Click here to switch to the map view.

The map label for this gene is glcD [H]

Identifier: 86609367

GI number: 86609367

Start: 1995760

End: 1997127

Strand: Reverse

Name: glcD [H]

Synonym: CYB_1911

Alternate gene names: 86609367

Gene position: 1997127-1995760 (Counterclockwise)

Preceding gene: 86609368

Following gene: 86609363

Centisome position: 65.55

GC content: 60.38

Gene sequence:

>1368_bases
ATGATCGTTGCCGCTCCTGACAAGCTGCAGGCTTTGCCTTCTGACTTAGAGGGTATTGAGATCATCACTGATCCGGCTCA
GGTGGCCAAGTTGTCGTTGGATTTTTACCACTACAGCCCCGTGCTGAGCCGACAACTGAGCGACAAGCGGGGAGATTTGG
TGGTGCGCCCCGCCGATGAGGCCGAGGTGATGCGGGTGGCAGCGGCCTGTGCCAGGCTGCGGATCCCGGTTACGGTGCGC
GGTGCCGGTACCGGTAATTACGGCCAATGTATCCCGCTGGCCGGGGGTGTGATCCTGGACATGGGCAAGCTCAACCAGGT
GCTTTGGGCAAAGCCGGGCTTGGCGCGGGTGCAGGCGGGGGCCAAGTTGATGGCCATCGACAAACACACCCGGGAGATGG
GCTGGGAGATCCGCATGGCTCCTTCCACCTATCGCACGGCCACCATCGGGGGGTTCATTGCCGGCGGCAGCGGCGGCATT
GGCTCTGTGACCTACGGCCAACTGCGGGATCGCGGCAACATCTTGGGTTTGCGGGTGGTCACCCTGGAGGAAGAGCCGCG
GGTGCTGGAGCTGCGGGGAGACGAGGTGTTCCAAGTGAGCCATGCCTGGGGCCTCAATGGGATCATCACCGAGGTGGAGA
TCCCGCTGGCGCCTGCTTACCCTTGGGCAGAGCTGGTGGTGGCTTTTCCCCCCGCAGGAGGGTTTATGCCCTGTGCCCAT
TTTGGCCAGGCCCTGGGCGATGCGGATGGGATCATCAAGAAGATGATCAGCCTGCACGCTTGGCCGATCCCCAGCTACTT
TGCACCGCTGCGGGGTCATTTGCCAGAAGGATCCGCTGTGGCCCTGTTGATGGTGGCCGAATGCAGCCTGGAGCCGCTGT
TGGAGCTTGTCCGGGAACATGGGGGCCAAGTGGTTTACAACAAAACGGCCCAGGAGGCCAGCAAGGGGATCTCGCTGGGG
GAATTTTCTTGGAACCACACCACTTTGCACTGCCGCAGCGTGGATCCCAGCCTGACTTATTTACAATCGGCTTTTCCTGC
CGATCGGGAGCTGAAGCTGGTGCAGCACATGTACGAGTATTTTGGCGACGAAGTGCTGATGCACCTGGAGTGGATTCGCA
TCAACGGGCAAGCTACCCCCGTCGGCCTGCAAATTGTCCGCTTTACCACCGAAGAGCGCCTGAACGAGATCATGCGCTAC
CACGAAGAGCAGGGAGTATTTATTGCCAACCCCCACACTTTCATCATCGAAGACGGCGGGCGCAAAGTGATGGATCCGCG
CCAGATTCGTTTTAAAGAAGAAGTGGATCCCTATGGCCTGCTCAATCCGGGCAAGATGCGCACCTGGCAGGAGCGCGCCT
CTGCTTGA

Upstream 100 bases:

>100_bases
GACAGGGATCCTTCCCATACTGTTCTCGGCAAACCCTTTTGCAGGCAATTTCTGCCGATGATGGAGTCTGAAGAACCGTT
GCACCCAAATACGGATACCT

Downstream 100 bases:

>100_bases
GGAATAGCAACAGTAGCACAGCAATTGGCCTTGGTCTATCTGTATTGCCCATGTTTAATCCCTGATGGATTGTCTGGGCA
GGACAACACCAGTCCAAAGC

Product: FAD-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MIVAAPDKLQALPSDLEGIEIITDPAQVAKLSLDFYHYSPVLSRQLSDKRGDLVVRPADEAEVMRVAAACARLRIPVTVR
GAGTGNYGQCIPLAGGVILDMGKLNQVLWAKPGLARVQAGAKLMAIDKHTREMGWEIRMAPSTYRTATIGGFIAGGSGGI
GSVTYGQLRDRGNILGLRVVTLEEEPRVLELRGDEVFQVSHAWGLNGIITEVEIPLAPAYPWAELVVAFPPAGGFMPCAH
FGQALGDADGIIKKMISLHAWPIPSYFAPLRGHLPEGSAVALLMVAECSLEPLLELVREHGGQVVYNKTAQEASKGISLG
EFSWNHTTLHCRSVDPSLTYLQSAFPADRELKLVQHMYEYFGDEVLMHLEWIRINGQATPVGLQIVRFTTEERLNEIMRY
HEEQGVFIANPHTFIIEDGGRKVMDPRQIRFKEEVDPYGLLNPGKMRTWQERASA

Sequences:

>Translated_455_residues
MIVAAPDKLQALPSDLEGIEIITDPAQVAKLSLDFYHYSPVLSRQLSDKRGDLVVRPADEAEVMRVAAACARLRIPVTVR
GAGTGNYGQCIPLAGGVILDMGKLNQVLWAKPGLARVQAGAKLMAIDKHTREMGWEIRMAPSTYRTATIGGFIAGGSGGI
GSVTYGQLRDRGNILGLRVVTLEEEPRVLELRGDEVFQVSHAWGLNGIITEVEIPLAPAYPWAELVVAFPPAGGFMPCAH
FGQALGDADGIIKKMISLHAWPIPSYFAPLRGHLPEGSAVALLMVAECSLEPLLELVREHGGQVVYNKTAQEASKGISLG
EFSWNHTTLHCRSVDPSLTYLQSAFPADRELKLVQHMYEYFGDEVLMHLEWIRINGQATPVGLQIVRFTTEERLNEIMRY
HEEQGVFIANPHTFIIEDGGRKVMDPRQIRFKEEVDPYGLLNPGKMRTWQERASA
>Mature_455_residues
MIVAAPDKLQALPSDLEGIEIITDPAQVAKLSLDFYHYSPVLSRQLSDKRGDLVVRPADEAEVMRVAAACARLRIPVTVR
GAGTGNYGQCIPLAGGVILDMGKLNQVLWAKPGLARVQAGAKLMAIDKHTREMGWEIRMAPSTYRTATIGGFIAGGSGGI
GSVTYGQLRDRGNILGLRVVTLEEEPRVLELRGDEVFQVSHAWGLNGIITEVEIPLAPAYPWAELVVAFPPAGGFMPCAH
FGQALGDADGIIKKMISLHAWPIPSYFAPLRGHLPEGSAVALLMVAECSLEPLLELVREHGGQVVYNKTAQEASKGISLG
EFSWNHTTLHCRSVDPSLTYLQSAFPADRELKLVQHMYEYFGDEVLMHLEWIRINGQATPVGLQIVRFTTEERLNEIMRY
HEEQGVFIANPHTFIIEDGGRKVMDPRQIRFKEEVDPYGLLNPGKMRTWQERASA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789351, Length=254, Percent_Identity=31.8897637795276, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787977, Length=137, Percent_Identity=35.036496350365, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17534361, Length=179, Percent_Identity=27.9329608938547, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18921117, Length=135, Percent_Identity=32.5925925925926, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24639277, Length=135, Percent_Identity=32.5925925925926, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24639275, Length=135, Percent_Identity=32.5925925925926, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50107; Mature: 50107

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVAAPDKLQALPSDLEGIEIITDPAQVAKLSLDFYHYSPVLSRQLSDKRGDLVVRPADE
CEEECCHHHHHCCCCCCCEEEEECCHHHHEEEEEHEECCHHHHHHHCCCCCCEEEECCCH
AEVMRVAAACARLRIPVTVRGAGTGNYGQCIPLAGGVILDMGKLNQVLWAKPGLARVQAG
HHHHHHHHHHHHEECCEEEEECCCCCCCCEEEECCCEEEEHHHCCHHHCCCCCHHHHHCC
AKLMAIDKHTREMGWEIRMAPSTYRTATIGGFIAGGSGGIGSVTYGQLRDRGNILGLRVV
CEEEEEEHHHHHCCCEEEECCCCCCEEEECCEEECCCCCCCCCCHHHHHCCCCEEEEEEE
TLEEEPRVLELRGDEVFQVSHAWGLNGIITEVEIPLAPAYPWAELVVAFPPAGGFMPCAH
EECCCCCEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHEEEEECCCCCCCCHHH
FGQALGDADGIIKKMISLHAWPIPSYFAPLRGHLPEGSAVALLMVAECSLEPLLELVREH
HHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHH
GGQVVYNKTAQEASKGISLGEFSWNHTTLHCRSVDPSLTYLQSAFPADRELKLVQHMYEY
CCEEEEECCHHHHHCCCEECCCCCCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
FGDEVLMHLEWIRINGQATPVGLQIVRFTTEERLNEIMRYHEEQGVFIANPHTFIIEDGG
HCCCEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHCCEEEECCEEEEEECCC
RKVMDPRQIRFKEEVDPYGLLNPGKMRTWQERASA
CCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MIVAAPDKLQALPSDLEGIEIITDPAQVAKLSLDFYHYSPVLSRQLSDKRGDLVVRPADE
CEEECCHHHHHCCCCCCCEEEEECCHHHHEEEEEHEECCHHHHHHHCCCCCCEEEECCCH
AEVMRVAAACARLRIPVTVRGAGTGNYGQCIPLAGGVILDMGKLNQVLWAKPGLARVQAG
HHHHHHHHHHHHEECCEEEEECCCCCCCCEEEECCCEEEEHHHCCHHHCCCCCHHHHHCC
AKLMAIDKHTREMGWEIRMAPSTYRTATIGGFIAGGSGGIGSVTYGQLRDRGNILGLRVV
CEEEEEEHHHHHCCCEEEECCCCCCEEEECCEEECCCCCCCCCCHHHHHCCCCEEEEEEE
TLEEEPRVLELRGDEVFQVSHAWGLNGIITEVEIPLAPAYPWAELVVAFPPAGGFMPCAH
EECCCCCEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHEEEEECCCCCCCCHHH
FGQALGDADGIIKKMISLHAWPIPSYFAPLRGHLPEGSAVALLMVAECSLEPLLELVREH
HHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHH
GGQVVYNKTAQEASKGISLGEFSWNHTTLHCRSVDPSLTYLQSAFPADRELKLVQHMYEY
CCEEEEECCHHHHHCCCEECCCCCCCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHH
FGDEVLMHLEWIRINGQATPVGLQIVRFTTEERLNEIMRYHEEQGVFIANPHTFIIEDGG
HCCCEEEEEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHCCEEEECCEEEEEECCC
RKVMDPRQIRFKEEVDPYGLLNPGKMRTWQERASA
CCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]