| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609019
Identifier: 86609019
GI number: 86609019
Start: 1627639
End: 1628709
Strand: Reverse
Name: 86609019
Synonym: CYB_1553
Alternate gene names: NA
Gene position: 1628709-1627639 (Counterclockwise)
Preceding gene: 86609021
Following gene: 86609017
Centisome position: 53.46
GC content: 62.18
Gene sequence:
>1071_bases TTGGGCATAGATCCGACGCAGAGAACTTCCGGCTTTCATTATGCTGCAGACGGGATAGCCGTATTCCAGACTTGTTGGCG ATGGTCATCGAGAATAGGCAAGGCATCAACTCAAAACCTGGGCAAACCGCCCCGGCGACAGAGCAGGGATCCATTCATCC GCCTGTCCATAGGCTTGTTGGGCGAAGCGACGGGCCAAAGCGGGCACGATGGGCAGGGGGTTGCTGAAGCCGGAAAACAG TTGCAAGCCTTCCCAGCCGGGCAGGGATCCCACCAGAGGCTGGTGATCAGCGCTGAAGGCCACCAAGCAGTGATACCACC GTCCGGGCAGGTGGGCCAACTTGGGCAGGTAGCGACCGGCTTGTGCCCGGATCTGGGCTTCGCTGGCGGCTGCATCCACC TCGGCATGGGGATCCGTCAATACCCGGCTGATCTGGCCCATGCGAATGCTGCCATCTACAAATTGCAGGATCCCGGCATC CAGAATCGGCGGGCAAAGCTCGTGCCCTGGCTCGTCCCAAAGGGGATCCCGATCGGGATGGGCGGCTTGTCGTTCCAGTT CCAAGCGTTGCACGGGCACGCTCATCACCAACGCTTTCAATTGCAAATCCGAGGGCTCCAGCTCCAGGGATTCGGCATGG GTGTAGTAGATGGGCACCCGGATTCCCGCTTGGCGCAACAGAGCCCGTGTCCAGCCGCCGGCGCACACCACCACCTGGCC TGCTCCGTAGCAGTCGGCTCCGGACTCTACGCCCGTGATGCGCGCTCCCTGCCGCCGCAGGGCCGTTGCTGTTGCGATCA AGAGGGATCCCCCCAATCGTTGCAAGGCTGTTTGAAAGGCCAGCGCCGTCAACAAGGGGTTGATGTGGCCATGCCGAGCC CAGAGGACTACTTCCAGAGCGGCCGGATCCAGCAGCGGCTCCAGCTCGCAGGCTGCCGCCACCGAAATCCGCCGGGGTGG GATGCGACAGTCGGCCAGATCCGCCTCAACGGCCTCTGCATCGTAGCCGGGGGCAATGGGCATGAGCAGATCCAGCTCGC GAAATTGAATATCTGCCTCCAGCTCTTCTGA
Upstream 100 bases:
>100_bases CAGCACCTGCAACTGTTGCAGCACATGTTTGCCCAAAAAGCCGCTGCCCCCTGTGAGCAAAATGCGCTTCTGGCTGAGAT CGACGGAGCTGGGCAAGCTG
Downstream 100 bases:
>100_bases CAGGGTGCGGTAGCGTTGGATCCCTTCTTCCCCCAGAGCTTTGAGCAGCGGCGTTTTGCCCGCCCAATGGGCCAAGCCCC CGTAGCTGTAGCGGGTTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 356; Mature: 355
Protein sequence:
>356_residues MGIDPTQRTSGFHYAADGIAVFQTCWRWSSRIGKASTQNLGKPPRRQSRDPFIRLSIGLLGEATGQSGHDGQGVAEAGKQ LQAFPAGQGSHQRLVISAEGHQAVIPPSGQVGQLGQVATGLCPDLGFAGGCIHLGMGIRQYPADLAHANAAIYKLQDPGI QNRRAKLVPWLVPKGIPIGMGGLSFQFQALHGHAHHQRFQLQIRGLQLQGFGMGVVDGHPDSRLAQQSPCPAAGAHHHLA CSVAVGSGLYARDARSLPPQGRCCCDQEGSPQSLQGCLKGQRRQQGVDVAMPSPEDYFQSGRIQQRLQLAGCRHRNPPGW DATVGQIRLNGLCIVAGGNGHEQIQLAKLNICLQLF
Sequences:
>Translated_356_residues MGIDPTQRTSGFHYAADGIAVFQTCWRWSSRIGKASTQNLGKPPRRQSRDPFIRLSIGLLGEATGQSGHDGQGVAEAGKQ LQAFPAGQGSHQRLVISAEGHQAVIPPSGQVGQLGQVATGLCPDLGFAGGCIHLGMGIRQYPADLAHANAAIYKLQDPGI QNRRAKLVPWLVPKGIPIGMGGLSFQFQALHGHAHHQRFQLQIRGLQLQGFGMGVVDGHPDSRLAQQSPCPAAGAHHHLA CSVAVGSGLYARDARSLPPQGRCCCDQEGSPQSLQGCLKGQRRQQGVDVAMPSPEDYFQSGRIQQRLQLAGCRHRNPPGW DATVGQIRLNGLCIVAGGNGHEQIQLAKLNICLQLF >Mature_355_residues GIDPTQRTSGFHYAADGIAVFQTCWRWSSRIGKASTQNLGKPPRRQSRDPFIRLSIGLLGEATGQSGHDGQGVAEAGKQL QAFPAGQGSHQRLVISAEGHQAVIPPSGQVGQLGQVATGLCPDLGFAGGCIHLGMGIRQYPADLAHANAAIYKLQDPGIQ NRRAKLVPWLVPKGIPIGMGGLSFQFQALHGHAHHQRFQLQIRGLQLQGFGMGVVDGHPDSRLAQQSPCPAAGAHHHLAC SVAVGSGLYARDARSLPPQGRCCCDQEGSPQSLQGCLKGQRRQQGVDVAMPSPEDYFQSGRIQQRLQLAGCRHRNPPGWD ATVGQIRLNGLCIVAGGNGHEQIQLAKLNICLQLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37978; Mature: 37847
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIDPTQRTSGFHYAADGIAVFQTCWRWSSRIGKASTQNLGKPPRRQSRDPFIRLSIGLL CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEEEEE GEATGQSGHDGQGVAEAGKQLQAFPAGQGSHQRLVISAEGHQAVIPPSGQVGQLGQVATG ECCCCCCCCCCCCHHHHHHHEEECCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHH LCPDLGFAGGCIHLGMGIRQYPADLAHANAAIYKLQDPGIQNRRAKLVPWLVPKGIPIGM CCCCCCCCCCHHHHCCCHHHCCHHHHHCCEEEEEECCCCCCCCCCEECEEECCCCCEECC GGLSFQFQALHGHAHHQRFQLQIRGLQLQGFGMGVVDGHPDSRLAQQSPCPAAGAHHHLA CCCCEEEEEECCCCCCEEEEEEEEEEEEECCEEEEECCCCCHHHHHCCCCCCCCCCCEEE CSVAVGSGLYARDARSLPPQGRCCCDQEGSPQSLQGCLKGQRRQQGVDVAMPSPEDYFQS EEEEECCCEEECCCCCCCCCCCEECCCCCCHHHHHHHHCCHHHHCCCCEECCCCHHHHHC GRIQQRLQLAGCRHRNPPGWDATVGQIRLNGLCIVAGGNGHEQIQLAKLNICLQLF CHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEC >Mature Secondary Structure GIDPTQRTSGFHYAADGIAVFQTCWRWSSRIGKASTQNLGKPPRRQSRDPFIRLSIGLL CCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEEEEE GEATGQSGHDGQGVAEAGKQLQAFPAGQGSHQRLVISAEGHQAVIPPSGQVGQLGQVATG ECCCCCCCCCCCCHHHHHHHEEECCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHH LCPDLGFAGGCIHLGMGIRQYPADLAHANAAIYKLQDPGIQNRRAKLVPWLVPKGIPIGM CCCCCCCCCCHHHHCCCHHHCCHHHHHCCEEEEEECCCCCCCCCCEECEEECCCCCEECC GGLSFQFQALHGHAHHQRFQLQIRGLQLQGFGMGVVDGHPDSRLAQQSPCPAAGAHHHLA CCCCEEEEEECCCCCCEEEEEEEEEEEEECCEEEEECCCCCHHHHHCCCCCCCCCCCEEE CSVAVGSGLYARDARSLPPQGRCCCDQEGSPQSLQGCLKGQRRQQGVDVAMPSPEDYFQS EEEEECCCEEECCCCCCCCCCCEECCCCCCHHHHHHHHCCHHHHCCCCEECCCCHHHHHC GRIQQRLQLAGCRHRNPPGWDATVGQIRLNGLCIVAGGNGHEQIQLAKLNICLQLF CHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCEEEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA