| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is glmS [H]
Identifier: 86608566
GI number: 86608566
Start: 1123828
End: 1125675
Strand: Direct
Name: glmS [H]
Synonym: CYB_1089
Alternate gene names: 86608566
Gene position: 1123828-1125675 (Clockwise)
Preceding gene: 86608565
Following gene: 86608570
Centisome position: 36.89
GC content: 61.47
Gene sequence:
>1848_bases ATGTGTGGCATTGTCGGCTACGTGGGTTTTCAGTGGGCTGCCCCCATCCTGTTGGAGGGCCTGCGCACCTTGGAGTATCG GGGCTATGATTCTGCCGGCATCGCCACGGTGGATCCCGAAGAGGGATTGAGGATTGTTCGCGCCACCGGCAAGCTGCACA ACCTGCTGGTGAAGCTGACGGCCAACATGCCCACGGCCAAGGTAGGGATCGGACATACCCGCTGGGCCACCCACGGCGGC GTGACCGAAGAAAATGCTCACCCCCACTGCGACGAGCGCGGGCGCATTGTGGTGATCCAAAACGGCATTGTGGAAAACTA CCTGGAGCTAAAGGAGCGTCTCCTGGAGCGGGGGATCCCATTTCGCTCCCAAACCGATACGGAAGTGATCGCCCAACTGC TCGGCCTCTATACAGAAGAGCTGGGCTCCTTTGAGGCGGCCTTTGGCCAGGTCATGGGGCAACTGCGGGGGGGAAACGCC GTGGTGGCTCTGGATCGGGAGGCGCCGGATCGGCTGATCGCAGCCCGTTTGGGCAATGCCGGAGCCGTGGTGGTGGGAGA GGGAGAAGGAGAAAACTTCGTGGCCTCCGATCTGCCTGCCATTGTCCGCCATACCCGCAAGGTGGTGTTCTTAGAAGATG GGGAAATGGCGGTTCTCACGGAGTCTCAAGTGCGCTACCTGCGCATTACCGGCGAGGAGCTGCGCAAATCCAGCATCACC GTGGCCTGGGATCCCGTCTCAGCCGCCAAGGGAGGCTACAAGCACTTCATGCAAAAGGAGATCTTTGAGCAGCCCCGCAC CACCACCGATACGCTACGGGGGCGGGTGGATCTGGAACAGGGCCGGGTGACACTGGAGGGGCTAACGCTTTCTGAAGCGC AACTGGCCCACATTGAGCACATCCACGCCGTAGCCTGTGGTACTGCCTGGCACGCCTGCTGGGTGCTCAAGTACTTCATC GAGAGCTTGGCCCGTACCCCTGTAGAGGTGGATTACGCCTCTGAGTTTCGCTACCGCCAGCCGGTGTTGCGCCCCAACCA CCTGTTGCTGGCCTTAACCCAGTCGGGAGAAACCGTCGATACGCTGGCAGCCATGAGCGAGGCCCGCACCCAAGGGATCC CGACTCTGGCGATTGTCAACGCCATCGGATCCCAGGCCAGCCGTCTGGCGGATGCCGGAGTCCTCTACATCCATGCCGGG CCGGAGATTGCCGTGGCTTCCACCAAAGTGTTTACTGGCATGTTGGTGGCGGGGTATTTGCTGGCCCTGCAACTGGCCCA AGCCAAAGGGATCCTCAGCCCGGCCCAGATCCAAGCCCACCTGCAAGCCTTGATTGAGCTGCCGGGCAAGATCAGCCTGA TGCTGAAGGACGCCGCCCTCTACGACCAACTGGCGGAGCAGTACCATCATGTTGCCAACATGCTCTACCTGGGCCGCTGG GTTAACGCCCCGATTGCCTTGGAAGGAGCCTTGAAGATGAAAGAGGTGAGCTACATCCACGCCGAAGGCTACCCGGCAGG CGAGATGAAGCATGGCCCTATTGCCCTCATCGACGAGCGGGTGCCGGTGGTGTGCATTGCCACCCGGGATCCCGTCTACG AAAAAATGCTCTCCAACATCGAACAGGTGCGGGCGCGGGGGGGACGGGTGATCGCCCTCATCAACCCCGAAGACACCCAG GTGCGGGAGAAAGCCGACCACATCATCGAGGTGCCCAGCACGACACCCCTGTTGTCGGCGGTTCTGAACGTGATCCCCCT GCAGTTGTTCGCCTACGCCATGGCTTTGCGCCGCGGAGCCGATGTGGATCAGCCGCGCAACTTGGCCAAGTCGGTAACGG TGGAGTAA
Upstream 100 bases:
>100_bases AAGCCGTTGAAGGGATCCCCAACCTGGGGTAGGCTTTGCGGATAAGGTGTTGCCTGTATTGCTACGCAACGCTGGCGCGA CTGAGGTTGAGGTGTGAGGA
Downstream 100 bases:
>100_bases CGGCTGTTGCCCTTGCCGCCCCTGGCCTCTGGTTTTTGCAAAATCGGGCAGATCACCTCTTTTTCATCAGCAGCCGCAGG GGTGATTTGCCAATCGGAGA
Product: glucosamine--fructose-6-phosphate aminotransferase, isomerizing
Products: NA
Alternate protein names: D-fructose-6-phosphate amidotransferase; GFAT; Glucosamine-6-phosphate synthase; Hexosephosphate aminotransferase; L-glutamine-D-fructose-6-phosphate amidotransferase [H]
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MCGIVGYVGFQWAAPILLEGLRTLEYRGYDSAGIATVDPEEGLRIVRATGKLHNLLVKLTANMPTAKVGIGHTRWATHGG VTEENAHPHCDERGRIVVIQNGIVENYLELKERLLERGIPFRSQTDTEVIAQLLGLYTEELGSFEAAFGQVMGQLRGGNA VVALDREAPDRLIAARLGNAGAVVVGEGEGENFVASDLPAIVRHTRKVVFLEDGEMAVLTESQVRYLRITGEELRKSSIT VAWDPVSAAKGGYKHFMQKEIFEQPRTTTDTLRGRVDLEQGRVTLEGLTLSEAQLAHIEHIHAVACGTAWHACWVLKYFI ESLARTPVEVDYASEFRYRQPVLRPNHLLLALTQSGETVDTLAAMSEARTQGIPTLAIVNAIGSQASRLADAGVLYIHAG PEIAVASTKVFTGMLVAGYLLALQLAQAKGILSPAQIQAHLQALIELPGKISLMLKDAALYDQLAEQYHHVANMLYLGRW VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERVPVVCIATRDPVYEKMLSNIEQVRARGGRVIALINPEDTQ VREKADHIIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGADVDQPRNLAKSVTVE
Sequences:
>Translated_615_residues MCGIVGYVGFQWAAPILLEGLRTLEYRGYDSAGIATVDPEEGLRIVRATGKLHNLLVKLTANMPTAKVGIGHTRWATHGG VTEENAHPHCDERGRIVVIQNGIVENYLELKERLLERGIPFRSQTDTEVIAQLLGLYTEELGSFEAAFGQVMGQLRGGNA VVALDREAPDRLIAARLGNAGAVVVGEGEGENFVASDLPAIVRHTRKVVFLEDGEMAVLTESQVRYLRITGEELRKSSIT VAWDPVSAAKGGYKHFMQKEIFEQPRTTTDTLRGRVDLEQGRVTLEGLTLSEAQLAHIEHIHAVACGTAWHACWVLKYFI ESLARTPVEVDYASEFRYRQPVLRPNHLLLALTQSGETVDTLAAMSEARTQGIPTLAIVNAIGSQASRLADAGVLYIHAG PEIAVASTKVFTGMLVAGYLLALQLAQAKGILSPAQIQAHLQALIELPGKISLMLKDAALYDQLAEQYHHVANMLYLGRW VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERVPVVCIATRDPVYEKMLSNIEQVRARGGRVIALINPEDTQ VREKADHIIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGADVDQPRNLAKSVTVE >Mature_615_residues MCGIVGYVGFQWAAPILLEGLRTLEYRGYDSAGIATVDPEEGLRIVRATGKLHNLLVKLTANMPTAKVGIGHTRWATHGG VTEENAHPHCDERGRIVVIQNGIVENYLELKERLLERGIPFRSQTDTEVIAQLLGLYTEELGSFEAAFGQVMGQLRGGNA VVALDREAPDRLIAARLGNAGAVVVGEGEGENFVASDLPAIVRHTRKVVFLEDGEMAVLTESQVRYLRITGEELRKSSIT VAWDPVSAAKGGYKHFMQKEIFEQPRTTTDTLRGRVDLEQGRVTLEGLTLSEAQLAHIEHIHAVACGTAWHACWVLKYFI ESLARTPVEVDYASEFRYRQPVLRPNHLLLALTQSGETVDTLAAMSEARTQGIPTLAIVNAIGSQASRLADAGVLYIHAG PEIAVASTKVFTGMLVAGYLLALQLAQAKGILSPAQIQAHLQALIELPGKISLMLKDAALYDQLAEQYHHVANMLYLGRW VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERVPVVCIATRDPVYEKMLSNIEQVRARGGRVIALINPEDTQ VREKADHIIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGADVDQPRNLAKSVTVE
Specific function: Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source [H]
COG id: COG0449
COG function: function code M; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 SIS domains [H]
Homologues:
Organism=Homo sapiens, GI4826742, Length=688, Percent_Identity=35.9011627906977, Blast_Score=392, Evalue=1e-109, Organism=Homo sapiens, GI205277386, Length=684, Percent_Identity=35.3801169590643, Blast_Score=384, Evalue=1e-106, Organism=Homo sapiens, GI29570798, Length=149, Percent_Identity=33.5570469798658, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1790167, Length=618, Percent_Identity=45.6310679611651, Blast_Score=494, Evalue=1e-141, Organism=Escherichia coli, GI1788651, Length=176, Percent_Identity=28.9772727272727, Blast_Score=74, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17539970, Length=721, Percent_Identity=35.7836338418863, Blast_Score=378, Evalue=1e-105, Organism=Caenorhabditis elegans, GI17532899, Length=721, Percent_Identity=35.0901525658807, Blast_Score=374, Evalue=1e-104, Organism=Caenorhabditis elegans, GI17532897, Length=735, Percent_Identity=33.3333333333333, Blast_Score=340, Evalue=1e-93, Organism=Saccharomyces cerevisiae, GI6322745, Length=434, Percent_Identity=41.4746543778802, Blast_Score=320, Evalue=3e-88, Organism=Saccharomyces cerevisiae, GI6323731, Length=430, Percent_Identity=32.5581395348837, Blast_Score=221, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6323730, Length=198, Percent_Identity=38.8888888888889, Blast_Score=124, Evalue=6e-29, Organism=Drosophila melanogaster, GI21357745, Length=686, Percent_Identity=35.4227405247813, Blast_Score=389, Evalue=1e-108,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000583 - InterPro: IPR017932 - InterPro: IPR005855 - InterPro: IPR001347 [H]
Pfam domain/function: PF00310 GATase_2; PF01380 SIS [H]
EC number: =2.6.1.16 [H]
Molecular weight: Translated: 67168; Mature: 67168
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGIVGYVGFQWAAPILLEGLRTLEYRGYDSAGIATVDPEEGLRIVRATGKLHNLLVKLT CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCEEEEHHHHHHHHHHHEE ANMPTAKVGIGHTRWATHGGVTEENAHPHCDERGRIVVIQNGIVENYLELKERLLERGIP CCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC FRSQTDTEVIAQLLGLYTEELGSFEAAFGQVMGQLRGGNAVVALDREAPDRLIAARLGNA CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCC GAVVVGEGEGENFVASDLPAIVRHTRKVVFLEDGEMAVLTESQVRYLRITGEELRKSSIT CEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCEEEEEEECHHHHCCCCE VAWDPVSAAKGGYKHFMQKEIFEQPRTTTDTLRGRVDLEQGRVTLEGLTLSEAQLAHIEH EEECCHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCEECCCCEEEEEEEEECHHHHHHHHH IHAVACGTAWHACWVLKYFIESLARTPVEVDYASEFRYRQPVLRPNHLLLALTQSGETVD HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCCEEEEEECCCCHHH TLAAMSEARTQGIPTLAIVNAIGSQASRLADAGVLYIHAGPEIAVASTKVFTGMLVAGYL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHHHHH LALQLAQAKGILSPAQIQAHLQALIELPGKISLMLKDAALYDQLAEQYHHVANMLYLGRW HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERVPVVCIATRDPVYEKMLSNI CCCCEEEECCHHHHHEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHH EQVRARGGRVIALINPEDTQVREKADHIIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGA HHHHHCCCEEEEEECCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC DVDQPRNLAKSVTVE CCCCHHHHHHHCCCC >Mature Secondary Structure MCGIVGYVGFQWAAPILLEGLRTLEYRGYDSAGIATVDPEEGLRIVRATGKLHNLLVKLT CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHCCEEEEHHHHHHHHHHHEE ANMPTAKVGIGHTRWATHGGVTEENAHPHCDERGRIVVIQNGIVENYLELKERLLERGIP CCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC FRSQTDTEVIAQLLGLYTEELGSFEAAFGQVMGQLRGGNAVVALDREAPDRLIAARLGNA CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCC GAVVVGEGEGENFVASDLPAIVRHTRKVVFLEDGEMAVLTESQVRYLRITGEELRKSSIT CEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCEEEEEEECHHHHCCCCE VAWDPVSAAKGGYKHFMQKEIFEQPRTTTDTLRGRVDLEQGRVTLEGLTLSEAQLAHIEH EEECCHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCEECCCCEEEEEEEEECHHHHHHHHH IHAVACGTAWHACWVLKYFIESLARTPVEVDYASEFRYRQPVLRPNHLLLALTQSGETVD HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCCEEEEEECCCCHHH TLAAMSEARTQGIPTLAIVNAIGSQASRLADAGVLYIHAGPEIAVASTKVFTGMLVAGYL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHHHHH LALQLAQAKGILSPAQIQAHLQALIELPGKISLMLKDAALYDQLAEQYHHVANMLYLGRW HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERVPVVCIATRDPVYEKMLSNI CCCCEEEECCHHHHHEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHH EQVRARGGRVIALINPEDTQVREKADHIIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGA HHHHHCCCEEEEEECCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC DVDQPRNLAKSVTVE CCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA