| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is hslO [H]
Identifier: 86608905
GI number: 86608905
Start: 1507121
End: 1508080
Strand: Reverse
Name: hslO [H]
Synonym: CYB_1437
Alternate gene names: 86608905
Gene position: 1508080-1507121 (Counterclockwise)
Preceding gene: 86608910
Following gene: 86608904
Centisome position: 49.5
GC content: 61.04
Gene sequence:
>960_bases ATGACGGATGCCTCTGGGTCAGAACGATTGAAGCGAGCGAAAGGTATTTCTGAGGGTACGCCCTCATCTCTGCCGGATCA CCTCATCCGGGCCACGGCGGCAGAAGGCAAAATCCGAGTGGTGGGCTTGGTGGCCACCCAGGCGGTACAAGAGGCAAGGG AGCGGCACAAGCTCTCCTATGTGGCGACAGTGGCCTTGGGGCGGGCCATGAGCGCAGCCCTGTTGCTGGCGGCCAACTTG AAGCGACGCCAGGCGCGGATTAACCTGCAACTGAAAGGGAATGGCCCCTTGGGCAACATCTGGGTGGATGCCGGCTTGGA TGGCACGGTACGCGGGTATGTGAGCAACCCCGCCATTGAGCTTCCTCTCACTGCCGAGAGCAAGTTGGATGTGGGCCAAG CCGTTGGGCGCTATGGCTACCTCCATGTGCTGCGGGATCTGGGGTATGGCCAGCCTTACACCAGCGCGGTGGAGCTGGTT TCGGGAGAGGTGGGAGACGACATCACCTACTACCTCTCCTCCTCAGAGCAGATTCCCTCGGCAGTCCTTCTGGGAGTAAA TCTCGACTCACAGCGGGTACGCGCCGCCGGCGGAGTGTTGTTGCAGCTGATGCCAGGGGCGCCGGCCAGTCTGATCCCAG AGATGGAAGCCCGTTTGGCCAAAGTGGAAGAATTTAGCCCGATGTTGGCTTGCGGCGGCGGCTTGCGGGAGCTGTTGCAA CTTTGCCTGGGCGACCTGGATCTGAAAATTGCGCCGGAAATGCGCACCATCCGCTTCTACTGCAAGTGCAATTCCGACCG AGTGAAGGGGGCCCTGCGCATGCTGGGGCGGGACGAGTTGCTCGATATGATCCACACCGACAAGGGGGCAGAAGCGGTTT GCCAATTCTGCAACGAGGTCTACCGCATCTCGGAAGACGAGCTGCGCTCGATTGTGGCGGAGATGTCGGCCACCCCCTGA
Upstream 100 bases:
>100_bases CAAGAGAGGGGCTACAATCTCACTTAGACTCACTTAGAATGAAGGCTGAGTCGCCAGGGGATCCCTGCAGGCTTGGTTTA AGACATGCGTTGAGGTTGCG
Downstream 100 bases:
>100_bases TGGCACAATGATGGCCAACTACGGGATCCCGATTCTGACACCTCTCGATGTTGTCTGAGCCCCCGGTTGAGTTGGTTGAA TTATCGGTTGTTGTCCCCTG
Product: Hsp33-like chaperonin
Products: NA
Alternate protein names: Heat shock protein 33 homolog; HSP33 [H]
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MTDASGSERLKRAKGISEGTPSSLPDHLIRATAAEGKIRVVGLVATQAVQEARERHKLSYVATVALGRAMSAALLLAANL KRRQARINLQLKGNGPLGNIWVDAGLDGTVRGYVSNPAIELPLTAESKLDVGQAVGRYGYLHVLRDLGYGQPYTSAVELV SGEVGDDITYYLSSSEQIPSAVLLGVNLDSQRVRAAGGVLLQLMPGAPASLIPEMEARLAKVEEFSPMLACGGGLRELLQ LCLGDLDLKIAPEMRTIRFYCKCNSDRVKGALRMLGRDELLDMIHTDKGAEAVCQFCNEVYRISEDELRSIVAEMSATP
Sequences:
>Translated_319_residues MTDASGSERLKRAKGISEGTPSSLPDHLIRATAAEGKIRVVGLVATQAVQEARERHKLSYVATVALGRAMSAALLLAANL KRRQARINLQLKGNGPLGNIWVDAGLDGTVRGYVSNPAIELPLTAESKLDVGQAVGRYGYLHVLRDLGYGQPYTSAVELV SGEVGDDITYYLSSSEQIPSAVLLGVNLDSQRVRAAGGVLLQLMPGAPASLIPEMEARLAKVEEFSPMLACGGGLRELLQ LCLGDLDLKIAPEMRTIRFYCKCNSDRVKGALRMLGRDELLDMIHTDKGAEAVCQFCNEVYRISEDELRSIVAEMSATP >Mature_318_residues TDASGSERLKRAKGISEGTPSSLPDHLIRATAAEGKIRVVGLVATQAVQEARERHKLSYVATVALGRAMSAALLLAANLK RRQARINLQLKGNGPLGNIWVDAGLDGTVRGYVSNPAIELPLTAESKLDVGQAVGRYGYLHVLRDLGYGQPYTSAVELVS GEVGDDITYYLSSSEQIPSAVLLGVNLDSQRVRAAGGVLLQLMPGAPASLIPEMEARLAKVEEFSPMLACGGGLRELLQL CLGDLDLKIAPEMRTIRFYCKCNSDRVKGALRMLGRDELLDMIHTDKGAEAVCQFCNEVYRISEDELRSIVAEMSATP
Specific function: Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress [H]
COG id: COG1281
COG function: function code O; Disulfide bond chaperones of the HSP33 family
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HSP33 family [H]
Homologues:
Organism=Escherichia coli, GI87082260, Length=288, Percent_Identity=24.3055555555556, Blast_Score=68, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000397 - InterPro: IPR016154 - InterPro: IPR016153 [H]
Pfam domain/function: PF01430 HSP33 [H]
EC number: NA
Molecular weight: Translated: 34337; Mature: 34206
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDASGSERLKRAKGISEGTPSSLPDHLIRATAAEGKIRVVGLVATQAVQEARERHKLSY CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHH VATVALGRAMSAALLLAANLKRRQARINLQLKGNGPLGNIWVDAGLDGTVRGYVSNPAIE HHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCEEEEECCCCCCEEEEECCCEEE LPLTAESKLDVGQAVGRYGYLHVLRDLGYGQPYTSAVELVSGEVGDDITYYLSSSEQIPS EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC AVLLGVNLDSQRVRAAGGVLLQLMPGAPASLIPEMEARLAKVEEFSPMLACGGGLRELLQ EEEEECCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHH LCLGDLDLKIAPEMRTIRFYCKCNSDRVKGALRMLGRDELLDMIHTDKGAEAVCQFCNEV HHHCCCCEEECCCCEEEEEEEEECCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHH YRISEDELRSIVAEMSATP HCCCHHHHHHHHHHHCCCC >Mature Secondary Structure TDASGSERLKRAKGISEGTPSSLPDHLIRATAAEGKIRVVGLVATQAVQEARERHKLSY CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHH VATVALGRAMSAALLLAANLKRRQARINLQLKGNGPLGNIWVDAGLDGTVRGYVSNPAIE HHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCEEEEECCCCCCEEEEECCCEEE LPLTAESKLDVGQAVGRYGYLHVLRDLGYGQPYTSAVELVSGEVGDDITYYLSSSEQIPS EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCC AVLLGVNLDSQRVRAAGGVLLQLMPGAPASLIPEMEARLAKVEEFSPMLACGGGLRELLQ EEEEECCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHH LCLGDLDLKIAPEMRTIRFYCKCNSDRVKGALRMLGRDELLDMIHTDKGAEAVCQFCNEV HHHCCCCEEECCCCEEEEEEEEECCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHH YRISEDELRSIVAEMSATP HCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA