Click here to switch to the map view.

The map label for this gene is lytB [H]

Identifier: 86608745

GI number: 86608745

Start: 1327064

End: 1328677

Strand: Reverse

Name: lytB [H]

Synonym: CYB_1269

Alternate gene names: 86608745

Gene position: 1328677-1327064 (Counterclockwise)

Preceding gene: 86608750

Following gene: 86608744

Centisome position: 43.61

GC content: 60.84

Gene sequence:

>1614_bases
TTGCTGACGGCCTTGGCGCTCCATGCCGCCGACGCAACCGGAGTTCGTGAAGAGACCTTGGCCACGGCGGCCACCCCCGA
AAACCCAATCCTGCACATAGGCATTGTGCAACGCTTTGGCCGTTCTGAGACGGATCAAGTGGAGCTGGCGGCGCCGACGG
GATCCCTTCTCACCCTGGAATTCCCTCAAGCAGACGGCAGCACCCAGACCCAGCGAACGCCTCGGGTCAGCATCGGCATT
GTCAATCGCGCCCTGACCACCCCGGAAACCGTATACCGTCTAATCCTCAGCAGCCACAAAAGTTTTGAGAGTGCCGAGGC
CAACGCCAACCATTGGCAGTCTCTGGGCATCAGCACCGAGATCGCCCAGCCGCAAGAATGGCAGGTGTGGGCCAACCGCG
CCTACACCCCGCAACAACTGATCCAGATTCAGCAGTATGCCCAGAAGGAAGGGATCCCCCATGTGCGGCTCGAGGTGCAG
GAGCGACGCGAACGGGCGGAGCTAAGCTGGGTTCATGAACACTTTCGCTACCACCGCACCCGCCTCAGGGTGACCTCCGA
TGCCGGCTATCTACGGGTAAACGACCACTACTATGCCGGATCCATCACCTTTCAGCCCAATGCCTACGGCAGCTACACTG
TGGTCAATGCCGTGCCTCTGGAAACCTATTTGCGGGGGGTAGTTCCCCACGAGGTGGGGCCAGGGGCTCCCTTTGCCGCC
ATGGCTGCCCAGGCGATTTTGGCGCGCACCTACGCCCTCAAGAACCTCCACCGCTTTCAGGTTGACGATTATCAGCTCTG
CGCCAATACCCACTGCCAGGTTTACAAGGGATTGACCGGAACCCACCCGCGGGCTGACGAGGCCATTCGCCAAACCAGTG
GCCTGGTGCTCACCTACAATGGCGAGCTGGTGGATGCTGTCTATTCCTCTACCAATGGCGGCATCTCGGCGGCCTTTGAA
GATGTTTGGGACGGGGATCCGCGCCCCTACCTACGCCCGCAAGCGGATATTGCCCATCGTGCTCCGCAGGGCGAGGAGCG
CCATCAACCGGGTAAGCCCCTGGATTTGCGGCAGGAGAGCAGCTTCCAGGCGTTTTTGGCCCAGCGAGAGGGCTTCAACG
AAGCAGGAGTATCCCGCCTATTCCGCTGGGAGTTCTCCCTATCTTTGGAGGAGCTGAACACCCAGTTGCGGGCCGGCCAA
GACTACCTAGGGATCCCGATGCCCACCTGGAGCAGCATCGCGGGGATGCAGATCCTGGAGCGCTCCGCCAGTGGCCGGGT
GCAGGTGATGCAATTGGACTTGCAGACGGCAGAAGGGATCCGCTCGATTCTTTTGCGCAAGGATCAGGTACGCTTGGCTT
TTCCTCGCCTGTACAGCACCCTGTTTCGGATAGAGCCTCTGAAACAAGGGGAGCGATTGGCAGGCTATCGCTTCATCGGT
GGCGGCTTTGGCCATGGGGTGGGCCTGAGCCAGTATGGCTCCTATACCCTGGCTCGGCAGGGGTTTAACGCGGCACAAAT
CCTCGCTTTCTACTACCCCGGCACCACCTTGGCCCCGCTGGGATCCCTATCCTTGCAGTTGCCTGCCGCCTCAGCAGCCT
ACTCTATCCGCTAG

Upstream 100 bases:

>100_bases
CATGGCCAGTTGTCAGGCTCTCACTGCCAAACCCCGTCGGTTTTTAGGGGCTCCGTCCCGCTGGCGCAAACAGAGCACCC
TCATTTCCGGCTTGGGCCTG

Downstream 100 bases:

>100_bases
AGGTTGGGTGAAAGTTATGGCCGTTCGCGACAGCGGGACAGAGCCTTTAGCTTGTCGGGGTGTGGGGGTAGCTAAGCCCC
GCACTGTACTCGTAGAGTCA

Product: SpoIID/LytB domain-containing protein

Products: NA

Alternate protein names: Cell wall-associated polypeptide CWBP76; CWBP76; Modifier protein of major autolysin [H]

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MLTALALHAADATGVREETLATAATPENPILHIGIVQRFGRSETDQVELAAPTGSLLTLEFPQADGSTQTQRTPRVSIGI
VNRALTTPETVYRLILSSHKSFESAEANANHWQSLGISTEIAQPQEWQVWANRAYTPQQLIQIQQYAQKEGIPHVRLEVQ
ERRERAELSWVHEHFRYHRTRLRVTSDAGYLRVNDHYYAGSITFQPNAYGSYTVVNAVPLETYLRGVVPHEVGPGAPFAA
MAAQAILARTYALKNLHRFQVDDYQLCANTHCQVYKGLTGTHPRADEAIRQTSGLVLTYNGELVDAVYSSTNGGISAAFE
DVWDGDPRPYLRPQADIAHRAPQGEERHQPGKPLDLRQESSFQAFLAQREGFNEAGVSRLFRWEFSLSLEELNTQLRAGQ
DYLGIPMPTWSSIAGMQILERSASGRVQVMQLDLQTAEGIRSILLRKDQVRLAFPRLYSTLFRIEPLKQGERLAGYRFIG
GGFGHGVGLSQYGSYTLARQGFNAAQILAFYYPGTTLAPLGSLSLQLPAASAAYSIR

Sequences:

>Translated_537_residues
MLTALALHAADATGVREETLATAATPENPILHIGIVQRFGRSETDQVELAAPTGSLLTLEFPQADGSTQTQRTPRVSIGI
VNRALTTPETVYRLILSSHKSFESAEANANHWQSLGISTEIAQPQEWQVWANRAYTPQQLIQIQQYAQKEGIPHVRLEVQ
ERRERAELSWVHEHFRYHRTRLRVTSDAGYLRVNDHYYAGSITFQPNAYGSYTVVNAVPLETYLRGVVPHEVGPGAPFAA
MAAQAILARTYALKNLHRFQVDDYQLCANTHCQVYKGLTGTHPRADEAIRQTSGLVLTYNGELVDAVYSSTNGGISAAFE
DVWDGDPRPYLRPQADIAHRAPQGEERHQPGKPLDLRQESSFQAFLAQREGFNEAGVSRLFRWEFSLSLEELNTQLRAGQ
DYLGIPMPTWSSIAGMQILERSASGRVQVMQLDLQTAEGIRSILLRKDQVRLAFPRLYSTLFRIEPLKQGERLAGYRFIG
GGFGHGVGLSQYGSYTLARQGFNAAQILAFYYPGTTLAPLGSLSLQLPAASAAYSIR
>Mature_537_residues
MLTALALHAADATGVREETLATAATPENPILHIGIVQRFGRSETDQVELAAPTGSLLTLEFPQADGSTQTQRTPRVSIGI
VNRALTTPETVYRLILSSHKSFESAEANANHWQSLGISTEIAQPQEWQVWANRAYTPQQLIQIQQYAQKEGIPHVRLEVQ
ERRERAELSWVHEHFRYHRTRLRVTSDAGYLRVNDHYYAGSITFQPNAYGSYTVVNAVPLETYLRGVVPHEVGPGAPFAA
MAAQAILARTYALKNLHRFQVDDYQLCANTHCQVYKGLTGTHPRADEAIRQTSGLVLTYNGELVDAVYSSTNGGISAAFE
DVWDGDPRPYLRPQADIAHRAPQGEERHQPGKPLDLRQESSFQAFLAQREGFNEAGVSRLFRWEFSLSLEELNTQLRAGQ
DYLGIPMPTWSSIAGMQILERSASGRVQVMQLDLQTAEGIRSILLRKDQVRLAFPRLYSTLFRIEPLKQGERLAGYRFIG
GGFGHGVGLSQYGSYTLARQGFNAAQILAFYYPGTTLAPLGSLSLQLPAASAAYSIR

Specific function: Possibly involved in cell wall metabolism during spore formation. Enhances the amidase activity approximately threefold [H]

COG id: COG2385

COG function: function code D; Sporulation protein and related proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein. Secreted, cell wall. Note=Cell wall localization shown in PubMed:11987133 [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007253
- InterPro:   IPR013486
- InterPro:   IPR013693 [H]

Pfam domain/function: PF04122 CW_binding_2; PF08486 SpoIID [H]

EC number: NA

Molecular weight: Translated: 59668; Mature: 59668

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTALALHAADATGVREETLATAATPENPILHIGIVQRFGRSETDQVELAAPTGSLLTLE
CCEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCCEEEECCCCCEEEEE
FPQADGSTQTQRTPRVSIGIVNRALTTPETVYRLILSSHKSFESAEANANHWQSLGISTE
CCCCCCCCCCCCCCCEEEEEHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
IAQPQEWQVWANRAYTPQQLIQIQQYAQKEGIPHVRLEVQERRERAELSWVHEHFRYHRT
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
RLRVTSDAGYLRVNDHYYAGSITFQPNAYGSYTVVNAVPLETYLRGVVPHEVGPGAPFAA
EEEEECCCCEEEECCEEEEEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCHHH
MAAQAILARTYALKNLHRFQVDDYQLCANTHCQVYKGLTGTHPRADEAIRQTSGLVLTYN
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCEEEEEC
GELVDAVYSSTNGGISAAFEDVWDGDPRPYLRPQADIAHRAPQGEERHQPGKPLDLRQES
CCEEEHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCCCCCCC
SFQAFLAQREGFNEAGVSRLFRWEFSLSLEELNTQLRAGQDYLGIPMPTWSSIAGMQILE
HHHHHHHHHCCCCHHHHHHEEEEEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RSASGRVQVMQLDLQTAEGIRSILLRKDQVRLAFPRLYSTLFRIEPLKQGERLAGYRFIG
HCCCCCEEEEEEECHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCEEEEC
GGFGHGVGLSQYGSYTLARQGFNAAQILAFYYPGTTLAPLGSLSLQLPAASAAYSIR
CCCCCCCCHHHCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MLTALALHAADATGVREETLATAATPENPILHIGIVQRFGRSETDQVELAAPTGSLLTLE
CCEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEEHHHHHCCCCCCCEEEECCCCCEEEEE
FPQADGSTQTQRTPRVSIGIVNRALTTPETVYRLILSSHKSFESAEANANHWQSLGISTE
CCCCCCCCCCCCCCCEEEEEHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
IAQPQEWQVWANRAYTPQQLIQIQQYAQKEGIPHVRLEVQERRERAELSWVHEHFRYHRT
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
RLRVTSDAGYLRVNDHYYAGSITFQPNAYGSYTVVNAVPLETYLRGVVPHEVGPGAPFAA
EEEEECCCCEEEECCEEEEEEEEECCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCHHH
MAAQAILARTYALKNLHRFQVDDYQLCANTHCQVYKGLTGTHPRADEAIRQTSGLVLTYN
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCEEEEEC
GELVDAVYSSTNGGISAAFEDVWDGDPRPYLRPQADIAHRAPQGEERHQPGKPLDLRQES
CCEEEHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCCCCCCC
SFQAFLAQREGFNEAGVSRLFRWEFSLSLEELNTQLRAGQDYLGIPMPTWSSIAGMQILE
HHHHHHHHHCCCCHHHHHHEEEEEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RSASGRVQVMQLDLQTAEGIRSILLRKDQVRLAFPRLYSTLFRIEPLKQGERLAGYRFIG
HCCCCCEEEEEEECHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCEEEEC
GGFGHGVGLSQYGSYTLARQGFNAAQILAFYYPGTTLAPLGSLSLQLPAASAAYSIR
CCCCCCCCHHHCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1357079; 1356138; 9384377 [H]