609413

GI number: 86609413

Start: 2058908

End: 2060281

Strand: Reverse

Name: sun [H]

Synonym: CYB_1963

Alternate gene names: 86609413

Gene position: 2060281-2058908 (Counterclockwise)

Preceding gene: 86609416

Following gene: 86609412

Centisome position: 67.62

GC content: 62.3

Gene sequence:

>1374_bases
ATGAACGCGCGCCAACTGGCTCTGTTGGCTCTGCAGAAAATCGAGCGCCAAAACGCCTATGCCGACCTGGTTCTGGGGCA
TTTGTTGGCCAACAGCAGCCTGATCCCCGCCGACCGGCATCTGGTCAGCGAGCTGGTGTATGGCATTACCCGCCGTCGCC
GCACCCTCGATGCCTTGATCGATTGCCTTGCCCAGCGTCCTGCCCACAAGCAGCCCCCCGATTTGCGACTGATTTTGCAT
CTCGGCCTCTACCAACTGGCTTTTTTGGATCAGATCCCGGCCAGTGCTGCCATCCATACCAGCGTGGAATTGGCCCGCCA
GATGGGGCTGGGATCCCTGACAGGGGTGGTGAACGGCATCTTGCGCGCCTACCAGCGGCAAGTGTTGGATCAGCCAGAGA
AGGATCCCCTCAAGCCCCTCGAGGACACTCTGCCAGCCGACCCAATTCAGGCTTTGGGGATCCGGCACAGCTTTCCCGAC
TGGTTGGTGAGCCTATGGTGGGAGCGCCTGGGGCCGGTGGAAACGGAGCAGTTGTGTGCTTGGTTTAATCAGCCACCCCA
CCTGGATTTGCGGGTCAACCCACTGCGGGCAGATGTGAATAAAGTCATTCAAGCCTTGGCAGCAGCCGGGATCCCTGCCC
TCCCCATCTCCGAGGTGCCGGGTGCCTTGCGACTTCAGGATCATGCCGGCGACATCACGGCCCTGCCCGGCTTTGCCCAG
GGTTGGTGGAGCGTTCAAGATGCCAGTGCCCAGCAGGTGGTGCATTGGCTGGATCCCCAGCCAGGGGAGCGGGTGATCGA
CTGCTGCGCTGCTCCGGGCGGCAAGACCACCCAAATAGCCCAACACATGCAGGATCGGGGGGAAATCTGGGCTTTGGATC
GCCACCCCCACCGTCTGCGGCGCCTGGAGGAAAATAGGCAGCGCCTGGGCTTGAGCTCAATCCGTCCCCTGGCCATCGAC
CTGTTATCCCTGAGCGCTGCTGCCGATCGCGTCAGCGGGACGGAGTCCTTACCCCCTGCCCCCTTGCCCCCCTGGCAGAG
TGCTGACCGCGTACTGCTGGATGCCCCCTGCTCCGGCCTAGGCACCTTGCACCGCCATGCTGACGCTCGCTGGCGGCAGA
CTCCAGAGCGGATCCCTGAATTGGCCCACCTGCAAGCTCAGCTTCTGCAGGTGGCAGCCCGTTGGCTTAAGCCGGGCGGA
GTGTTGGTGTACGCCACCTGTACGCTGCATCCTGCCGAAAACGAGGAGATCATTCAAGCCTTTCTCGACAGCCACCCCAA
TTGGGCTGCTGAAGGGGATCCCCTGCTCATCTGGCCCCACCGGCAGGATCGGGATGGATTTTTTATCCAACGGCTGCGCC
GCTCCGGTTACTAA

Upstream 100 bases:

>100_bases
GTATCGCCTGGGAGCGGCCTTGCTCCAGCGGAGATCTGGATCTCTAGACCCTAAAGTGCTCCACACCGCTGACGCGATGG
GAGAACATCCTGAGATGACT

Downstream 100 bases:

>100_bases
CTCCCCTCTCCCTCTGGGAGAGGGGCTGGGGGTGAGGGCAGCAACGCCGAAGACTTGGGGAGTACCTTAACCATTGCCAC
ATGGCTTCTGAGCTGCTGAC

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MNARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALIDCLAQRPAHKQPPDLRLILH
LGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGILRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPD
WLVSLWWERLGPVETEQLCAWFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGALRLQDHAGDITALPGFAQ
GWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGEIWALDRHPHRLRRLEENRQRLGLSSIRPLAID
LLSLSAAADRVSGTESLPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGG
VLVYATCTLHPAENEEIIQAFLDSHPNWAAEGDPLLIWPHRQDRDGFFIQRLRRSGY

Sequences:

>Translated_457_residues
MNARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALIDCLAQRPAHKQPPDLRLILH
LGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGILRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPD
WLVSLWWERLGPVETEQLCAWFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGALRLQDHAGDITALPGFAQ
GWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGEIWALDRHPHRLRRLEENRQRLGLSSIRPLAID
LLSLSAAADRVSGTESLPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGG
VLVYATCTLHPAENEEIIQAFLDSHPNWAAEGDPLLIWPHRQDRDGFFIQRLRRSGY
>Mature_457_residues
MNARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALIDCLAQRPAHKQPPDLRLILH
LGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGILRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPD
WLVSLWWERLGPVETEQLCAWFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGALRLQDHAGDITALPGFAQ
GWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGEIWALDRHPHRLRRLEENRQRLGLSSIRPLAID
LLSLSAAADRVSGTESLPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGG
VLVYATCTLHPAENEEIIQAFLDSHPNWAAEGDPLLIWPHRQDRDGFFIQRLRRSGY

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=185, Percent_Identity=43.2432432432432, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI76150625, Length=330, Percent_Identity=29.6969696969697, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI76150623, Length=330, Percent_Identity=29.6969696969697, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI270288818, Length=213, Percent_Identity=30.9859154929577, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI8922322, Length=213, Percent_Identity=30.9859154929577, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI23199998, Length=213, Percent_Identity=30.9859154929577, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI270288816, Length=213, Percent_Identity=30.9859154929577, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI11545785, Length=174, Percent_Identity=36.7816091954023, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI39995082, Length=175, Percent_Identity=30.2857142857143, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI301336155, Length=175, Percent_Identity=30.2857142857143, Blast_Score=76, Evalue=8e-14,
Organism=Escherichia coli, GI2367212, Length=457, Percent_Identity=33.9168490153173, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI87081985, Length=320, Percent_Identity=30.625, Blast_Score=123, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17536757, Length=353, Percent_Identity=24.929178470255, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71998419, Length=207, Percent_Identity=29.4685990338164, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115534021, Length=207, Percent_Identity=29.4685990338164, Blast_Score=90, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6324268, Length=324, Percent_Identity=27.7777777777778, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6319447, Length=186, Percent_Identity=29.0322580645161, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24668781, Length=244, Percent_Identity=33.1967213114754, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21356513, Length=256, Percent_Identity=32.03125, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI22024126, Length=294, Percent_Identity=27.2108843537415, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21356579, Length=186, Percent_Identity=27.4193548387097, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21355201, Length=174, Percent_Identity=29.8850574712644, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920494, Length=170, Percent_Identity=31.1764705882353, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 50901; Mature: 50901

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DCLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPDWLVSLWWERLGPVETEQLCA
HHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
WFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGALRLQDHAGDITALPGFAQ
HHCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEECCCCCEEECCCCCC
GWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGEIWALDRHPHRLR
CCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCHHHHH
RLEENRQRLGLSSIRPLAIDLLSLSAAADRVSGTESLPPAPLPPWQSADRVLLDAPCSGL
HHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
GTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGGVLVYATCTLHPAENEEIIQA
HHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHH
FLDSHPNWAAEGDPLLIWPHRQDRDGFFIQRLRRSGY
HHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNARQLALLALQKIERQNAYADLVLGHLLANSSLIPADRHLVSELVYGITRRRRTLDALI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DCLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLGSLTGVVNGI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPDWLVSLWWERLGPVETEQLCA
HHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
WFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGALRLQDHAGDITALPGFAQ
HHCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEECCCCCEEECCCCCC
GWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGEIWALDRHPHRLR
CCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCHHHHH
RLEENRQRLGLSSIRPLAIDLLSLSAAADRVSGTESLPPAPLPPWQSADRVLLDAPCSGL
HHHHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
GTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGGVLVYATCTLHPAENEEIIQA
HHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHH
FLDSHPNWAAEGDPLLIWPHRQDRDGFFIQRLRRSGY
HHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]