| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608914
Identifier: 86608914
GI number: 86608914
Start: 1516617
End: 1518803
Strand: Direct
Name: 86608914
Synonym: CYB_1446
Alternate gene names: NA
Gene position: 1516617-1518803 (Clockwise)
Preceding gene: 86608913
Following gene: 86608916
Centisome position: 49.78
GC content: 61.91
Gene sequence:
>2187_bases ATGCCGGATCCCGTCCCTCCCTTTCTCGTTGGCCAAGGCTATACTTCTCCAGCTCGACTGTCCCCCTCCCGGCGACGGCT GGGCTGGGCGTTGGCTTGGGGCTTGGGTTGGGCTGCTCTGCTTAACCTTTCTGCTCAGCATCCTTTGTTGGTGCGGATGG AGAGCGACGCCCAGGAGTGGCTGTACGCTTGGCGTGGCCCTCAGCAGCCTTCTCCCGAGGTGGTGATCGTCGGCATTGAT GGTCGTATAGGACTCGATCGCGACAGCGGTGCGGAGCACGTTCCCGCTAACGGGAACAGCGGACAGGGGGAAAGCAATGG CCGCACCAGTGGTGCAGAGCACCTTGGCCAACATCAAGTTGACTTCCTTCTGGAACGGGCCAACTACGCCGGCCTGACGT TGCGTCTACTGGAAGAAGCTGAGGCCAGGGTGGTGGTGCTAAACCTGCCCAGCAGCTTTGTGGTACCTCAAAACCTGGGC AACGAGAACTTAGATGCCCCTCTGCGTCAGGTGGTGCAGCGCTACCCAGATCGCTTGGTCTTGGCCACCCGCAGCAGCGA GAGCTTTGGCCGCTCCGAGATTAACATCTACAACCATTTTCTGCCCTTCTCTTCTCTGCGGCTGGAGTACCTGGTGCCGC CAGAGCATGTGCAGGGGGTGGTGCAACATCGGGTAGACAGTGCCGGGATCCTGCGCCAGGCCCAGTTGCGGGGGCTCTAC CTGCGCCGCGACAGCCAAGAGGAGCAGATGTTCGCCTCGGTCGAGGCTCTGGCTTTTGCCAAATACGACCCGGAGCGGGC CAGCCGCTGGTTTCGCGAGCGGGGGTTGCAGCCGATCCAATTCAACCCCCTCGGATCCCAGCACGGGATCCCCATCATCC CCATCGAACGGGTTTGCCCTCCAGCTGTTCTCCAGGCAGGATCCGGGTCTGTTGCCCCGATGATCAACCCCAGCCAAGCC TGCCGCGGCCAAGAAGGGATCCCTCCCCTCGATCCCGAAGTTGCCGACCAATTGCGGGACAAAATTGTCCTGGTGGGTTT TGTGGGCGGCTACCCCGAAACCTTCCCAGTGCGGACTGCGGATGGATCCCAGATTGCGGCGGTGGAGCTGCAGGCGCAAG TCCTCTCCAGCCTGCTCACCGGGGAGGTCTACCAATCCGTGCCGGGGGGGGTGGCGGTTGCGGTGGTCTTGCTGCTGGGA GTGGGAACGGGACTGCTTTTGGTGCTTTATCGTCCCCCCCTACGTTCGCGTCAGCGGTGCGGAGCACTTTTGAGCCCTTG GGGCTGGAAGCAACAGCAGTTTCTCCTGCGGCCTGTGGTGGGGCTTGCCGTTTACGAAGGGTGGGCTGTGGCCCAGTTTC TACTGGGGCGTTGGGTTTGGCCTCTCGTCTTGCCGGCCCTGGCCAGTGGGCTAACGGGGGTGAGCCTGCTGCTCACTTTG GTCATTGTGGAGAATCAAGAACGGCTCTTGGCCCAGCAACAGGAACTGGAGCGCCTGCGCCGAGCCGAACAGGAGGCCGC CATTGACCAGGCTCGCAAGCTGCTCTACCGAGTAGCCACCGACATTCACGATCGCGAGCTGCAGGAGCTGAAGGTGGTGA TGGACAACTTGGAGAGCTTGCAATGGCAGCAGCACCAGGGAAAAGCTCCCGATCCCACCGTCTACGACCACCTGCTCGAG CAACTGGAGAGGATCGGACGCGGGATCCGGAATCAGCTCAACGATGTGCGCACCCTAGCCGCCAAGCTGCGCATCTCCCC CAGCTTGCGAGAGGGGTTGCATCGCGGCATCGAGATCTATCTGGACGAGCTGATCCAAGCGGGCAGCCTGACGCTGTCTG TGGAGCGCCAACTGCAACCTCTGCAGGAGCCCAACACCGGCGAGTGGTTTGATCAGCGAGAAGACATCTTGCGCTTTTTG CGGGAGGCCATCGGCAATGTCATCGCCCATGTACAACCCCCCAAAGGCAATGCTTCCTTTGTCAAGGTGTCGCTGGCCCA AACGGAGCGCCACTGCTGCCTTTCCGTGGTCAACGATGGTATCGAGTACGCTCCCGGCCTCAGCGGCGGCTACGGCAGCA AGGCCATGAACACCATCGCCCGCTATCTACCCAAGGGATCTTGGCACCGCACCCGCACCCCGGAAGGCCATACCCATGTC GAGCTGCACTGGGAGATGCCGCTCTGA
Upstream 100 bases:
>100_bases GAAAACTCCATCGCGACAGCGGTGCGGAGCGCTTTTTAGCTGGCTCGCGTCTGCACTGCCGTTCGTGTGGTCGCGTCAGC GGTGCAAAGCCCTTTGCAAT
Downstream 100 bases:
>100_bases AAGACCTACACAGCACTGAACAGAACAGATTTTTGCTCAGCGCTGTTGCTTTCTTCCTGCTTCAGCAACCCTTGACTAGC GGTAGGTTTTAGACCTACCA
Product: sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 728; Mature: 727
Protein sequence:
>728_residues MPDPVPPFLVGQGYTSPARLSPSRRRLGWALAWGLGWAALLNLSAQHPLLVRMESDAQEWLYAWRGPQQPSPEVVIVGID GRIGLDRDSGAEHVPANGNSGQGESNGRTSGAEHLGQHQVDFLLERANYAGLTLRLLEEAEARVVVLNLPSSFVVPQNLG NENLDAPLRQVVQRYPDRLVLATRSSESFGRSEINIYNHFLPFSSLRLEYLVPPEHVQGVVQHRVDSAGILRQAQLRGLY LRRDSQEEQMFASVEALAFAKYDPERASRWFRERGLQPIQFNPLGSQHGIPIIPIERVCPPAVLQAGSGSVAPMINPSQA CRGQEGIPPLDPEVADQLRDKIVLVGFVGGYPETFPVRTADGSQIAAVELQAQVLSSLLTGEVYQSVPGGVAVAVVLLLG VGTGLLLVLYRPPLRSRQRCGALLSPWGWKQQQFLLRPVVGLAVYEGWAVAQFLLGRWVWPLVLPALASGLTGVSLLLTL VIVENQERLLAQQQELERLRRAEQEAAIDQARKLLYRVATDIHDRELQELKVVMDNLESLQWQQHQGKAPDPTVYDHLLE QLERIGRGIRNQLNDVRTLAAKLRISPSLREGLHRGIEIYLDELIQAGSLTLSVERQLQPLQEPNTGEWFDQREDILRFL REAIGNVIAHVQPPKGNASFVKVSLAQTERHCCLSVVNDGIEYAPGLSGGYGSKAMNTIARYLPKGSWHRTRTPEGHTHV ELHWEMPL
Sequences:
>Translated_728_residues MPDPVPPFLVGQGYTSPARLSPSRRRLGWALAWGLGWAALLNLSAQHPLLVRMESDAQEWLYAWRGPQQPSPEVVIVGID GRIGLDRDSGAEHVPANGNSGQGESNGRTSGAEHLGQHQVDFLLERANYAGLTLRLLEEAEARVVVLNLPSSFVVPQNLG NENLDAPLRQVVQRYPDRLVLATRSSESFGRSEINIYNHFLPFSSLRLEYLVPPEHVQGVVQHRVDSAGILRQAQLRGLY LRRDSQEEQMFASVEALAFAKYDPERASRWFRERGLQPIQFNPLGSQHGIPIIPIERVCPPAVLQAGSGSVAPMINPSQA CRGQEGIPPLDPEVADQLRDKIVLVGFVGGYPETFPVRTADGSQIAAVELQAQVLSSLLTGEVYQSVPGGVAVAVVLLLG VGTGLLLVLYRPPLRSRQRCGALLSPWGWKQQQFLLRPVVGLAVYEGWAVAQFLLGRWVWPLVLPALASGLTGVSLLLTL VIVENQERLLAQQQELERLRRAEQEAAIDQARKLLYRVATDIHDRELQELKVVMDNLESLQWQQHQGKAPDPTVYDHLLE QLERIGRGIRNQLNDVRTLAAKLRISPSLREGLHRGIEIYLDELIQAGSLTLSVERQLQPLQEPNTGEWFDQREDILRFL REAIGNVIAHVQPPKGNASFVKVSLAQTERHCCLSVVNDGIEYAPGLSGGYGSKAMNTIARYLPKGSWHRTRTPEGHTHV ELHWEMPL >Mature_727_residues PDPVPPFLVGQGYTSPARLSPSRRRLGWALAWGLGWAALLNLSAQHPLLVRMESDAQEWLYAWRGPQQPSPEVVIVGIDG RIGLDRDSGAEHVPANGNSGQGESNGRTSGAEHLGQHQVDFLLERANYAGLTLRLLEEAEARVVVLNLPSSFVVPQNLGN ENLDAPLRQVVQRYPDRLVLATRSSESFGRSEINIYNHFLPFSSLRLEYLVPPEHVQGVVQHRVDSAGILRQAQLRGLYL RRDSQEEQMFASVEALAFAKYDPERASRWFRERGLQPIQFNPLGSQHGIPIIPIERVCPPAVLQAGSGSVAPMINPSQAC RGQEGIPPLDPEVADQLRDKIVLVGFVGGYPETFPVRTADGSQIAAVELQAQVLSSLLTGEVYQSVPGGVAVAVVLLLGV GTGLLLVLYRPPLRSRQRCGALLSPWGWKQQQFLLRPVVGLAVYEGWAVAQFLLGRWVWPLVLPALASGLTGVSLLLTLV IVENQERLLAQQQELERLRRAEQEAAIDQARKLLYRVATDIHDRELQELKVVMDNLESLQWQQHQGKAPDPTVYDHLLEQ LERIGRGIRNQLNDVRTLAAKLRISPSLREGLHRGIEIYLDELIQAGSLTLSVERQLQPLQEPNTGEWFDQREDILRFLR EAIGNVIAHVQPPKGNASFVKVSLAQTERHCCLSVVNDGIEYAPGLSGGYGSKAMNTIARYLPKGSWHRTRTPEGHTHVE LHWEMPL
Specific function: Unknown
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80858; Mature: 80726
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDPVPPFLVGQGYTSPARLSPSRRRLGWALAWGLGWAALLNLSAQHPLLVRMESDAQEW CCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH LYAWRGPQQPSPEVVIVGIDGRIGLDRDSGAEHVPANGNSGQGESNGRTSGAEHLGQHQV HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH DFLLERANYAGLTLRLLEEAEARVVVLNLPSSFVVPQNLGNENLDAPLRQVVQRYPDRLV HHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHCCCEEE LATRSSESFGRSEINIYNHFLPFSSLRLEYLVPPEHVQGVVQHRVDSAGILRQAQLRGLY EEECCCCCCCCCHHHHHHHHCCHHHCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHH LRRDSQEEQMFASVEALAFAKYDPERASRWFRERGLQPIQFNPLGSQHGIPIIPIERVCP EECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEHHHCCC PAVLQAGSGSVAPMINPSQACRGQEGIPPLDPEVADQLRDKIVLVGFVGGYPETFPVRTA HHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCEECC DGSQIAAVELQAQVLSSLLTGEVYQSVPGGVAVAVVLLLGVGTGLLLVLYRPPLRSRQRC CCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHEEEEECCCCCHHHHC GALLSPWGWKQQQFLLRPVVGLAVYEGWAVAQFLLGRWVWPLVLPALASGLTGVSLLLTL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VIVENQERLLAQQQELERLRRAEQEAAIDQARKLLYRVATDIHDRELQELKVVMDNLESL HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QWQQHQGKAPDPTVYDHLLEQLERIGRGIRNQLNDVRTLAAKLRISPSLREGLHRGIEIY HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LDELIQAGSLTLSVERQLQPLQEPNTGEWFDQREDILRFLREAIGNVIAHVQPPKGNASF HHHHHHCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCE VKVSLAQTERHCCLSVVNDGIEYAPGLSGGYGSKAMNTIARYLPKGSWHRTRTPEGHTHV EEEEHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEE ELHWEMPL EEEECCCC >Mature Secondary Structure PDPVPPFLVGQGYTSPARLSPSRRRLGWALAWGLGWAALLNLSAQHPLLVRMESDAQEW CCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH LYAWRGPQQPSPEVVIVGIDGRIGLDRDSGAEHVPANGNSGQGESNGRTSGAEHLGQHQV HHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH DFLLERANYAGLTLRLLEEAEARVVVLNLPSSFVVPQNLGNENLDAPLRQVVQRYPDRLV HHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHCCCEEE LATRSSESFGRSEINIYNHFLPFSSLRLEYLVPPEHVQGVVQHRVDSAGILRQAQLRGLY EEECCCCCCCCCHHHHHHHHCCHHHCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHH LRRDSQEEQMFASVEALAFAKYDPERASRWFRERGLQPIQFNPLGSQHGIPIIPIERVCP EECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEHHHCCC PAVLQAGSGSVAPMINPSQACRGQEGIPPLDPEVADQLRDKIVLVGFVGGYPETFPVRTA HHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCEECC DGSQIAAVELQAQVLSSLLTGEVYQSVPGGVAVAVVLLLGVGTGLLLVLYRPPLRSRQRC CCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHEEEEECCCCCHHHHC GALLSPWGWKQQQFLLRPVVGLAVYEGWAVAQFLLGRWVWPLVLPALASGLTGVSLLLTL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VIVENQERLLAQQQELERLRRAEQEAAIDQARKLLYRVATDIHDRELQELKVVMDNLESL HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QWQQHQGKAPDPTVYDHLLEQLERIGRGIRNQLNDVRTLAAKLRISPSLREGLHRGIEIY HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LDELIQAGSLTLSVERQLQPLQEPNTGEWFDQREDILRFLREAIGNVIAHVQPPKGNASF HHHHHHCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCE VKVSLAQTERHCCLSVVNDGIEYAPGLSGGYGSKAMNTIARYLPKGSWHRTRTPEGHTHV EEEEHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEE ELHWEMPL EEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA