Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609402

Identifier: 86609402

GI number: 86609402

Start: 2038635

End: 2040356

Strand: Reverse

Name: 86609402

Synonym: CYB_1946

Alternate gene names: NA

Gene position: 2040356-2038635 (Counterclockwise)

Preceding gene: 86609404

Following gene: 86609401

Centisome position: 66.97

GC content: 61.27

Gene sequence:

>1722_bases
GTGCTGAGACTGCCGAAAAACCAAGGGATCCGCTGGCTTGCGGGTGTGCTGGGCGCGCTGATGTTGCTGGGATCCGGAAT
CACGGCCCAGGCTCAGTTCTTGTGGCCCGGCCATTCCCTTTTCCCCAGCTCTGGTTCCGTAGACAGTACGGAACAGAGGG
GATCCCACTTGGCTGCTCGGCTCGACGCCTACTGCCGACAGCCGCCCGAGGAGGTAGCGCGCAAGGCTCAACTGCGCCAG
CAGGCTGCCCAGTCGAATGCTGCTTGGGCCGAGTACACCCAAGTTTTGGCCGAACATGGCGCTGCCTTGATCGCCTGCCG
CAGCCAACGCTGGCCCCAGATCCAGGCCATTTGGGTACGTCTGCACCCTTGTGATGCCAATCCGGGCGTGTTGGATCAGG
TATTCGACCAAGTGGTAAACCTGGGCTACAACCGCGTCTTTATCGAGACCTTTTACGATGGTCGCTCCATTTTGCCGGAT
GGCGCAGGAGGGATCTGGCCCAGCTTACAGCCCAACGCCGACTTGTTGGATCTGGCTCTGAAGGCGGCGCGACGCCGCGG
TTTGTCTGCTTATGCTTGGGTGTTTTCCCTCAATTTCGGTTACAGCTACGGACAACGGCCCGATCGACAGGTGGCCCTGG
CCCGCAACGGTCGTGGCATAACCACTGTTCTGGATCCGGCAACAGCCCTTGGGGAAGATTTGGGCAGCCCGGATGAGGTG
TTTGTGGATCCCTTTCATCCCTTGGCACGGCGGGATTTTGCCGAGTTGGTCCGCCGCATCCTACAGCGACAGCCGGATGG
GATCCTTTTCGACTACATTCGCTATCCGCGTGGCTCAGGGGGATCCAGCGTGGCAGCCACCGTCCGAGACTTGTGGATTC
ATGGAGAGGCCGCCCGGAAAGCCTACCTCAATTTGGCAGAAAACCCGGCGGGTCGGGCATTGCTGGAGCGCTACCTAAGC
CAGGGCTACATTGCAGTGGCAGATGTTCTCCATCTGGATGCCACCTATGCCGAAGAGCCCAGGTGGCGGCAGCCAGGGGA
TCCCTGGCCCAGCCCGACCGAGAAATGGGCGCTTTCCCCAGAGTTACTGGACTGGGCTGCCCAAGACATGGCCAGCAGGA
ATTGGCAGGGGGATCAGCTTTCCTCTGCAAAAGATTTACCAGAGAGTCTGGAGAAACCGGCGGATTCCAGTTCTGAGGCA
GCAGCACCAACTCCTGCCCCTTCCCCCACCCCCAGCGCCGCCGTTCGCCAAGAACGTTGGCAGCAGCAGCTTTGGCAGCT
GAGCGTCGAGTTTGCCCGCTACGGCGTTCTCGATTATCTACAGCAGGCCGCCCAACCCGCCCAGAGGCTGGGGATCCCGG
TGGGGGCTGTCTTCTTCCCAGAAGGCAACCAAGCAGTAGGAGAAGGGTTTGACGCTCGTCTGCAACCCTGGGACCGCTTT
GATCCGGGTATGGAATGGCACCCAATGGCCTATGCCAAGTGCGAGGATAGCTCCTGTGTGGCGCAGCAGGTGGAGCAGGT
CCTGGCTGTGGCCTCTCCCCAAACCTTTGTCTGCCCGGCCATTGCCGGTCTATGGGGACAAGCCCAGCGGCAACGCCCCA
GCCTGGAAACCCAAACAGCAGAGCTGGCCCGCCGCTTCCCGCAGTTGCCCTGTGTGAGTCACTTCGCCCTCTCCTGGATC
GAGCCGGAGCTGGAGCGCAGCCGTCGCACCTGTCAACTCTAA

Upstream 100 bases:

>100_bases
GGATTGCGCCGGTGTGGGCACGGGCGGCTGTTTTTTTTCAATAGCCGCTCTCTGGGCAGGAGAAGAGTACGATCGGGGCC
ATTCTCGGTGGAGGTTGAGG

Downstream 100 bases:

>100_bases
CGCCCATCCCAATCTGAAAGTTAGGAATTCTGAACTTATGAGCCCTGAGCAATTTGATCTGATTAACCGCCTGTTTCAAC
TGACCTTTCAGATCGGGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 573; Mature: 573

Protein sequence:

>573_residues
MLRLPKNQGIRWLAGVLGALMLLGSGITAQAQFLWPGHSLFPSSGSVDSTEQRGSHLAARLDAYCRQPPEEVARKAQLRQ
QAAQSNAAWAEYTQVLAEHGAALIACRSQRWPQIQAIWVRLHPCDANPGVLDQVFDQVVNLGYNRVFIETFYDGRSILPD
GAGGIWPSLQPNADLLDLALKAARRRGLSAYAWVFSLNFGYSYGQRPDRQVALARNGRGITTVLDPATALGEDLGSPDEV
FVDPFHPLARRDFAELVRRILQRQPDGILFDYIRYPRGSGGSSVAATVRDLWIHGEAARKAYLNLAENPAGRALLERYLS
QGYIAVADVLHLDATYAEEPRWRQPGDPWPSPTEKWALSPELLDWAAQDMASRNWQGDQLSSAKDLPESLEKPADSSSEA
AAPTPAPSPTPSAAVRQERWQQQLWQLSVEFARYGVLDYLQQAAQPAQRLGIPVGAVFFPEGNQAVGEGFDARLQPWDRF
DPGMEWHPMAYAKCEDSSCVAQQVEQVLAVASPQTFVCPAIAGLWGQAQRQRPSLETQTAELARRFPQLPCVSHFALSWI
EPELERSRRTCQL

Sequences:

>Translated_573_residues
MLRLPKNQGIRWLAGVLGALMLLGSGITAQAQFLWPGHSLFPSSGSVDSTEQRGSHLAARLDAYCRQPPEEVARKAQLRQ
QAAQSNAAWAEYTQVLAEHGAALIACRSQRWPQIQAIWVRLHPCDANPGVLDQVFDQVVNLGYNRVFIETFYDGRSILPD
GAGGIWPSLQPNADLLDLALKAARRRGLSAYAWVFSLNFGYSYGQRPDRQVALARNGRGITTVLDPATALGEDLGSPDEV
FVDPFHPLARRDFAELVRRILQRQPDGILFDYIRYPRGSGGSSVAATVRDLWIHGEAARKAYLNLAENPAGRALLERYLS
QGYIAVADVLHLDATYAEEPRWRQPGDPWPSPTEKWALSPELLDWAAQDMASRNWQGDQLSSAKDLPESLEKPADSSSEA
AAPTPAPSPTPSAAVRQERWQQQLWQLSVEFARYGVLDYLQQAAQPAQRLGIPVGAVFFPEGNQAVGEGFDARLQPWDRF
DPGMEWHPMAYAKCEDSSCVAQQVEQVLAVASPQTFVCPAIAGLWGQAQRQRPSLETQTAELARRFPQLPCVSHFALSWI
EPELERSRRTCQL
>Mature_573_residues
MLRLPKNQGIRWLAGVLGALMLLGSGITAQAQFLWPGHSLFPSSGSVDSTEQRGSHLAARLDAYCRQPPEEVARKAQLRQ
QAAQSNAAWAEYTQVLAEHGAALIACRSQRWPQIQAIWVRLHPCDANPGVLDQVFDQVVNLGYNRVFIETFYDGRSILPD
GAGGIWPSLQPNADLLDLALKAARRRGLSAYAWVFSLNFGYSYGQRPDRQVALARNGRGITTVLDPATALGEDLGSPDEV
FVDPFHPLARRDFAELVRRILQRQPDGILFDYIRYPRGSGGSSVAATVRDLWIHGEAARKAYLNLAENPAGRALLERYLS
QGYIAVADVLHLDATYAEEPRWRQPGDPWPSPTEKWALSPELLDWAAQDMASRNWQGDQLSSAKDLPESLEKPADSSSEA
AAPTPAPSPTPSAAVRQERWQQQLWQLSVEFARYGVLDYLQQAAQPAQRLGIPVGAVFFPEGNQAVGEGFDARLQPWDRF
DPGMEWHPMAYAKCEDSSCVAQQVEQVLAVASPQTFVCPAIAGLWGQAQRQRPSLETQTAELARRFPQLPCVSHFALSWI
EPELERSRRTCQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63534; Mature: 63534

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLPKNQGIRWLAGVLGALMLLGSGITAQAQFLWPGHSLFPSSGSVDSTEQRGSHLAAR
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
LDAYCRQPPEEVARKAQLRQQAAQSNAAWAEYTQVLAEHGAALIACRSQRWPQIQAIWVR
HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEE
LHPCDANPGVLDQVFDQVVNLGYNRVFIETFYDGRSILPDGAGGIWPSLQPNADLLDLAL
EEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH
KAARRRGLSAYAWVFSLNFGYSYGQRPDRQVALARNGRGITTVLDPATALGEDLGSPDEV
HHHHHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCHHHHHHHCCCCCCE
FVDPFHPLARRDFAELVRRILQRQPDGILFDYIRYPRGSGGSSVAATVRDLWIHGEAARK
EECCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
AYLNLAENPAGRALLERYLSQGYIAVADVLHLDATYAEEPRWRQPGDPWPSPTEKWALSP
HHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHCCCH
ELLDWAAQDMASRNWQGDQLSSAKDLPESLEKPADSSSEAAAPTPAPSPTPSAAVRQERW
HHHHHHHHHHHHCCCCCCHHCCHHCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
QQQLWQLSVEFARYGVLDYLQQAAQPAQRLGIPVGAVFFPEGNQAVGEGFDARLQPWDRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCCCCCCCCC
DPGMEWHPMAYAKCEDSSCVAQQVEQVLAVASPQTFVCPAIAGLWGQAQRQRPSLETQTA
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
ELARRFPQLPCVSHFALSWIEPELERSRRTCQL
HHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCC
>Mature Secondary Structure
MLRLPKNQGIRWLAGVLGALMLLGSGITAQAQFLWPGHSLFPSSGSVDSTEQRGSHLAAR
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
LDAYCRQPPEEVARKAQLRQQAAQSNAAWAEYTQVLAEHGAALIACRSQRWPQIQAIWVR
HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEE
LHPCDANPGVLDQVFDQVVNLGYNRVFIETFYDGRSILPDGAGGIWPSLQPNADLLDLAL
EEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH
KAARRRGLSAYAWVFSLNFGYSYGQRPDRQVALARNGRGITTVLDPATALGEDLGSPDEV
HHHHHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCHHHHHHHCCCCCCE
FVDPFHPLARRDFAELVRRILQRQPDGILFDYIRYPRGSGGSSVAATVRDLWIHGEAARK
EECCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH
AYLNLAENPAGRALLERYLSQGYIAVADVLHLDATYAEEPRWRQPGDPWPSPTEKWALSP
HHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCHHHCCCH
ELLDWAAQDMASRNWQGDQLSSAKDLPESLEKPADSSSEAAAPTPAPSPTPSAAVRQERW
HHHHHHHHHHHHCCCCCCHHCCHHCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
QQQLWQLSVEFARYGVLDYLQQAAQPAQRLGIPVGAVFFPEGNQAVGEGFDARLQPWDRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCCCCCCCCC
DPGMEWHPMAYAKCEDSSCVAQQVEQVLAVASPQTFVCPAIAGLWGQAQRQRPSLETQTA
CCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
ELARRFPQLPCVSHFALSWIEPELERSRRTCQL
HHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA