Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608857

Identifier: 86608857

GI number: 86608857

Start: 1458975

End: 1460996

Strand: Direct

Name: 86608857

Synonym: CYB_1388

Alternate gene names: NA

Gene position: 1458975-1460996 (Clockwise)

Preceding gene: 86608855

Following gene: 86608858

Centisome position: 47.89

GC content: 57.62

Gene sequence:

>2022_bases
ATGCAAATTCAACTGAGCTGGGAAGATCCCATCACCGAAGAACAGCAGGAGCTGATTTTTCCATTGCCTCTTGCCTTGGG
CAGGGAGCTGGCCCAATTGCCACAGGAATGGCAAGGTCGAGAAGTGGCGCGGGCTGTGTTTGCCAGCCAGGAGATCTCCC
GTTATCACGCCCTCGTCTATCTCGGTGAGGATGGCCAGGTCATCTATGAAGATCGCAGTGCCAACGGCAGCCGCATCAAT
GGGGAAAAAATCCGTCAGGCACGCCGGGTGCTCCAGGGGGGAGAAGTGGTGGAGCTTGGCCCCTACAGCATCACCGTGGG
TTTGGTGTCCCCCAGGGATCCCAATGCCACCCTTCTGACCGCCACCCCTACTCTTTTGCTGGAGCCGCGCACCGAACTGA
TTCGCCCGGCCACCCAACCCGACACCGCATTTGAGGTTCCCCCGGCTTCCACGGTGGTTTTTGCCCCAGAGCAGCTTCCC
GAGGTGCGGCCTGGCTCGGATTTTCCGCCGCCGGATTTGTTTCGAGCTGAGCAAATTGCCCTGAGCGCCCTCAAAGCCAC
CGGACTACCTGTGGAAGAGACCCTCTATTTGGCCTTGGGCGGCGGTATCGGCAGCTTTGTCTGGGTGGATACCCTGCGCA
TCTACGGGGTCAGACCGGAACACATCCGCGTCATCAGCATTGCCCGCAAACCCTACGAACGGTATGAACGGCTTTTGACC
AACTGCCAGATCCCCCGCTGGAAGCGAATTCGCTCTGGCTCCGATTCTTGTCCAGACAACATTTGGGGCTGGCCTGGCTA
TGCTCTGCGGGATGCTTGGCGTTCCTTTTTCTCCGGCCGATTGTTGGAAGCATTCGGCTTTTTGTGGCAGGTATTTAGTG
AGCCCTTGTTGGCAGATACCTATACGCCGCGGGCGGGGGATGTATTTGCCTCAATGGATCGGGAGGCAGCCCGAATTGGT
TGGGAGCAAATGTTGTGTTACGGCCATATTCGCGCCATTCGCAAAACGGAGGATGGGCGATATGTGGTGGCCTATTCGGC
AACGCGGCCCGGCCATACGGATCACCGTTTTATGGTGGCCAAGTATCTCCATTTGGCAACTGGATATCCGGCCATCAAGT
TGCTCAACGACCTGCAGGAGTTTCGCGAAAAAACAGGAGATTTGAGATCGGTGGTACACGGCTATGAGCCTCATGATCAC
GTTTATGAGCAGTTGGAGAAACAAGGTGGCACCGTCCTAATTCGGGGATTTGGGATCGTCGCCTCTCAGGTGATGGAACG
CCTTTACGAAGCCCGCAAAGTCAACCCCCGCATCTCGGTGGTGCATCTGAGCCGTGCGCCCAAAAGCGGTAATCGCTTCG
GACGAGCCAAACGGGCAGTGGATAACCATTGGGAGTTTCAGCCCTTCAACTGGCCCAAGGGCACTTGGGGAGGAGTTCTG
CGTGCCAAATTGGAAGCGGCGACCCCCCTGGAACGGCGCGAACTGCTGGAAGCTTGGGGCGGCACCACGACAGCAAGTCG
GCGGAAATGGCGGCGGATCGTGCGGCAAGGGTTGCGAGAGGGCTGGTACTCGATTGTGTTTGGCAAGGTGGAGCTGGTGG
TTCCCGGCGACAAGGGTAAGCCGGTGACCTACATTCGAGGTACCCACAACAACACACAATTAAAGGTGGAGGCCGATTTC
GTTATCGACTGTACGGGTTTGGTTTCGGATCCCATGACCAATCCTCTCCTCAACGATCTAATTACCCACTACAACCTGCC
CCTCAATCCTCACGGGCGCTTGCATGTCTCCAACGACTTTGAGCTGGTGGAGATGCGCAACCGGGATGGGCGAATGTACG
CCGCTGGGATCATCACCTTGGGCGGGCCCTATGCGCCGGTGGATACGTTTTTGGGTTTACAGTACTGTGCCCATCGCTCG
GTGGAACACCTGGCTCGACTGCGGGCACCGGGGGTCAAAGGTCTAGAAGGGATCCGATCCCTGTGGCAATGGTGCAAGTG
GGCCCTAAACATCAGCCCCTAG

Upstream 100 bases:

>100_bases
GGCAAACCAAAAGTGACCTGTGAGGTCGCGCTGTTCTGTGTTTTCTCAATGGCCTCTTCATGATCTTTGTACATGATCTT
TGTAAAGGTGAGCAGAAGCT

Downstream 100 bases:

>100_bases
CTTGCCGACATTGGGCAACGCTTCTGGATTTTGTGAGATGTTTTTGGTTATCAACGCTGTCCCACACGTAAAACATTGGC
GGCACACCATGGCCATTCCC

Product: FHA domain-containing protein

Products: NA

Alternate protein names: FHA Domain Containing Protein; FHA Domain Protein

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MQIQLSWEDPITEEQQELIFPLPLALGRELAQLPQEWQGREVARAVFASQEISRYHALVYLGEDGQVIYEDRSANGSRIN
GEKIRQARRVLQGGEVVELGPYSITVGLVSPRDPNATLLTATPTLLLEPRTELIRPATQPDTAFEVPPASTVVFAPEQLP
EVRPGSDFPPPDLFRAEQIALSALKATGLPVEETLYLALGGGIGSFVWVDTLRIYGVRPEHIRVISIARKPYERYERLLT
NCQIPRWKRIRSGSDSCPDNIWGWPGYALRDAWRSFFSGRLLEAFGFLWQVFSEPLLADTYTPRAGDVFASMDREAARIG
WEQMLCYGHIRAIRKTEDGRYVVAYSATRPGHTDHRFMVAKYLHLATGYPAIKLLNDLQEFREKTGDLRSVVHGYEPHDH
VYEQLEKQGGTVLIRGFGIVASQVMERLYEARKVNPRISVVHLSRAPKSGNRFGRAKRAVDNHWEFQPFNWPKGTWGGVL
RAKLEAATPLERRELLEAWGGTTTASRRKWRRIVRQGLREGWYSIVFGKVELVVPGDKGKPVTYIRGTHNNTQLKVEADF
VIDCTGLVSDPMTNPLLNDLITHYNLPLNPHGRLHVSNDFELVEMRNRDGRMYAAGIITLGGPYAPVDTFLGLQYCAHRS
VEHLARLRAPGVKGLEGIRSLWQWCKWALNISP

Sequences:

>Translated_673_residues
MQIQLSWEDPITEEQQELIFPLPLALGRELAQLPQEWQGREVARAVFASQEISRYHALVYLGEDGQVIYEDRSANGSRIN
GEKIRQARRVLQGGEVVELGPYSITVGLVSPRDPNATLLTATPTLLLEPRTELIRPATQPDTAFEVPPASTVVFAPEQLP
EVRPGSDFPPPDLFRAEQIALSALKATGLPVEETLYLALGGGIGSFVWVDTLRIYGVRPEHIRVISIARKPYERYERLLT
NCQIPRWKRIRSGSDSCPDNIWGWPGYALRDAWRSFFSGRLLEAFGFLWQVFSEPLLADTYTPRAGDVFASMDREAARIG
WEQMLCYGHIRAIRKTEDGRYVVAYSATRPGHTDHRFMVAKYLHLATGYPAIKLLNDLQEFREKTGDLRSVVHGYEPHDH
VYEQLEKQGGTVLIRGFGIVASQVMERLYEARKVNPRISVVHLSRAPKSGNRFGRAKRAVDNHWEFQPFNWPKGTWGGVL
RAKLEAATPLERRELLEAWGGTTTASRRKWRRIVRQGLREGWYSIVFGKVELVVPGDKGKPVTYIRGTHNNTQLKVEADF
VIDCTGLVSDPMTNPLLNDLITHYNLPLNPHGRLHVSNDFELVEMRNRDGRMYAAGIITLGGPYAPVDTFLGLQYCAHRS
VEHLARLRAPGVKGLEGIRSLWQWCKWALNISP
>Mature_673_residues
MQIQLSWEDPITEEQQELIFPLPLALGRELAQLPQEWQGREVARAVFASQEISRYHALVYLGEDGQVIYEDRSANGSRIN
GEKIRQARRVLQGGEVVELGPYSITVGLVSPRDPNATLLTATPTLLLEPRTELIRPATQPDTAFEVPPASTVVFAPEQLP
EVRPGSDFPPPDLFRAEQIALSALKATGLPVEETLYLALGGGIGSFVWVDTLRIYGVRPEHIRVISIARKPYERYERLLT
NCQIPRWKRIRSGSDSCPDNIWGWPGYALRDAWRSFFSGRLLEAFGFLWQVFSEPLLADTYTPRAGDVFASMDREAARIG
WEQMLCYGHIRAIRKTEDGRYVVAYSATRPGHTDHRFMVAKYLHLATGYPAIKLLNDLQEFREKTGDLRSVVHGYEPHDH
VYEQLEKQGGTVLIRGFGIVASQVMERLYEARKVNPRISVVHLSRAPKSGNRFGRAKRAVDNHWEFQPFNWPKGTWGGVL
RAKLEAATPLERRELLEAWGGTTTASRRKWRRIVRQGLREGWYSIVFGKVELVVPGDKGKPVTYIRGTHNNTQLKVEADF
VIDCTGLVSDPMTNPLLNDLITHYNLPLNPHGRLHVSNDFELVEMRNRDGRMYAAGIITLGGPYAPVDTFLGLQYCAHRS
VEHLARLRAPGVKGLEGIRSLWQWCKWALNISP

Specific function: Unknown

COG id: COG1716

COG function: function code T; FOG: FHA domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76137; Mature: 76137

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50006 FHA_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIQLSWEDPITEEQQELIFPLPLALGRELAQLPQEWQGREVARAVFASQEISRYHALVY
CEEEEECCCCCCCCHHHEEECCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCEEEEEE
LGEDGQVIYEDRSANGSRINGEKIRQARRVLQGGEVVELGPYSITVGLVSPRDPNATLLT
ECCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEEECCCCCCCEEEE
ATPTLLLEPRTELIRPATQPDTAFEVPPASTVVFAPEQLPEVRPGSDFPPPDLFRAEQIA
ECCEEEECCCHHHHCCCCCCCCCEECCCCCEEEECHHHCCCCCCCCCCCCCCHHHHHHHH
LSALKATGLPVEETLYLALGGGIGSFVWVDTLRIYGVRPEHIRVISIARKPYERYERLLT
HHHHHHCCCCHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEHHCHHHHHHHHHH
NCQIPRWKRIRSGSDSCPDNIWGWPGYALRDAWRSFFSGRLLEAFGFLWQVFSEPLLADT
CCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
YTPRAGDVFASMDREAARIGWEQMLCYGHIRAIRKTEDGRYVVAYSATRPGHTDHRFMVA
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHH
KYLHLATGYPAIKLLNDLQEFREKTGDLRSVVHGYEPHDHVYEQLEKQGGTVLIRGFGIV
HHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHH
ASQVMERLYEARKVNPRISVVHLSRAPKSGNRFGRAKRAVDNHWEFQPFNWPKGTWGGVL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
RAKLEAATPLERRELLEAWGGTTTASRRKWRRIVRQGLREGWYSIVFGKVELVVPGDKGK
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCC
PVTYIRGTHNNTQLKVEADFVIDCTGLVSDPMTNPLLNDLITHYNLPLNPHGRLHVSNDF
CEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC
ELVEMRNRDGRMYAAGIITLGGPYAPVDTFLGLQYCAHRSVEHLARLRAPGVKGLEGIRS
EEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LWQWCKWALNISP
HHHHHHHHCCCCC
>Mature Secondary Structure
MQIQLSWEDPITEEQQELIFPLPLALGRELAQLPQEWQGREVARAVFASQEISRYHALVY
CEEEEECCCCCCCCHHHEEECCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCEEEEEE
LGEDGQVIYEDRSANGSRINGEKIRQARRVLQGGEVVELGPYSITVGLVSPRDPNATLLT
ECCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEEEEEECCCCCCCEEEE
ATPTLLLEPRTELIRPATQPDTAFEVPPASTVVFAPEQLPEVRPGSDFPPPDLFRAEQIA
ECCEEEECCCHHHHCCCCCCCCCEECCCCCEEEECHHHCCCCCCCCCCCCCCHHHHHHHH
LSALKATGLPVEETLYLALGGGIGSFVWVDTLRIYGVRPEHIRVISIARKPYERYERLLT
HHHHHHCCCCHHHEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEHHCHHHHHHHHHH
NCQIPRWKRIRSGSDSCPDNIWGWPGYALRDAWRSFFSGRLLEAFGFLWQVFSEPLLADT
CCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
YTPRAGDVFASMDREAARIGWEQMLCYGHIRAIRKTEDGRYVVAYSATRPGHTDHRFMVA
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHH
KYLHLATGYPAIKLLNDLQEFREKTGDLRSVVHGYEPHDHVYEQLEKQGGTVLIRGFGIV
HHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEHHHH
ASQVMERLYEARKVNPRISVVHLSRAPKSGNRFGRAKRAVDNHWEFQPFNWPKGTWGGVL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
RAKLEAATPLERRELLEAWGGTTTASRRKWRRIVRQGLREGWYSIVFGKVELVVPGDKGK
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCC
PVTYIRGTHNNTQLKVEADFVIDCTGLVSDPMTNPLLNDLITHYNLPLNPHGRLHVSNDF
CEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC
ELVEMRNRDGRMYAAGIITLGGPYAPVDTFLGLQYCAHRSVEHLARLRAPGVKGLEGIRS
EEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LWQWCKWALNISP
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA