Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609322

Identifier: 86609322

GI number: 86609322

Start: 1949759

End: 1950352

Strand: Reverse

Name: 86609322

Synonym: CYB_1866

Alternate gene names: NA

Gene position: 1950352-1949759 (Counterclockwise)

Preceding gene: 86609323

Following gene: 86609321

Centisome position: 64.02

GC content: 59.6

Gene sequence:

>594_bases
ATGAAAGCTATCTTAACAGCAGCCCTTATTGGCCTGGCCGGGATCCCTGCGTTGGCCCCCTTGCCCAGTTCGGCTCAGCC
GCTTTTTGAATTGGGTGCCTACCGCCTTGAGCAGGGGACGATTATCCCGGTCGGCAGCCTGAGTAGCGAAGGGCCGCAAT
ACTTTTACCCCGACACCGTCTATCCCCTGGAAGTGGCCGTTACTCAGAACATTTTTGACAGCCAGGGGCGCTTGGTGATC
CCGGCGGGTAGCCGCATTTTTGGACAGATGGAACCTGCACCGGGCGGATCCCGCTTTGTCGGCACTTCCATTGTTCTCGG
CGGTCGTACCTACAGCCTGCGGGCTTCCTCCAACATCCTCCACGACGAAAAGGATCCCCGTCAGTATTCGGCTGAGGCCA
TCGCTCAGGATGCAGCCATTGGGGCAGCCGCGGGAGCCATTTTGGGGGCCATCACGGGCAGAGTATCAGTGGGCAATGTC
CTGGGAGGTGCCGCGACCGGAGTGGTGGTGGGCAATGTTACCGCTCCGCAGGTGGTGGTGCTGCGCCCCGGCCAATCTTT
CAATCTAACTTTGGAAGCTCCGCTGACTTTGTGA

Upstream 100 bases:

>100_bases
GTGGAGAGAAGCTGAGACAAGGAAGCAAATTGACTTGGAATAGCTTCAGGCAACTGCTCAGAACTCGGCAGAACTTGGAG
AAGCATTGGAGACTCTACTC

Downstream 100 bases:

>100_bases
GGTGCCGTTTGGAGATTCCTCTGGGAGTGTTGAGGGTCGGCAACTTGTGATTCACTGGGGATCAGACTGCGGATCCCTGT
TTTCATGGCTACTGAATCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MKAILTAALIGLAGIPALAPLPSSAQPLFELGAYRLEQGTIIPVGSLSSEGPQYFYPDTVYPLEVAVTQNIFDSQGRLVI
PAGSRIFGQMEPAPGGSRFVGTSIVLGGRTYSLRASSNILHDEKDPRQYSAEAIAQDAAIGAAAGAILGAITGRVSVGNV
LGGAATGVVVGNVTAPQVVVLRPGQSFNLTLEAPLTL

Sequences:

>Translated_197_residues
MKAILTAALIGLAGIPALAPLPSSAQPLFELGAYRLEQGTIIPVGSLSSEGPQYFYPDTVYPLEVAVTQNIFDSQGRLVI
PAGSRIFGQMEPAPGGSRFVGTSIVLGGRTYSLRASSNILHDEKDPRQYSAEAIAQDAAIGAAAGAILGAITGRVSVGNV
LGGAATGVVVGNVTAPQVVVLRPGQSFNLTLEAPLTL
>Mature_197_residues
MKAILTAALIGLAGIPALAPLPSSAQPLFELGAYRLEQGTIIPVGSLSSEGPQYFYPDTVYPLEVAVTQNIFDSQGRLVI
PAGSRIFGQMEPAPGGSRFVGTSIVLGGRTYSLRASSNILHDEKDPRQYSAEAIAQDAAIGAAAGAILGAITGRVSVGNV
LGGAATGVVVGNVTAPQVVVLRPGQSFNLTLEAPLTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20140; Mature: 20140

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAILTAALIGLAGIPALAPLPSSAQPLFELGAYRLEQGTIIPVGSLSSEGPQYFYPDTV
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEECCCCEEEECCCCCCCCCEECCCCC
YPLEVAVTQNIFDSQGRLVIPAGSRIFGQMEPAPGGSRFVGTSIVLGGRTYSLRASSNIL
CEEEEEEECCHHCCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCC
HDEKDPRQYSAEAIAQDAAIGAAAGAILGAITGRVSVGNVLGGAATGVVVGNVTAPQVVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCCEEEE
LRPGQSFNLTLEAPLTL
ECCCCCEEEEEECCCCC
>Mature Secondary Structure
MKAILTAALIGLAGIPALAPLPSSAQPLFELGAYRLEQGTIIPVGSLSSEGPQYFYPDTV
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCEEECCCCEEEECCCCCCCCCEECCCCC
YPLEVAVTQNIFDSQGRLVIPAGSRIFGQMEPAPGGSRFVGTSIVLGGRTYSLRASSNIL
CEEEEEEECCHHCCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEECCEEEEEECCCCCC
HDEKDPRQYSAEAIAQDAAIGAAAGAILGAITGRVSVGNVLGGAATGVVVGNVTAPQVVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCCEEEE
LRPGQSFNLTLEAPLTL
ECCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA