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The map label for this gene is rpoA

Identifier: 86609045

GI number: 86609045

Start: 1652911

End: 1653918

Strand: Direct

Name: rpoA

Synonym: CYB_1580

Alternate gene names: 86609045

Gene position: 1652911-1653918 (Clockwise)

Preceding gene: 86609044

Following gene: 86609046

Centisome position: 54.25

GC content: 58.43

Gene sequence:

>1008_bases
ATGACGATTCAAACCAGCCGAACCCTCTCCCACTCTCTGGGCAGCAGAGCGAGCTCAAGCGCTGTTGCTTACCAGACCGA
GTGTGTTGAATCTCATCGGGATGATAACGGCGTTCACTACGGCAAATTTGCTCTGGGGCCACTGGAGCGCGGCCAAGGGA
TCACGGTGGGCAACGCTTTGCGGCGGGTGTTGCTCTCCAATCTGGAGGGGACGGCGGTGACTGCTGTACGCATTGCCGGG
GTGACCCACGAGTTTTCCACGGTGCCGGGGGTGCGGGAAGACGTGATGGAGATCCTTCTAAACATGAAGGAGCTGGTGCT
GCGCTCCAGTTCCCCCGAGACTCAGGTGGGCCGCTTGGTGGCTCAGGGGCCAGGGGAAGTTACTGCTGAGAAGCTGCAAT
TGCCCAGCGATGTGGAGGTGATCAACCCCCGTCACCACATTGCCACCCTGGCGGAAGGGGCGATTTTGGAAATGGAGTTC
ATGATTGGCCGGGGACATGGCTACCGCGCCGTCGATTACTCCGACAGCAAAGCGATGGCGATTGATTTTCTGCAGATCGA
CTCTGTCTTCATGCCGGTGCGCAAGGTGAACTACGCTGTGGAAGCAGCTCGGGTGGGCCAATTCCTGGAAAAAGATCGGC
TAGTATTGGAAATCTGGACCAACGGCAGCCTCACCCCGCAAGAGGCCCTCAGCCAAGCGGCCCGCATTTTGGTGGGCTTG
TTCGCACCGCTGCAGGAGGTCAGCTTCGATGCTCCTGTGCCGCCCAAGCCAGACGAGGACAACCAAAAAAACCAGATCCC
CATCGAGGAGCTACAGCTCTCGGTACGGGCCTACAACTGTCTGAAGCGAGCTCAGATCAACACGGTGGCCGATCTGCTGC
TCTATACCGAGGAAGATCTGCTGGAGATCAAAAACTTTGGCCAGAAGTCTGCCGAAGAGGTGGTGCAGGCTTTGAAAGCC
CGCTTTGGTCTGACACTGCCCCGCACCCGCGAAAAAGGCAAGGCCTAG

Upstream 100 bases:

>100_bases
AGCTACGCCATGCCTCAGCGAAGGTCTGCCCAAGCGTGAGATGACCTCGAAGTTTCATCAGTTCTCCAAACGGATATCGA
GCCAGACGGACGGGGCCACC

Downstream 100 bases:

>100_bases
AGTTTAGGTTCCGTCTCAAGCATCTGCACCGCTAGCACAACCGCGTCAAAACGCAAGGATCCCCGAAGAGTGTAGGACAC
AAGACAGAGGTTACCATGCG

Product: DNA-directed RNA polymerase subunit alpha

Products: NA

Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MTIQTSRTLSHSLGSRASSSAVAYQTECVESHRDDNGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAG
VTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHIATLAEGAILEMEF
MIGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGL
FAPLQEVSFDAPVPPKPDEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLLYTEEDLLEIKNFGQKSAEEVVQALKA
RFGLTLPRTREKGKA

Sequences:

>Translated_335_residues
MTIQTSRTLSHSLGSRASSSAVAYQTECVESHRDDNGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAG
VTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHIATLAEGAILEMEF
MIGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGL
FAPLQEVSFDAPVPPKPDEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLLYTEEDLLEIKNFGQKSAEEVVQALKA
RFGLTLPRTREKGKA
>Mature_334_residues
TIQTSRTLSHSLGSRASSSAVAYQTECVESHRDDNGVHYGKFALGPLERGQGITVGNALRRVLLSNLEGTAVTAVRIAGV
THEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLVAQGPGEVTAEKLQLPSDVEVINPRHHIATLAEGAILEMEFM
IGRGHGYRAVDYSDSKAMAIDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGLF
APLQEVSFDAPVPPKPDEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLLYTEEDLLEIKNFGQKSAEEVVQALKAR
FGLTLPRTREKGKA

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase alpha chain family

Homologues:

Organism=Escherichia coli, GI1789690, Length=294, Percent_Identity=41.4965986394558, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): RPOA_SYNJB (Q2JL74)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_477807.1
- HSSP:   P20429
- ProteinModelPortal:   Q2JL74
- STRING:   Q2JL74
- GeneID:   3901700
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_1580
- TIGR:   CYB_1580
- eggNOG:   COG0202
- HOGENOM:   HBG430844
- OMA:   FGTTLGN
- ProtClustDB:   PRK05182
- BioCyc:   SSP321332:CYB_1580-MONOMER
- HAMAP:   MF_00059
- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR003583
- InterPro:   IPR011260
- InterPro:   IPR011773
- Gene3D:   G3DSA:2.170.120.12
- ProDom:   PD001179
- SMART:   SM00278
- SMART:   SM00662
- TIGRFAMs:   TIGR02027

Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L; SSF47789 RNAP_alpha_C; SSF56553 RNAP_insert; SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 36816; Mature: 36684

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQTSRTLSHSLGSRASSSAVAYQTECVESHRDDNGVHYGKFALGPLERGQGITVGNAL
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEECCEECCCCCCCCCCCHHHHH
RRVLLSNLEGTAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLV
HHHHHHCCCCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AQGPGEVTAEKLQLPSDVEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMA
HCCCCCCCHHHHCCCCCCEEECCHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCEEE
IDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGL
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
FAPLQEVSFDAPVPPKPDEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLLYTEEDL
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
LEIKNFGQKSAEEVVQALKARFGLTLPRTREKGKA
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TIQTSRTLSHSLGSRASSSAVAYQTECVESHRDDNGVHYGKFALGPLERGQGITVGNAL
CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEECCEECCCCCCCCCCCHHHHH
RRVLLSNLEGTAVTAVRIAGVTHEFSTVPGVREDVMEILLNMKELVLRSSSPETQVGRLV
HHHHHHCCCCCEEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AQGPGEVTAEKLQLPSDVEVINPRHHIATLAEGAILEMEFMIGRGHGYRAVDYSDSKAMA
HCCCCCCCHHHHCCCCCCEEECCHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCEEE
IDFLQIDSVFMPVRKVNYAVEAARVGQFLEKDRLVLEIWTNGSLTPQEALSQAARILVGL
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
FAPLQEVSFDAPVPPKPDEDNQKNQIPIEELQLSVRAYNCLKRAQINTVADLLLYTEEDL
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
LEIKNFGQKSAEEVVQALKARFGLTLPRTREKGKA
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA