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The map label for this gene is ydcM [C]

Identifier: 86608796

GI number: 86608796

Start: 1384266

End: 1385459

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_1322

Alternate gene names: 86608796

Gene position: 1385459-1384266 (Counterclockwise)

Preceding gene: 86608797

Following gene: 86608795

Centisome position: 45.47

GC content: 56.28

Gene sequence:

>1194_bases
ATGACCCAAGTCCTGACCGTCCCCTGCAAGCTCAAGGTGTCCCAGTCGCAAGCCGCAAAGTTGGATGCGACAATGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACACCAGAAAAAGTAGTCAACGCAGTCAAACTCCAGTCCCTTTGCT
ATTACCAGATTCGCGCTCGGTTTGGCTTGTCCAGTAATCTGGCCCAGCAGGTCTGCAGACGGCTGGCCGGTGCCCGTAAA
GTTGCCCGACAGAAAAACCGTCCGGTCAAAGCGTTCAAGAGAGGCTTTGCGACCTACGATGCCCGTATCTTTTCGTTTCG
CGAGAAAGACTGGACGGTGTCGCTGACCACGGTGGAGGGTCGGGAGCGCTTTGAGCTGGCGATTGGCCGCTACCAGAGAG
AACAGTTGGCAGGCTCCAACCCCAAATCCGCCACTCTGGTCAAGCGTAAAGACGGTTCCTACTCTATTCAGATCTGTGTG
GAAGCGGAGCCATCCCCACCGCAACGCACGGGCAGAGTGCTGGGGGTGGACTTGGGAAGGACAGATATTGCCCATACGTC
AGAGGGGGATAACTGGAATGGACAGCAGTTGAACAAAGTCCGAGACCACTACTCCCGGTTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACCCGCAGTTCGCGGCGCAGATGCCGTCAACTGTTGCAACGGCTGTCTGGCAAGGAGAGGCGCTTT
CAGGCGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCGACAAACAGCGCTATTGCTCTGGAAGA
CTTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAGCTGAGCGCCGCAGAACCAATAACTGGGCATTCT
ACCAGCTTAGGATGTTCGTGGTCTACAAGGCTGCCATTGCCGGAGTACCTGTGGTGCTGGTTCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACATCCATCCCGATCCTACGCAATCCTATCGCAGTGGAAAGAAGTTTAAGTGTGGACA
CTGTGGATGGGAAGGGGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTTGGGGGCTGCTGTAAACCAGCCTAGAG
GTCCGTGGTTGGCTTGCCAACTGCAGGGCTACCGAAAGCCCGCCCTGTACTGCGAAGCAGTCAGGGTCGGGTAG

Upstream 100 bases:

>100_bases
TCGGCCAGCTAGCCTCAGTTTGTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTATGGTAGAACC

Downstream 100 bases:

>100_bases
TTTACGCCCAAGTGTTTTGCTGACCTTCCCCATTGTCAACCCTCGCCACTGCAAAGGCCGCTTCATGCCCGATCCCTCTC
CTGAGCCTGTCATTGCCCTC

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVPVVLVPPAYTS
QTCHRCLHIHPDPTQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGPWLACQLQGYRKPALYCEAVRVG

Sequences:

>Translated_397_residues
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARK
VARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICV
EAEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVPVVLVPPAYTS
QTCHRCLHIHPDPTQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGPWLACQLQGYRKPALYCEAVRVG
>Mature_396_residues
TQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRARFGLSSNLAQQVCRRLAGARKV
ARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVE
AEPSPPQRTGRVLGVDLGRTDIAHTSEGDNWNGQQLNKVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
AWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFVVYKAAIAGVPVVLVPPAYTSQ
TCHRCLHIHPDPTQSYRSGKKFKCGHCGWEGDADLNGANVIALLGAAVNQPRGPWLACQLQGYRKPALYCEAVRVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=231, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44767; Mature: 44636

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCCEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFV
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCEEHHHHHHHH
VYKAAIAGVPVVLVPPAYTSQTCHRCLHIHPDPTQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHHCCCEEEECCCCCHHHHHHHEECCCCCCHHHHCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGPWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC
>Mature Secondary Structure 
TQVLTVPCKLKVSQSQAAKLDATMDAFVQALNWVNQNTPEKVVNAVKLQSLCYYQIRAR
CCEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVARQKNRPVKAFKRGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRKDGSYSIQICVEAEPSPPQRTGRVLGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCHHHCCCEEEEECCC
TDIAHTSEGDNWNGQQLNKVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QAWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRTNNWAFYQLRMFV
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCEEHHHHHHHH
VYKAAIAGVPVVLVPPAYTSQTCHRCLHIHPDPTQSYRSGKKFKCGHCGWEGDADLNGAN
HHHHHHHCCCEEEECCCCCHHHHHHHEECCCCCCHHHHCCCCEECCCCCCCCCCCCCCCH
VIALLGAAVNQPRGPWLACQLQGYRKPALYCEAVRVG
HHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]