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The map label for this gene is ygeR [C]

Identifier: 86609277

GI number: 86609277

Start: 1907066

End: 1908685

Strand: Reverse

Name: ygeR [C]

Synonym: CYB_1820

Alternate gene names: 86609277

Gene position: 1908685-1907066 (Counterclockwise)

Preceding gene: 86609283

Following gene: 86609276

Centisome position: 62.65

GC content: 61.73

Gene sequence:

>1620_bases
GTGAGCACCCTTTCCCCCCCACCCCCAAAGGGCTCGGCAGGGATCCCTTCAGAACAGTCCTGGACTTCTGCGGATTCATC
TGCCGAGGAAGCCTATCTTCTGGAGTGGGCTCCAGCCCCTCTCTCTGGGCGGTCGAAGCCAAGATGGGTTGGTTTGGCCC
TCTCTCTCAGCTTAACGGGCCTGGTATGGCTTCTGAAGCTGGAGGCGGATCCCTGCGCAGAAGCTGGGGAAGAGCAGCTG
CCGGCCACCCCCAGGTGCCCAACCGAGCCTGAGACAGCCCATCCAGAGCCGGGGGATTCTGCTCCTGCGCGTCGGGGATA
TCCGGCTTGGGCCACTGGTCTTTTGCTGATGCTGGGCTTGGCCGGAGTCGCTACCCTACAGCAGCGACAGTTGAATCGCC
CCCTGTCTCCGGCGGTAGAGCCGATCCCACCCTCTGTGCATACGCTATCTGGCGCTCTGCAGCAAAACTACGAGCGGAAA
AAGGAGCAGCTGCGCCAAGCCTTCGCAGAAGGGCGAATCCCGACAGGAGAAGGGCCCAGAGGCATTCTGGAGCATGAAAT
TCAGCCGGGGGAAACCCTCTGGCAACTGACCCAGATGTATCAGCTCGACGCGGCTGCCATCACCGTCTCCAATGGTATTC
AGGCCAGTACTGAGCTGAAGCCGGGGCAAGTTCTCCTCATCCCCAGCCAACCGGGATTGATCTACACCGTCAAGCAGGGA
GACACACTGGAGGACATTGCCAACCGCTACCGAGTTCCCCAGCAGCGGATTATCGAAGCGACTCCTCTGGATCGCCCGGA
ATATCTGCGCATTGGCCAACGCCTGCTCATCCCCGGCGATGTGGGCGAGTTGATCCAGCGTCAGAAGGAGATGATCGCTG
CCCAGAAAGCTCGCGAAGAGGAAGAGCGCCGCCAGCAAGAGGAGGAAGCCCAACGCCAAGCCGAAGCCCAAGCTCGATTA
CAGGCGGAACAGCAACGCCGGGCCCAGCAAATGGAACAAGAACGGCAGGCCCTCTTGGCCGGTGGATCCCTGACCCACAC
AGTTGGAGCCAGTGACACCATCGAACGGATCGCCGCCCGCTATGGGGTAACTCAGCGATCCATTATTCAAGCCAACAACT
TGCGCAATCCCCACTGGCTGCGCATTGGCCAACGCCTTACGATTCCGGCGCCGGGTACGCAGCCCACCCCTGCTCCTGCC
CGACAGGCTCCGCCAGCGCCCCCTCCAGCCCCTCCCCAGGTTCGCAGCAGTGGGTTTGTCTGGCCGGTCTCCGGGCAAAT
CACCTCTGGCTTTGGCTACCGTCGCGGTCGCCTTCATGCAGGGGTAGATATTCCTGGCCCCGTGGGATCCCCCATTGTAG
CCGTTCAGGAGGGAGTGGTGATCTTCGCGGGGAATGCTGGGGATGGCTACGGCAATCGAGTGGACATTCGCCATCCCAAC
GGAATTGTTACTCGCTATGCCCACGGCCATCAGATTTATGTTTCCACGGGACAGTACGTGCAGCAGGGGCAGACAATCAT
GAGCCGCGGCAGCACTGGCTGGAGCACAGGGCCGCATCTGCACTTTGAAGTCCGCCCCGGCGGGGGCGCGCCTGTGGATC
CCCGGCCTTATCTGCCCTGA

Upstream 100 bases:

>100_bases
TTCTCTTGCACTCTAGTGTCAGCCTGTTGGTGTGAGGATGCCTTTAAAACCCACTTTCCCCAATCCCCAAAACGGGGAGC
TGGATTTCCGCGGTGCTGCC

Downstream 100 bases:

>100_bases
TCCTGTCTTGAACAGAGACCGTGCAGAACAGCCAGCCTGGCCATAAATTGCTAGCCTAAAAACAGCAAACTCCAGACCGT
AGGAACACGCCGATGCAGTG

Product: M23B family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MSTLSPPPPKGSAGIPSEQSWTSADSSAEEAYLLEWAPAPLSGRSKPRWVGLALSLSLTGLVWLLKLEADPCAEAGEEQL
PATPRCPTEPETAHPEPGDSAPARRGYPAWATGLLLMLGLAGVATLQQRQLNRPLSPAVEPIPPSVHTLSGALQQNYERK
KEQLRQAFAEGRIPTGEGPRGILEHEIQPGETLWQLTQMYQLDAAAITVSNGIQASTELKPGQVLLIPSQPGLIYTVKQG
DTLEDIANRYRVPQQRIIEATPLDRPEYLRIGQRLLIPGDVGELIQRQKEMIAAQKAREEEERRQQEEEAQRQAEAQARL
QAEQQRRAQQMEQERQALLAGGSLTHTVGASDTIERIAARYGVTQRSIIQANNLRNPHWLRIGQRLTIPAPGTQPTPAPA
RQAPPAPPPAPPQVRSSGFVWPVSGQITSGFGYRRGRLHAGVDIPGPVGSPIVAVQEGVVIFAGNAGDGYGNRVDIRHPN
GIVTRYAHGHQIYVSTGQYVQQGQTIMSRGSTGWSTGPHLHFEVRPGGGAPVDPRPYLP

Sequences:

>Translated_539_residues
MSTLSPPPPKGSAGIPSEQSWTSADSSAEEAYLLEWAPAPLSGRSKPRWVGLALSLSLTGLVWLLKLEADPCAEAGEEQL
PATPRCPTEPETAHPEPGDSAPARRGYPAWATGLLLMLGLAGVATLQQRQLNRPLSPAVEPIPPSVHTLSGALQQNYERK
KEQLRQAFAEGRIPTGEGPRGILEHEIQPGETLWQLTQMYQLDAAAITVSNGIQASTELKPGQVLLIPSQPGLIYTVKQG
DTLEDIANRYRVPQQRIIEATPLDRPEYLRIGQRLLIPGDVGELIQRQKEMIAAQKAREEEERRQQEEEAQRQAEAQARL
QAEQQRRAQQMEQERQALLAGGSLTHTVGASDTIERIAARYGVTQRSIIQANNLRNPHWLRIGQRLTIPAPGTQPTPAPA
RQAPPAPPPAPPQVRSSGFVWPVSGQITSGFGYRRGRLHAGVDIPGPVGSPIVAVQEGVVIFAGNAGDGYGNRVDIRHPN
GIVTRYAHGHQIYVSTGQYVQQGQTIMSRGSTGWSTGPHLHFEVRPGGGAPVDPRPYLP
>Mature_538_residues
STLSPPPPKGSAGIPSEQSWTSADSSAEEAYLLEWAPAPLSGRSKPRWVGLALSLSLTGLVWLLKLEADPCAEAGEEQLP
ATPRCPTEPETAHPEPGDSAPARRGYPAWATGLLLMLGLAGVATLQQRQLNRPLSPAVEPIPPSVHTLSGALQQNYERKK
EQLRQAFAEGRIPTGEGPRGILEHEIQPGETLWQLTQMYQLDAAAITVSNGIQASTELKPGQVLLIPSQPGLIYTVKQGD
TLEDIANRYRVPQQRIIEATPLDRPEYLRIGQRLLIPGDVGELIQRQKEMIAAQKAREEEERRQQEEEAQRQAEAQARLQ
AEQQRRAQQMEQERQALLAGGSLTHTVGASDTIERIAARYGVTQRSIIQANNLRNPHWLRIGQRLTIPAPGTQPTPAPAR
QAPPAPPPAPPQVRSSGFVWPVSGQITSGFGYRRGRLHAGVDIPGPVGSPIVAVQEGVVIFAGNAGDGYGNRVDIRHPNG
IVTRYAHGHQIYVSTGQYVQQGQTIMSRGSTGWSTGPHLHFEVRPGGGAPVDPRPYLP

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=205, Percent_Identity=30.7317073170732, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=42.0168067226891, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081989, Length=119, Percent_Identity=42.8571428571429, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 58517; Mature: 58386

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLSPPPPKGSAGIPSEQSWTSADSSAEEAYLLEWAPAPLSGRSKPRWVGLALSLSLTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEHHHHHC
LVWLLKLEADPCAEAGEEQLPATPRCPTEPETAHPEPGDSAPARRGYPAWATGLLLMLGL
EEEEEEECCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AGVATLQQRQLNRPLSPAVEPIPPSVHTLSGALQQNYERKKEQLRQAFAEGRIPTGEGPR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GILEHEIQPGETLWQLTQMYQLDAAAITVSNGIQASTELKPGQVLLIPSQPGLIYTVKQG
CHHHCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCC
DTLEDIANRYRVPQQRIIEATPLDRPEYLRIGQRLLIPGDVGELIQRQKEMIAAQKAREE
CCHHHHHHHHCCCHHHHHCCCCCCCHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
EERRQQEEEAQRQAEAQARLQAEQQRRAQQMEQERQALLAGGSLTHTVGASDTIERIAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
YGVTQRSIIQANNLRNPHWLRIGQRLTIPAPGTQPTPAPARQAPPAPPPAPPQVRSSGFV
HCCCHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
WPVSGQITSGFGYRRGRLHAGVDIPGPVGSPIVAVQEGVVIFAGNAGDGYGNRVDIRHPN
EECCCCEECCCCCCCCCEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEEEECCC
GIVTRYAHGHQIYVSTGQYVQQGQTIMSRGSTGWSTGPHLHFEVRPGGGAPVDPRPYLP
CCEEEEECCCEEEEECCHHHHHCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
STLSPPPPKGSAGIPSEQSWTSADSSAEEAYLLEWAPAPLSGRSKPRWVGLALSLSLTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEHHHHHC
LVWLLKLEADPCAEAGEEQLPATPRCPTEPETAHPEPGDSAPARRGYPAWATGLLLMLGL
EEEEEEECCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
AGVATLQQRQLNRPLSPAVEPIPPSVHTLSGALQQNYERKKEQLRQAFAEGRIPTGEGPR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GILEHEIQPGETLWQLTQMYQLDAAAITVSNGIQASTELKPGQVLLIPSQPGLIYTVKQG
CHHHCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCC
DTLEDIANRYRVPQQRIIEATPLDRPEYLRIGQRLLIPGDVGELIQRQKEMIAAQKAREE
CCHHHHHHHHCCCHHHHHCCCCCCCHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
EERRQQEEEAQRQAEAQARLQAEQQRRAQQMEQERQALLAGGSLTHTVGASDTIERIAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHH
YGVTQRSIIQANNLRNPHWLRIGQRLTIPAPGTQPTPAPARQAPPAPPPAPPQVRSSGFV
HCCCHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
WPVSGQITSGFGYRRGRLHAGVDIPGPVGSPIVAVQEGVVIFAGNAGDGYGNRVDIRHPN
EECCCCEECCCCCCCCCEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEEEECCC
GIVTRYAHGHQIYVSTGQYVQQGQTIMSRGSTGWSTGPHLHFEVRPGGGAPVDPRPYLP
CCEEEEECCCEEEEECCHHHHHCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]