| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608941
Identifier: 86608941
GI number: 86608941
Start: 1550153
End: 1550629
Strand: Reverse
Name: 86608941
Synonym: CYB_1474
Alternate gene names: NA
Gene position: 1550629-1550153 (Counterclockwise)
Preceding gene: 86608942
Following gene: 86608940
Centisome position: 50.9
GC content: 52.41
Gene sequence:
>477_bases ATGCGGTTTCTCAAGTGGCTGTTGCACAATCCCCACGAGACAGAAGAGGAGGATCCCTTTTTGCGGGCCATCACCCGCCT GGAAAGCCTGATCTCGAAGCTGCTTTCAATTTTGATGATCGGGCTAATCGTAGTAGCAGTGGTGGACTTGGCCCGGTTCT TGGTGGCAGATTTGTTGATGGAGCCAACTGGGTTTTTCTCCACCACTTTGATCGAGATCTTCGGCCTCTTTTTAAATATT CTGATTGCGCTGGAAATTCTGGAGAACATTACCGCCTACTTGCAAAAGCAGGTGGTGCAGGTGGAGCTGGTGATCGTCAC CTCTTTGATTGCGGTGGCCCGCAAGATCATCATTTTTGATTTCGAGAAGCTGGGGGGGTTGGAGCTCATTGGCTTGGGGG CAGCGACGTTGGCCCTCTCGGTGAGTTATTGGCTGGTGCGGCGAGCCAAGCCTCCATCCAAGTCCGGGGAAAATTAG
Upstream 100 bases:
>100_bases CGCCCCAAGGGATCCCTGCCTGCTTCCCGGCAAGACGGTTGGGACGGATAATGTTGTCTCAGGATCAGGACATAAGGGTT TGGATCTGTCGGGGTTGGCG
Downstream 100 bases:
>100_bases GCTAGGACAGAATCCTGGTACGATGGGGATGGAGCTTTCCTGCAAGAATTGTGCGTGCGCGATCTAAGTTGGCCAGCCTG GTGAAGTTAGCTGTGCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 158; Mature: 158
Protein sequence:
>158_residues MRFLKWLLHNPHETEEEDPFLRAITRLESLISKLLSILMIGLIVVAVVDLARFLVADLLMEPTGFFSTTLIEIFGLFLNI LIALEILENITAYLQKQVVQVELVIVTSLIAVARKIIIFDFEKLGGLELIGLGAATLALSVSYWLVRRAKPPSKSGEN
Sequences:
>Translated_158_residues MRFLKWLLHNPHETEEEDPFLRAITRLESLISKLLSILMIGLIVVAVVDLARFLVADLLMEPTGFFSTTLIEIFGLFLNI LIALEILENITAYLQKQVVQVELVIVTSLIAVARKIIIFDFEKLGGLELIGLGAATLALSVSYWLVRRAKPPSKSGEN >Mature_158_residues MRFLKWLLHNPHETEEEDPFLRAITRLESLISKLLSILMIGLIVVAVVDLARFLVADLLMEPTGFFSTTLIEIFGLFLNI LIALEILENITAYLQKQVVQVELVIVTSLIAVARKIIIFDFEKLGGLELIGLGAATLALSVSYWLVRRAKPPSKSGEN
Specific function: Unknown
COG id: COG3431
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17674; Mature: 17674
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFLKWLLHNPHETEEEDPFLRAITRLESLISKLLSILMIGLIVVAVVDLARFLVADLLM CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EPTGFFSTTLIEIFGLFLNILIALEILENITAYLQKQVVQVELVIVTSLIAVARKIIIFD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEKLGGLELIGLGAATLALSVSYWLVRRAKPPSKSGEN HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRFLKWLLHNPHETEEEDPFLRAITRLESLISKLLSILMIGLIVVAVVDLARFLVADLLM CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EPTGFFSTTLIEIFGLFLNILIALEILENITAYLQKQVVQVELVIVTSLIAVARKIIIFD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FEKLGGLELIGLGAATLALSVSYWLVRRAKPPSKSGEN HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA