Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608261

Identifier: 86608261

GI number: 86608261

Start: 799726

End: 800742

Strand: Reverse

Name: 86608261

Synonym: CYB_0777

Alternate gene names: NA

Gene position: 800742-799726 (Counterclockwise)

Preceding gene: 86608262

Following gene: 86608260

Centisome position: 26.28

GC content: 61.65

Gene sequence:

>1017_bases
ATGCTCACCGTTCTCGATCATCTACCGGATCAACTGCTGGATCTAGAGGCCCATCAGCTTTACGACCGATTGGGTGGGCC
AACCCTCATCCATCTGCCGGGACGACGGGATCCCGCCCTGTTTGTGTCCGTCCTGCTGCACGGCAACGAAACCACCGGCT
GGCAGGCGGTGCGACAGCTTCTCCGCCGCTACGCCCAGCGGGAATTGCCCCGTTCTCTTTCCCTTTTCATTGGCAACGTG
CAGGCTGCCCGCCACCGGCAACGGCGGCTGGATGGCCAACCGGACTACAACCGCATTTGGGGCCCCGGCTCCACCCCCGA
GCACGCTATGGCCCAGGCCGTCCTGCAGCAAATGCAGCAGCGGGGCGTTTTTGCCAGCGTCGATATCCACAACAACACGG
GCACCAACCCCCACTACGCCTGTGTCAATCACCTGGATGCCCCTACCCTGCACCTGGCCACCTTGTTTGGGCGCACCGTC
CTCTATTTCACCAGGCCAGAAGGGGTACAGAGCATGGCCTTCGGGCGCTTCTGCCCGGCGGTGACCCTGGAATGCGGCAA
GCCGGATCAACCCCACGGCACCCAGCATGCCTACGAATTTCTGGAAGCCTGCCTGCACCTGTCGGCGATCCCGCAGCGCC
CTGTCTTCCGCCAAGATATCGACCTGTTCCACAGCGTCGCCATTGTCAAAATCCCGGATCAGGTGAGCTTCAGCTTTGGG
GAAGAGGATGGCAACCAAGAGGGATCCCCCTCCCACATCCGCTTCCCGCCGGATTTGGATCTCCTCAATTTTCGGGAGCT
TCCCCCCCACACCCCCATTGGCTGGACGAACAACGGCTTCCACCTGGAGGTGCAAGACGAGCAGGGCCAAAATGTGGCGG
ATCGCTTTTTCTATGCCTGCAACGGAGAAATTCGCACCAGCGTGCCCATCATGCCGGGCATGCTCACCCTCAACAGCCGC
ATCATCCGCCAAGACTGCCTCTGCTACCTGATGGAGCGCTACCCCCTGGTGGGCTGA

Upstream 100 bases:

>100_bases
CATTCGCGACCAAGGACTTCGTTGGACTTCTGCTCCCTCCTACCCCAGGGAGAGAGGCCAGAAGCCAGAAGTTTGAGTCG
AGCCTCTTAGCCCAAACAGT

Downstream 100 bases:

>100_bases
GCCGGGCTGCCAATTTCCCCGAGGGGATCCCCAAACCAGAACAGGTGGTGCTCCCCACCCCTGCAATAACAGACTCCCCG
CTGGCCGCTGTACCCGTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MLTVLDHLPDQLLDLEAHQLYDRLGGPTLIHLPGRRDPALFVSVLLHGNETTGWQAVRQLLRRYAQRELPRSLSLFIGNV
QAARHRQRRLDGQPDYNRIWGPGSTPEHAMAQAVLQQMQQRGVFASVDIHNNTGTNPHYACVNHLDAPTLHLATLFGRTV
LYFTRPEGVQSMAFGRFCPAVTLECGKPDQPHGTQHAYEFLEACLHLSAIPQRPVFRQDIDLFHSVAIVKIPDQVSFSFG
EEDGNQEGSPSHIRFPPDLDLLNFRELPPHTPIGWTNNGFHLEVQDEQGQNVADRFFYACNGEIRTSVPIMPGMLTLNSR
IIRQDCLCYLMERYPLVG

Sequences:

>Translated_338_residues
MLTVLDHLPDQLLDLEAHQLYDRLGGPTLIHLPGRRDPALFVSVLLHGNETTGWQAVRQLLRRYAQRELPRSLSLFIGNV
QAARHRQRRLDGQPDYNRIWGPGSTPEHAMAQAVLQQMQQRGVFASVDIHNNTGTNPHYACVNHLDAPTLHLATLFGRTV
LYFTRPEGVQSMAFGRFCPAVTLECGKPDQPHGTQHAYEFLEACLHLSAIPQRPVFRQDIDLFHSVAIVKIPDQVSFSFG
EEDGNQEGSPSHIRFPPDLDLLNFRELPPHTPIGWTNNGFHLEVQDEQGQNVADRFFYACNGEIRTSVPIMPGMLTLNSR
IIRQDCLCYLMERYPLVG
>Mature_338_residues
MLTVLDHLPDQLLDLEAHQLYDRLGGPTLIHLPGRRDPALFVSVLLHGNETTGWQAVRQLLRRYAQRELPRSLSLFIGNV
QAARHRQRRLDGQPDYNRIWGPGSTPEHAMAQAVLQQMQQRGVFASVDIHNNTGTNPHYACVNHLDAPTLHLATLFGRTV
LYFTRPEGVQSMAFGRFCPAVTLECGKPDQPHGTQHAYEFLEACLHLSAIPQRPVFRQDIDLFHSVAIVKIPDQVSFSFG
EEDGNQEGSPSHIRFPPDLDLLNFRELPPHTPIGWTNNGFHLEVQDEQGQNVADRFFYACNGEIRTSVPIMPGMLTLNSR
IIRQDCLCYLMERYPLVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38237; Mature: 38237

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVLDHLPDQLLDLEAHQLYDRLGGPTLIHLPGRRDPALFVSVLLHGNETTGWQAVRQL
CCCHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHEEEEHHCCCCCCHHHHHHHH
LRRYAQRELPRSLSLFIGNVQAARHRQRRLDGQPDYNRIWGPGSTPEHAMAQAVLQQMQQ
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RGVFASVDIHNNTGTNPHYACVNHLDAPTLHLATLFGRTVLYFTRPEGVQSMAFGRFCPA
CCCEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCE
VTLECGKPDQPHGTQHAYEFLEACLHLSAIPQRPVFRQDIDLFHSVAIVKIPDQVSFSFG
EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCEEEEECCCHHCCCCC
EEDGNQEGSPSHIRFPPDLDLLNFRELPPHTPIGWTNNGFHLEVQDEQGQNVADRFFYAC
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHEEEEE
NGEIRTSVPIMPGMLTLNSRIIRQDCLCYLMERYPLVG
CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLTVLDHLPDQLLDLEAHQLYDRLGGPTLIHLPGRRDPALFVSVLLHGNETTGWQAVRQL
CCCHHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHEEEEHHCCCCCCHHHHHHHH
LRRYAQRELPRSLSLFIGNVQAARHRQRRLDGQPDYNRIWGPGSTPEHAMAQAVLQQMQQ
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RGVFASVDIHNNTGTNPHYACVNHLDAPTLHLATLFGRTVLYFTRPEGVQSMAFGRFCPA
CCCEEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCE
VTLECGKPDQPHGTQHAYEFLEACLHLSAIPQRPVFRQDIDLFHSVAIVKIPDQVSFSFG
EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCEEEEECCCHHCCCCC
EEDGNQEGSPSHIRFPPDLDLLNFRELPPHTPIGWTNNGFHLEVQDEQGQNVADRFFYAC
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHEEEEE
NGEIRTSVPIMPGMLTLNSRIIRQDCLCYLMERYPLVG
CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA