| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is kch [C]
Identifier: 86609264
GI number: 86609264
Start: 1890422
End: 1891471
Strand: Direct
Name: kch [C]
Synonym: CYB_1806
Alternate gene names: 86609264
Gene position: 1890422-1891471 (Clockwise)
Preceding gene: 86609262
Following gene: 86609271
Centisome position: 62.05
GC content: 59.71
Gene sequence:
>1050_bases ATGGCTTCTGCTCGTCCCCCCTTCCAGGCTGCCAAAAGGGATCCCGGGATCCGGCGAGACCTCGGCTTGGGTGTGGGGGC ATTGGTGTGTGTGGTGCTGATCGGCACCCTCTGGTACCACGGGGTGGAGCAGTGGCCTTGGGTGGAAGCTTTTTACATGA CCGTTATCACCCTAACCACCGTGGGCTTCATGGAGGTGGGGCCGCTGGGGGAGCGGGGGCGTTTATTTACGGTGGCCTTG ATCCTGATGGGGGTCTTGAGCATTGGGTTCATGGTGAATCGCTTTACAGAGGCCCTCATCCAGGGACATTTTCAGGAAGG GATCCGGCAACGGAAATGGAAGAAACAGATGGAAGCGCTGAACAACCACTACATCATTTGCGGTTTCGGGCGCATTGGGC GGCAGGTGGCTCAAGAGTTTCGAGCAGAAGGGGTGCCATTTTTGGTGATCGATCAGTCTGCTGAGGCGATTCAGGTGGCT CAAGAGCTGGGATATGTGGCTCTCCAGGGGGATAGTACTCTGGATGCCACTTTGCTCGAAGCGCGGGTGCAACAGGCGGA GGGGCTGATTGCCGCCCTGTCTTCCGATGCCGAGAACCTCTACGTGGTCTTGTCGGCCCGCACCTTGAACCCCCGCATTC GCACCATTGCCCGCGCCAATACGGAGGAGGCTTTGCAAAAACTGCAGCGGGCGGGCGTTGCCCATGCCATTTCTCCTTAC ATCACGGGCGGAAAACGCATGGCGGCGGCTGCCCTGCGTCCTCGGGTTGTGGACTTTGTGGATGGCATCCTTGCCGGTCG GGATCGCACTTTCTACCTGGAGGAGTACGAGCTGGCAGCCCAAGAATGTCCTTATGTCGGGCAAACCCTACGGAAAGCCG ATTTGCGCAACCGATCCGGAGCTTTAGTGGTGGCAATCCGGCGGGCCGATGGCCAGTTGATCGGTGGCCCCAGCGGAGAA ACCCTGTTGCAGCCGGGGGATCTGCTGCTGTGTATGGGCACTGCAGAGCAGTTGCGCCGGCTTGGTCAGCTGCTCTATCC ACGCCCGTAG
Upstream 100 bases:
>100_bases GTATTCAGGCATCCGCACTCCACTTGTTACCGAACAACAACGGGTTCTTCCCCATTCTAGTTCTTGCTTCCTTTTCCTGG GCTAGATCTGGCTGGGCTCT
Downstream 100 bases:
>100_bases CAGCCCGTTCTCCACCTGGGTAGCCTGGCTCAAATCCGCCTCAGAATACTGGGGCCATGAGAGTCGGTGCCACAGGTTTT CAAAAGTCCGTAGGTCTCGG
Product: VIC family potassium channel protein
Products: K (I) [Cytoplasm] [C]
Alternate protein names: MjK1 [H]
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MASARPPFQAAKRDPGIRRDLGLGVGALVCVVLIGTLWYHGVEQWPWVEAFYMTVITLTTVGFMEVGPLGERGRLFTVAL ILMGVLSIGFMVNRFTEALIQGHFQEGIRQRKWKKQMEALNNHYIICGFGRIGRQVAQEFRAEGVPFLVIDQSAEAIQVA QELGYVALQGDSTLDATLLEARVQQAEGLIAALSSDAENLYVVLSARTLNPRIRTIARANTEEALQKLQRAGVAHAISPY ITGGKRMAAAALRPRVVDFVDGILAGRDRTFYLEEYELAAQECPYVGQTLRKADLRNRSGALVVAIRRADGQLIGGPSGE TLLQPGDLLLCMGTAEQLRRLGQLLYPRP
Sequences:
>Translated_349_residues MASARPPFQAAKRDPGIRRDLGLGVGALVCVVLIGTLWYHGVEQWPWVEAFYMTVITLTTVGFMEVGPLGERGRLFTVAL ILMGVLSIGFMVNRFTEALIQGHFQEGIRQRKWKKQMEALNNHYIICGFGRIGRQVAQEFRAEGVPFLVIDQSAEAIQVA QELGYVALQGDSTLDATLLEARVQQAEGLIAALSSDAENLYVVLSARTLNPRIRTIARANTEEALQKLQRAGVAHAISPY ITGGKRMAAAALRPRVVDFVDGILAGRDRTFYLEEYELAAQECPYVGQTLRKADLRNRSGALVVAIRRADGQLIGGPSGE TLLQPGDLLLCMGTAEQLRRLGQLLYPRP >Mature_348_residues ASARPPFQAAKRDPGIRRDLGLGVGALVCVVLIGTLWYHGVEQWPWVEAFYMTVITLTTVGFMEVGPLGERGRLFTVALI LMGVLSIGFMVNRFTEALIQGHFQEGIRQRKWKKQMEALNNHYIICGFGRIGRQVAQEFRAEGVPFLVIDQSAEAIQVAQ ELGYVALQGDSTLDATLLEARVQQAEGLIAALSSDAENLYVVLSARTLNPRIRTIARANTEEALQKLQRAGVAHAISPYI TGGKRMAAAALRPRVVDFVDGILAGRDRTFYLEEYELAAQECPYVGQTLRKADLRNRSGALVVAIRRADGQLIGGPSGET LLQPGDLLLCMGTAEQLRRLGQLLYPRP
Specific function: Potassium channel protein. Seems to conduct potassium at low membrane potentials [H]
COG id: COG1226
COG function: function code P; Kef-type K+ transport systems, predicted NAD-binding component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787503, Length=205, Percent_Identity=25.8536585365854, Blast_Score=84, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013099 - InterPro: IPR003280 - InterPro: IPR016040 - InterPro: IPR006037 - InterPro: IPR003148 [H]
Pfam domain/function: PF07885 Ion_trans_2; PF02080 TrkA_C; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 38345; Mature: 38214
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASARPPFQAAKRDPGIRRDLGLGVGALVCVVLIGTLWYHGVEQWPWVEAFYMTVITLTT CCCCCCCHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VGFMEVGPLGERGRLFTVALILMGVLSIGFMVNRFTEALIQGHFQEGIRQRKWKKQMEAL HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNHYIICGFGRIGRQVAQEFRAEGVPFLVIDQSAEAIQVAQELGYVALQGDSTLDATLLE CCCEEEEECHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCEEEEECCCCHHHHHHH ARVQQAEGLIAALSSDAENLYVVLSARTLNPRIRTIARANTEEALQKLQRAGVAHAISPY HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHCHH ITGGKRMAAAALRPRVVDFVDGILAGRDRTFYLEEYELAAQECPYVGQTLRKADLRNRSG HCCCHHHHHHHHCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCC ALVVAIRRADGQLIGGPSGETLLQPGDLLLCMGTAEQLRRLGQLLYPRP CEEEEEEECCCCEECCCCCCCEECCCCEEEEECCHHHHHHHHHHHCCCC >Mature Secondary Structure ASARPPFQAAKRDPGIRRDLGLGVGALVCVVLIGTLWYHGVEQWPWVEAFYMTVITLTT CCCCCCHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH VGFMEVGPLGERGRLFTVALILMGVLSIGFMVNRFTEALIQGHFQEGIRQRKWKKQMEAL HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNHYIICGFGRIGRQVAQEFRAEGVPFLVIDQSAEAIQVAQELGYVALQGDSTLDATLLE CCCEEEEECHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCEEEEECCCCHHHHHHH ARVQQAEGLIAALSSDAENLYVVLSARTLNPRIRTIARANTEEALQKLQRAGVAHAISPY HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHCHH ITGGKRMAAAALRPRVVDFVDGILAGRDRTFYLEEYELAAQECPYVGQTLRKADLRNRSG HCCCHHHHHHHHCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHCCCCC ALVVAIRRADGQLIGGPSGETLLQPGDLLLCMGTAEQLRRLGQLLYPRP CEEEEEEECCCCEECCCCCCCEECCCCEEEEECCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: K (I) [Periplasm] [C]
Specific reaction: K (I) [Periplasm] = K (I) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]