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The map label for this gene is trmE [C]

Identifier: 86608838

GI number: 86608838

Start: 1434172

End: 1435719

Strand: Reverse

Name: trmE [C]

Synonym: CYB_1363

Alternate gene names: 86608838

Gene position: 1435719-1434172 (Counterclockwise)

Preceding gene: 86608839

Following gene: 86608836

Centisome position: 47.12

GC content: 62.08

Gene sequence:

>1548_bases
ATGCGGTCGCTCCCTTACCTGCGCTTGCTGCTGCTGTTGGCGCTGTTGGCCTCGTTCACCGGGCTGATCGTCTGGCTGAT
CCAATCGTTTCTCGATCTGTACTACGCCACCCGCTACCACCCGATTTTGGGGGGGCTGTTGATTGGGGTGCTGGTGCTGC
TGCTGCTGGTGTTTTTGGCCGCTGCCATCTACTACTTGTTTCTGTTTCGCCAACCCGCCCCCAGCAGGAGGGAAATTACC
CAACCCCTTGCCTTGCCGGAGACGGCTTTGGAAAAGCGGAAAGCGGCGCAACAGAACTTGGCTCAACTGGAGGCGCAGCT
AGCGCAAATCCAGGATCAGGTGGCGCGGGCAGCGCTGGCAGAACGGTCGGCCCTACTGGCCAAACAATTGGCCCAGCCCC
AGCTGAAGGTGGTGGTCTTCGGCACTGGGTCGGCGGGCAAGACTTCTTTGGTCAACGCGCTGCTGGGGCGGCGGGCGGGG
GCGGTGGGGGCCACTCTGGGCACCACCCAGGCGGTGGCTTGTTACGACTGGAACTTGCCTGGGATCCCGCAGCCGGTGCA
GATCCTGGATTGCCCCGGCATTTTGGAGATCGGCCCGGCAGGGGTGATGCGGGAACAGGAGGCGCAAGCCCAAGCCCAAG
CTGCCGATCTGCTGCTGGTGGTGGTGGATGGGGATCTGCGCCAGTCAGAGGTGGATCCCTTGCGCCGGTTGATCGCCCTG
GGCAAGCGGGCCTTGCTAATCCTGAACAAAGCGGATCGCTACACCTCAGAAGAACGGCAGATCCTCTTGCAACGCCTGCG
GGAGCGGGTCTACCCCCTGATTCCACCTCAGGATGTGTTGATAGCTGCCGCTGCTCCAGCCCCTGTGCGGGTGGGATCCC
AAACCTGGCGACCGGAGCCGGAGGTGGCGGCGGTGCGGGATCGCGTGCAGGCGGTGCTCTATGCCGAGGGGGGATCCCTG
GCCTTGGACAATGCCCTGCTGCAATCGCAACAGTTGGGGGAAGAGGCCAAACGGATTCTCCAAGCCCAACTGCGCCGGCA
GGCGGAGGAGGTGATCGATCGCTTTCAGTGGATTGTTACAGGAGTGGTGTTCGCCAACCCCATCCCGGCGGTGGATCTGC
TGGCCATTGCCGCCATCAACGCCCAGATGGTGGTGGAACTGGGATCCCTTTACGGCTGCAAAATGAACCTGCAGCAGGGG
CGGGAGCTGGCCTTGTCTCTGGCCAAAACCCTAGCGGGCTTGGGCTTGGTGGAAGGGGCGATCCAACTGACCACGGGGAT
CTTGGCCACCGTTGCCGAAGTGAGCGTCGTCGGTTTTCTGGCGACAGCCCCCATTCAGGCAGCCAGTGCTGGCTATCTCA
CCCGCATTGCCGGCAAGAGCTTCATTGAGTATTTCCAGCACAACCAAAGCTGGGGAGAAGGGGGGATGCAGGCGGTGGTC
AAAGCCCAGGTGCAAAATACCCAAAAATCCGGTTGGCTCAAAGAGTTTGTCCGCGAGGCTGCCCGGCGCATCTTCCGAAA
TGGGATGGCCAACCCAAGGGATCCCTAA

Upstream 100 bases:

>100_bases
CAGAAGGCGACATCTAGGTAGCCGGATATGCTCAGCCGCGGGTAGAGTCAAAAGGACTCCGTCCCGCTGACGCGAACGGT
TGTGGCCTTGTTGGATCCCT

Downstream 100 bases:

>100_bases
TGGCCGCTCAGGGCAATATCCGTCGGCAGGAAGGCCAGCTTCAGTTGCGCCACATAATCGGCGTAGCTCAGTGCCGGCCC
AGTGTCCCAATCCGCCAAGC

Product: GTP-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MRSLPYLRLLLLLALLASFTGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLAAAIYYLFLFRQPAPSRREIT
QPLALPETALEKRKAAQQNLAQLEAQLAQIQDQVARAALAERSALLAKQLAQPQLKVVVFGTGSAGKTSLVNALLGRRAG
AVGATLGTTQAVACYDWNLPGIPQPVQILDCPGILEIGPAGVMREQEAQAQAQAADLLLVVVDGDLRQSEVDPLRRLIAL
GKRALLILNKADRYTSEERQILLQRLRERVYPLIPPQDVLIAAAAPAPVRVGSQTWRPEPEVAAVRDRVQAVLYAEGGSL
ALDNALLQSQQLGEEAKRILQAQLRRQAEEVIDRFQWIVTGVVFANPIPAVDLLAIAAINAQMVVELGSLYGCKMNLQQG
RELALSLAKTLAGLGLVEGAIQLTTGILATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQHNQSWGEGGMQAVV
KAQVQNTQKSGWLKEFVREAARRIFRNGMANPRDP

Sequences:

>Translated_515_residues
MRSLPYLRLLLLLALLASFTGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLAAAIYYLFLFRQPAPSRREIT
QPLALPETALEKRKAAQQNLAQLEAQLAQIQDQVARAALAERSALLAKQLAQPQLKVVVFGTGSAGKTSLVNALLGRRAG
AVGATLGTTQAVACYDWNLPGIPQPVQILDCPGILEIGPAGVMREQEAQAQAQAADLLLVVVDGDLRQSEVDPLRRLIAL
GKRALLILNKADRYTSEERQILLQRLRERVYPLIPPQDVLIAAAAPAPVRVGSQTWRPEPEVAAVRDRVQAVLYAEGGSL
ALDNALLQSQQLGEEAKRILQAQLRRQAEEVIDRFQWIVTGVVFANPIPAVDLLAIAAINAQMVVELGSLYGCKMNLQQG
RELALSLAKTLAGLGLVEGAIQLTTGILATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQHNQSWGEGGMQAVV
KAQVQNTQKSGWLKEFVREAARRIFRNGMANPRDP
>Mature_515_residues
MRSLPYLRLLLLLALLASFTGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLAAAIYYLFLFRQPAPSRREIT
QPLALPETALEKRKAAQQNLAQLEAQLAQIQDQVARAALAERSALLAKQLAQPQLKVVVFGTGSAGKTSLVNALLGRRAG
AVGATLGTTQAVACYDWNLPGIPQPVQILDCPGILEIGPAGVMREQEAQAQAQAADLLLVVVDGDLRQSEVDPLRRLIAL
GKRALLILNKADRYTSEERQILLQRLRERVYPLIPPQDVLIAAAAPAPVRVGSQTWRPEPEVAAVRDRVQAVLYAEGGSL
ALDNALLQSQQLGEEAKRILQAQLRRQAEEVIDRFQWIVTGVVFANPIPAVDLLAIAAINAQMVVELGSLYGCKMNLQQG
RELALSLAKTLAGLGLVEGAIQLTTGILATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQHNQSWGEGGMQAVV
KAQVQNTQKSGWLKEFVREAARRIFRNGMANPRDP

Specific function: Exhibits A Very High Intrinsic Gtpase Hydrolysis Rate. Involved In The Biosynthesis Of The Hypermodified Nucleoside 5- Methylaminomethyl-2-Thiouridine, Which Is Found In The Wobble Position Of Some Trnas. [C]

COG id: COG1100

COG function: function code R; GTPase SAR1 and related small G proteins

Gene ontology:

Cell location: Cytoplasmic; may also be associated with the inner membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55951; Mature: 55951

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLPYLRLLLLLALLASFTGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIYYLFLFRQPAPSRREITQPLALPETALEKRKAAQQNLAQLEAQLAQIQDQVARAALA
HHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERSALLAKQLAQPQLKVVVFGTGSAGKTSLVNALLGRRAGAVGATLGTTQAVACYDWNLP
HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
GIPQPVQILDCPGILEIGPAGVMREQEAQAQAQAADLLLVVVDGDLRQSEVDPLRRLIAL
CCCCCCCEECCCCCCEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHC
GKRALLILNKADRYTSEERQILLQRLRERVYPLIPPQDVLIAAAAPAPVRVGSQTWRPEP
CCHHEEEEECCHHCCCHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCCCCCCCCCCCCC
EVAAVRDRVQAVLYAEGGSLALDNALLQSQQLGEEAKRILQAQLRRQAEEVIDRFQWIVT
HHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVFANPIPAVDLLAIAAINAQMVVELGSLYGCKMNLQQGRELALSLAKTLAGLGLVEGA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IQLTTGILATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQHNQSWGEGGMQAVV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
KAQVQNTQKSGWLKEFVREAARRIFRNGMANPRDP
HHHHHHCHHCHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRSLPYLRLLLLLALLASFTGLIVWLIQSFLDLYYATRYHPILGGLLIGVLVLLLLVFLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAIYYLFLFRQPAPSRREITQPLALPETALEKRKAAQQNLAQLEAQLAQIQDQVARAALA
HHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERSALLAKQLAQPQLKVVVFGTGSAGKTSLVNALLGRRAGAVGATLGTTQAVACYDWNLP
HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
GIPQPVQILDCPGILEIGPAGVMREQEAQAQAQAADLLLVVVDGDLRQSEVDPLRRLIAL
CCCCCCCEECCCCCCEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHHHC
GKRALLILNKADRYTSEERQILLQRLRERVYPLIPPQDVLIAAAAPAPVRVGSQTWRPEP
CCHHEEEEECCHHCCCHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCCCCCCCCCCCCCC
EVAAVRDRVQAVLYAEGGSLALDNALLQSQQLGEEAKRILQAQLRRQAEEVIDRFQWIVT
HHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVFANPIPAVDLLAIAAINAQMVVELGSLYGCKMNLQQGRELALSLAKTLAGLGLVEGA
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IQLTTGILATVAEVSVVGFLATAPIQAASAGYLTRIAGKSFIEYFQHNQSWGEGGMQAVV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
KAQVQNTQKSGWLKEFVREAARRIFRNGMANPRDP
HHHHHHCHHCHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA