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The map label for this gene is ycnJ [H]

Identifier: 86608983

GI number: 86608983

Start: 1592885

End: 1594510

Strand: Reverse

Name: ycnJ [H]

Synonym: CYB_1516

Alternate gene names: 86608983

Gene position: 1594510-1592885 (Counterclockwise)

Preceding gene: 86608984

Following gene: 86608982

Centisome position: 52.34

GC content: 62.3

Gene sequence:

>1626_bases
ATGTTTCATCCCAAAAGGGGTTTTGCTTGGATTTGGTCTGGGATCCTCTGCGCCTTGCTGTGGGTGGCCGGGATCCCGCC
CGCTTTTGCCCATGCCAGCTTGCTCTCCACCTTCCCAGAGGATGGGGCGGTGCTGCAGGAAGCTCCGGCCCAGGTGCGGC
TTGTTTTCAATGAGCCGGTGCAGATCACACAGCTCCAGGTTTTAGACAGCAACGGACGAGCTCTGCCCTTAGAAAATCGG
GTGACCAGGGGTGAGGCACCGCAGGGGGATTTGCCGCAGGGGATCCCCGAGGGAGTTTACATCGTCAGTTGGCGGGCCAT
TTCTGCCGATTCCCATCCGGTGAGTGGATCGTTTGCCTTCCAGGTGGGGGCAGCCGATCCTGGGCAATTGCAGGCGGCGA
GGACAGCTCACGCCCAAGGAAGGGATCCCTTGTACTGGCCGCTGGTGGGGGTACGCTGGGGGATCTACTTGGGCAGCCTC
TTTGTGGTGGGGGTGCTGGGCTGGTGGCGACTGTTGCGGGGGCAGCGGAGCAGTTTCGCCGATTCTGATCGCGTCAGCGG
GGCGGAGCCCTTATCTTGGGCTTTTGCGACAGCTTGGATCACCCTCAGTTTGACCGCGGTGGCCTTCAGTCTGCATTTGG
CCCAGCTTTACCCCCACTTCAATGGGCGAGAGCTGCTGCGTGTGATGCTTTCTCCCTACGGTTGGGGTACAGGGCTGCGG
CTGGTGGGGCTAGGGATCCTGATCTGGGCCTGTGAGGGAGGTGCCGTCTGGGCCAGCGGTATGGGGTCGGTGTTGGTGCT
CGGCTCCTTTTTGCCCATTGGCCATGCTCTCACCAGTGAGCATCCGATGGGGACAATGGCGCTGCTGGGGCTGCATCTGG
CCGGTTCAGCTTTCTGGTTGGGAGGGTTGTGGGGGCTGGAGCGCCTGCTGGGCAAGGAATCTGCTCCCTACCCATCTGTA
GGCATCATCCAACGGTTTTCTGACGTGGCCACCTGGGCGGTACCGGGGCTTATCCTGGCGGGGGTGGGGATGGGTGGGAT
CCACCGCGGCTGGCACTGGGATCATCCCTACGGCCAGTATCTCTGGGCCAAGCTGCTGCTGGTGCTGATGATGGTGGGGC
TGGGCGCCCACAACAAGTTTCGGCTGGTGCCGGGATTACAGCAAGGTGGACAGGCCGCGGGCCGGTCGCTGCGCCGGATC
GTCCGCCTGGAGTTGGTGGGGCTGATTCTGGTGCTGGGCTTGACCAGCTTCCTGGTGGCCCAGGCTCCCCCCAGTCATGG
GAGGCAGGGCATGGGAGCCCCACTGGAGTCGGGCTTGCAGACCAGTTGTGAAGAGCGCTTGAACTGGCCGGAAGGCAGCC
TGCACCTGAGGATTCTGCCCTGTCGTCCTGGGGAAAATCAAATTCGGGCTGAGGTGAAGGGAGTCCCGGCCCAGGAATTG
ACCCTTGGGTTTTCCCTGCCGGAACACGGGATCCCCCCTCTACGCCGTACTGTAGCGCCGGATAGGCCTGGCCAATTTGT
GGTGGAAAATGTGCCTCTGGCCCTGGCGGGGGAATGGCAGATCGAGGTGAGACTGCTGATCAGCGATTTTGAAGAGCGGC
GAGGTCAGATCGCGGTTTCTCTCTGA

Upstream 100 bases:

>100_bases
CGCTGCTGAAGCTGACAGGTGGAGACAGTGGACATGGGCAAGGCCACGGGCATGGACATGGGCATGGTCACGGTACCCGC
TAAGCGGTCTGCTTAGGAGC

Downstream 100 bases:

>100_bases
CTGAATTGTTACAGACATTGAAGATCGCGAAAAGAAAAAGCAGAAAAAGACCCTGGATAGGAGCTGTGGGTTGCTCCGCC
CAAGGGCGTCGGCCTGTGGC

Product: copper resistance protein CopC/D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MFHPKRGFAWIWSGILCALLWVAGIPPAFAHASLLSTFPEDGAVLQEAPAQVRLVFNEPVQITQLQVLDSNGRALPLENR
VTRGEAPQGDLPQGIPEGVYIVSWRAISADSHPVSGSFAFQVGAADPGQLQAARTAHAQGRDPLYWPLVGVRWGIYLGSL
FVVGVLGWWRLLRGQRSSFADSDRVSGAEPLSWAFATAWITLSLTAVAFSLHLAQLYPHFNGRELLRVMLSPYGWGTGLR
LVGLGILIWACEGGAVWASGMGSVLVLGSFLPIGHALTSEHPMGTMALLGLHLAGSAFWLGGLWGLERLLGKESAPYPSV
GIIQRFSDVATWAVPGLILAGVGMGGIHRGWHWDHPYGQYLWAKLLLVLMMVGLGAHNKFRLVPGLQQGGQAAGRSLRRI
VRLELVGLILVLGLTSFLVAQAPPSHGRQGMGAPLESGLQTSCEERLNWPEGSLHLRILPCRPGENQIRAEVKGVPAQEL
TLGFSLPEHGIPPLRRTVAPDRPGQFVVENVPLALAGEWQIEVRLLISDFEERRGQIAVSL

Sequences:

>Translated_541_residues
MFHPKRGFAWIWSGILCALLWVAGIPPAFAHASLLSTFPEDGAVLQEAPAQVRLVFNEPVQITQLQVLDSNGRALPLENR
VTRGEAPQGDLPQGIPEGVYIVSWRAISADSHPVSGSFAFQVGAADPGQLQAARTAHAQGRDPLYWPLVGVRWGIYLGSL
FVVGVLGWWRLLRGQRSSFADSDRVSGAEPLSWAFATAWITLSLTAVAFSLHLAQLYPHFNGRELLRVMLSPYGWGTGLR
LVGLGILIWACEGGAVWASGMGSVLVLGSFLPIGHALTSEHPMGTMALLGLHLAGSAFWLGGLWGLERLLGKESAPYPSV
GIIQRFSDVATWAVPGLILAGVGMGGIHRGWHWDHPYGQYLWAKLLLVLMMVGLGAHNKFRLVPGLQQGGQAAGRSLRRI
VRLELVGLILVLGLTSFLVAQAPPSHGRQGMGAPLESGLQTSCEERLNWPEGSLHLRILPCRPGENQIRAEVKGVPAQEL
TLGFSLPEHGIPPLRRTVAPDRPGQFVVENVPLALAGEWQIEVRLLISDFEERRGQIAVSL
>Mature_541_residues
MFHPKRGFAWIWSGILCALLWVAGIPPAFAHASLLSTFPEDGAVLQEAPAQVRLVFNEPVQITQLQVLDSNGRALPLENR
VTRGEAPQGDLPQGIPEGVYIVSWRAISADSHPVSGSFAFQVGAADPGQLQAARTAHAQGRDPLYWPLVGVRWGIYLGSL
FVVGVLGWWRLLRGQRSSFADSDRVSGAEPLSWAFATAWITLSLTAVAFSLHLAQLYPHFNGRELLRVMLSPYGWGTGLR
LVGLGILIWACEGGAVWASGMGSVLVLGSFLPIGHALTSEHPMGTMALLGLHLAGSAFWLGGLWGLERLLGKESAPYPSV
GIIQRFSDVATWAVPGLILAGVGMGGIHRGWHWDHPYGQYLWAKLLLVLMMVGLGAHNKFRLVPGLQQGGQAAGRSLRRI
VRLELVGLILVLGLTSFLVAQAPPSHGRQGMGAPLESGLQTSCEERLNWPEGSLHLRILPCRPGENQIRAEVKGVPAQEL
TLGFSLPEHGIPPLRRTVAPDRPGQFVVENVPLALAGEWQIEVRLLISDFEERRGQIAVSL

Specific function: Involved in uptake of extracellular oxidized copper under copper-limiting conditions [H]

COG id: COG2372

COG function: function code R; Uncharacterized protein, homolog of Cu resistance protein CopC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the CopD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007348
- InterPro:   IPR008457
- InterPro:   IPR014755
- InterPro:   IPR014756 [H]

Pfam domain/function: PF04234 CopC; PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 58551; Mature: 58551

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHPKRGFAWIWSGILCALLWVAGIPPAFAHASLLSTFPEDGAVLQEAPAQVRLVFNEPV
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCEEEEEECCCC
QITQLQVLDSNGRALPLENRVTRGEAPQGDLPQGIPEGVYIVSWRAISADSHPVSGSFAF
EEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
QVGAADPGQLQAARTAHAQGRDPLYWPLVGVRWGIYLGSLFVVGVLGWWRLLRGQRSSFA
EECCCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DSDRVSGAEPLSWAFATAWITLSLTAVAFSLHLAQLYPHFNGRELLRVMLSPYGWGTGLR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHH
LVGLGILIWACEGGAVWASGMGSVLVLGSFLPIGHALTSEHPMGTMALLGLHLAGSAFWL
HHHEEEEEEEECCCCEECCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHCCCHHHH
GGLWGLERLLGKESAPYPSVGIIQRFSDVATWAVPGLILAGVGMGGIHRGWHWDHPYGQY
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
LWAKLLLVLMMVGLGAHNKFRLVPGLQQGGQAAGRSLRRIVRLELVGLILVLGLTSFLVA
HHHHHHHHHHHHCCCCCCCEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAPPSHGRQGMGAPLESGLQTSCEERLNWPEGSLHLRILPCRPGENQIRAEVKGVPAQEL
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCCHHHE
TLGFSLPEHGIPPLRRTVAPDRPGQFVVENVPLALAGEWQIEVRLLISDFEERRGQIAVS
EEECCCCCCCCCHHHHHCCCCCCCCEEEECCCEEEECCEEEEEEEEEHHHHHCCCCEEEE
L
C
>Mature Secondary Structure
MFHPKRGFAWIWSGILCALLWVAGIPPAFAHASLLSTFPEDGAVLQEAPAQVRLVFNEPV
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHCCCCEEEEEECCCC
QITQLQVLDSNGRALPLENRVTRGEAPQGDLPQGIPEGVYIVSWRAISADSHPVSGSFAF
EEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
QVGAADPGQLQAARTAHAQGRDPLYWPLVGVRWGIYLGSLFVVGVLGWWRLLRGQRSSFA
EECCCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DSDRVSGAEPLSWAFATAWITLSLTAVAFSLHLAQLYPHFNGRELLRVMLSPYGWGTGLR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHH
LVGLGILIWACEGGAVWASGMGSVLVLGSFLPIGHALTSEHPMGTMALLGLHLAGSAFWL
HHHEEEEEEEECCCCEECCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHCCCHHHH
GGLWGLERLLGKESAPYPSVGIIQRFSDVATWAVPGLILAGVGMGGIHRGWHWDHPYGQY
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
LWAKLLLVLMMVGLGAHNKFRLVPGLQQGGQAAGRSLRRIVRLELVGLILVLGLTSFLVA
HHHHHHHHHHHHCCCCCCCEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAPPSHGRQGMGAPLESGLQTSCEERLNWPEGSLHLRILPCRPGENQIRAEVKGVPAQEL
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHCCCCHHHE
TLGFSLPEHGIPPLRRTVAPDRPGQFVVENVPLALAGEWQIEVRLLISDFEERRGQIAVS
EEECCCCCCCCCHHHHHCCCCCCCCEEEECCCEEEECCEEEEEEEEEHHHHHCCCCEEEE
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]