| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is dxr [H]
Identifier: 86608709
GI number: 86608709
Start: 1274682
End: 1275860
Strand: Direct
Name: dxr [H]
Synonym: CYB_1233
Alternate gene names: 86608709
Gene position: 1274682-1275860 (Clockwise)
Preceding gene: 86608708
Following gene: 86608710
Centisome position: 41.84
GC content: 63.02
Gene sequence:
>1179_bases ATGCAAGCCATCACCTTGCTCGGCTCCACCGGCTCGATTGGCACCCAAACTCTGGACTTGGTGGCCCAGTATCCAGAGCG TTTTCAGGTTGTTGGCCTGACCAGCTACAGCAACGTTGCCCTCTTGGCCGAGCAGGTGCGGCGGTTTCGGCCCCAGATGG TTGCCATTGGCCGGGAGGAGCTGCTGCCGGAGCTGCGGTCGCTGCTGACGGGGATCCGACCGCTGCCGGAGTTGGTGGCC GGAACGGAGGGGCTGTGTCAGGTGGCGGCTCACCCGGCGGCCCAGCGGGTGGTGACGGGGATCGTCGGCTGCGCCGGTTT ATTGCCAACCCTGGCGGCCATCCGTGCCGGCAAAGACATTGCCCTGGCCAACAAAGAAACCCTGGTGGCAGGGGGGCCGG TGGTGCTGCCCCTGGTGCGCGAGTACGGGGTGAACCTGATCCCCGTCGATTCTGAGCATTCGGCCATTTTCCAATGTTTG CAGGGGGTGCCGGCGGGATCCCTGCGAAGAATCCTGTTGACTGCCTCGGGTGGCGCCTTTCGGGATTGGCCTGCCGAAAA ATTGGATCAGGTCACCCTGGCCGATGCCCTCAAGCATCCCAATTGGGTGATGGGGCGCAAAATCACCATCGACTCGGCTA CCCTAATGAACAAGGGCCTGGAGGTGATCGAGGCCCACTGGCTCTTCGGCCTGGACTACGACCACATCGACATCCTCATC CACCCGCAGAGCATTGTCCACTCCCTGATCGAGCTGGCCGATACCTCGGTTCTGGCCCAGTTGGGCTGGCCGGACATGCA CCTGCCCATCCTCTACGGCCTCAGTTGGCCGGAACGCCTGGCCACCCCCTGGGATCCCCTCGATTTGGTCAAGCTGGGAT CCCTCACCTTTAAGGCTCCGGATCACCGCAAGTATCCTTGCATGGAGTTGGCCTATGCCGCCGGGCGGAGGGGGGGGACG CTGCCGGCAGTGTTGAATGCAGCCAACGAAGCGGCGGTAGCCCTGTTCTTGCAGGAGCGCATCCGTTTTTTGGATATTCC CCGTCTCTTGGAGCGGGTTTGTGAGCGGCATCAAGTCATTGCCGATCCCAGCCTGGAGGACATTTTGCAGGCAGATGCCT GGGCACGGCGGGAAACGGCGCAACTGGCCCAGCAAGCCCCGGCTCAGGTTCTGGCCTGA
Upstream 100 bases:
>100_bases GGCCGTTCGCAATAGCGGGACGGAGTCCTTGGGCAAGTTGCGCGAGGGGAAGTCTGCGTTGAGAGGACGTCACGCTCTTT CAGGGGTAAAGGGATCCTTT
Downstream 100 bases:
>100_bases TCCCTACCGGGGGGATCCGGCTGAACGCTAGAGTGGAAGAGGATGCAGGGAGCAAGTGAGTGACCGGATCCCATCTCCGA CAATTGGCCCATTATCTGCG
Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Products: NA
Alternate protein names: DXP reductoisomerase; 1-deoxyxylulose-5-phosphate reductoisomerase; 2-C-methyl-D-erythritol 4-phosphate synthase [H]
Number of amino acids: Translated: 392; Mature: 392
Protein sequence:
>392_residues MQAITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREELLPELRSLLTGIRPLPELVA GTEGLCQVAAHPAAQRVVTGIVGCAGLLPTLAAIRAGKDIALANKETLVAGGPVVLPLVREYGVNLIPVDSEHSAIFQCL QGVPAGSLRRILLTASGGAFRDWPAEKLDQVTLADALKHPNWVMGRKITIDSATLMNKGLEVIEAHWLFGLDYDHIDILI HPQSIVHSLIELADTSVLAQLGWPDMHLPILYGLSWPERLATPWDPLDLVKLGSLTFKAPDHRKYPCMELAYAAGRRGGT LPAVLNAANEAAVALFLQERIRFLDIPRLLERVCERHQVIADPSLEDILQADAWARRETAQLAQQAPAQVLA
Sequences:
>Translated_392_residues MQAITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREELLPELRSLLTGIRPLPELVA GTEGLCQVAAHPAAQRVVTGIVGCAGLLPTLAAIRAGKDIALANKETLVAGGPVVLPLVREYGVNLIPVDSEHSAIFQCL QGVPAGSLRRILLTASGGAFRDWPAEKLDQVTLADALKHPNWVMGRKITIDSATLMNKGLEVIEAHWLFGLDYDHIDILI HPQSIVHSLIELADTSVLAQLGWPDMHLPILYGLSWPERLATPWDPLDLVKLGSLTFKAPDHRKYPCMELAYAAGRRGGT LPAVLNAANEAAVALFLQERIRFLDIPRLLERVCERHQVIADPSLEDILQADAWARRETAQLAQQAPAQVLA >Mature_392_residues MQAITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREELLPELRSLLTGIRPLPELVA GTEGLCQVAAHPAAQRVVTGIVGCAGLLPTLAAIRAGKDIALANKETLVAGGPVVLPLVREYGVNLIPVDSEHSAIFQCL QGVPAGSLRRILLTASGGAFRDWPAEKLDQVTLADALKHPNWVMGRKITIDSATLMNKGLEVIEAHWLFGLDYDHIDILI HPQSIVHSLIELADTSVLAQLGWPDMHLPILYGLSWPERLATPWDPLDLVKLGSLTFKAPDHRKYPCMELAYAAGRRGGT LPAVLNAANEAAVALFLQERIRFLDIPRLLERVCERHQVIADPSLEDILQADAWARRETAQLAQQAPAQVLA
Specific function: Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP) [H]
COG id: COG0743
COG function: function code I; 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DXR family [H]
Homologues:
Organism=Escherichia coli, GI1786369, Length=386, Percent_Identity=46.1139896373057, Blast_Score=328, Evalue=5e-91,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003821 - InterPro: IPR013644 - InterPro: IPR013512 - InterPro: IPR016040 [H]
Pfam domain/function: PF08436 DXP_redisom_C; PF02670 DXP_reductoisom [H]
EC number: =1.1.1.267 [H]
Molecular weight: Translated: 42668; Mature: 42668
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREE CCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHCCHHH LLPELRSLLTGIRPLPELVAGTEGLCQVAAHPAAQRVVTGIVGCAGLLPTLAAIRAGKDI HHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE ALANKETLVAGGPVVLPLVREYGVNLIPVDSEHSAIFQCLQGVPAGSLRRILLTASGGAF EECCCCEEEECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCC RDWPAEKLDQVTLADALKHPNWVMGRKITIDSATLMNKGLEVIEAHWLFGLDYDHIDILI CCCCHHHHHHHHHHHHHCCCCEECCCEEEECHHHHHHHCHHHHHHHHHEECCCCCEEEEE HPQSIVHSLIELADTSVLAQLGWPDMHLPILYGLSWPERLATPWDPLDLVKLGSLTFKAP CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCCHHHHCCCCCCHHHHHHCCEEEECC DHRKYPCMELAYAAGRRGGTLPAVLNAANEAAVALFLQERIRFLDIPRLLERVCERHQVI CCCCCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC ADPSLEDILQADAWARRETAQLAQQAPAQVLA CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC >Mature Secondary Structure MQAITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREE CCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCHHHHCCHHH LLPELRSLLTGIRPLPELVAGTEGLCQVAAHPAAQRVVTGIVGCAGLLPTLAAIRAGKDI HHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE ALANKETLVAGGPVVLPLVREYGVNLIPVDSEHSAIFQCLQGVPAGSLRRILLTASGGAF EECCCCEEEECCCHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEECCCCC RDWPAEKLDQVTLADALKHPNWVMGRKITIDSATLMNKGLEVIEAHWLFGLDYDHIDILI CCCCHHHHHHHHHHHHHCCCCEECCCEEEECHHHHHHHCHHHHHHHHHEECCCCCEEEEE HPQSIVHSLIELADTSVLAQLGWPDMHLPILYGLSWPERLATPWDPLDLVKLGSLTFKAP CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCCCHHHHCCCCCCHHHHHHCCEEEECC DHRKYPCMELAYAAGRRGGTLPAVLNAANEAAVALFLQERIRFLDIPRLLERVCERHQVI CCCCCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC ADPSLEDILQADAWARRETAQLAQQAPAQVLA CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA