BacMap

Definition	Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession	NC_007776
Length	3,046,682

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The map label for this gene is cbpA [C]

Identifier: 86608229

GI number: 86608229

Start: 768309

End: 769244

Strand: Reverse

Name: cbpA [C]

Synonym: CYB_0745

Alternate gene names: 86608229

Gene position: 769244-768309 (Counterclockwise)

Preceding gene: 86608230

Following gene: 86608228

Centisome position: 25.25

GC content: 62.18

Gene sequence:

>936_bases
ATGGCTGCGAGTGACTTCAAGGATTATTACAAGATCCTGGGCGTCAGCAGAGATGCCTCTGCCGAGGAAATCAAGCGCGT
CTATCGCAAGCTGGCCCGCCAGTATCACCCCGACGTGAACCCCGGCAACAAGGCAGCAGAGGAACGCTTTAAGGAGATCA
ACGAAGCCTACGAGGTGCTCTCTGATCCGGAAAAGCGGCGGCGCTACGACCAGTTTGGGCAGTACTGGCAGCGGGTGGGT
ACTGGTTCTGCTGCTGGAATGCCGGGCATGGAGGGCTTCGCCCAATACGCCAGCTTCGAGGAGTTTATCAACGAGCTGCT
GGGCCGTATGGGATCCCGCCGCAGCGGGTTCCAGGGCTTCGCCGGCGGCTTTGGGCCGTTTGTTTCGGTGGATTTGCCGG
GGCAGGATGTGGAGGGCACTCTGGGTCTCAGCTGGGCAGAAGCTTTCCACGGCACCCAGAAACGGCTGAACCTAGATGGA
GAAACGCTAACCATCCGCATTCCCCCCGGCGCTAAGCCGGGCAGTCGCATCCGCGTCAAGGGCAAAGGCCAGGTCAGCCC
CTTTGGCGGGCCAAGAGGGGATCTCTACCTCACTTTGGAGCTGCCCCCCCATCCCTTCTTCCGCTTTGACGGAGACAACC
TGCTCTGCGAGCTGCCCATTACTCCTGACGAGGCGGCTTTGGGAGGGACGGCGGAAGTTCCCACCCCTACGGGTCGCGTG
CAACTGAGGATCCCTGCCGGGGTAGACAGCGGCCAAACCCTGCGGCTGCGCGGCCAAGGCTGGCGGGATCCCCAAGGCCA
GCGGAGCGACCTGCTGGTGCGGCTGAAGGTGGTGGCACCCAAATCCCTTTCCCAGACCGAACGGGATCTCTACGAAAAGC
TGCGGCAAAGCCGTAGCTGGGATCCCCGCGCCCACTTGCAGGAGGTGAGTCTATGA

Upstream 100 bases:

>100_bases
CTGTACGTGTTCTGGGTCTGCTCCAATTTTTTTTTAGCTGCAACCTTATATCCTGAGAATAGCCCGAAAAACTCTAACCT
AACCTTGCAGGGGTGAGCCT

Downstream 100 bases:

>100_bases
GTTTGGCCATTGTGCGGGTAGAAGAACGGCTCTATACCTTCGAGCAGGCCACGGAACTGCTGGGGATCCCTCCCCACCTG
CTGGAATGGCTGCTGGCCCA

Product: DnaJ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MAASDFKDYYKILGVSRDASAEEIKRVYRKLARQYHPDVNPGNKAAEERFKEINEAYEVLSDPEKRRRYDQFGQYWQRVG
TGSAAGMPGMEGFAQYASFEEFINELLGRMGSRRSGFQGFAGGFGPFVSVDLPGQDVEGTLGLSWAEAFHGTQKRLNLDG
ETLTIRIPPGAKPGSRIRVKGKGQVSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAALGGTAEVPTPTGRV
QLRIPAGVDSGQTLRLRGQGWRDPQGQRSDLLVRLKVVAPKSLSQTERDLYEKLRQSRSWDPRAHLQEVSL

Sequences:

>Translated_311_residues
MAASDFKDYYKILGVSRDASAEEIKRVYRKLARQYHPDVNPGNKAAEERFKEINEAYEVLSDPEKRRRYDQFGQYWQRVG
TGSAAGMPGMEGFAQYASFEEFINELLGRMGSRRSGFQGFAGGFGPFVSVDLPGQDVEGTLGLSWAEAFHGTQKRLNLDG
ETLTIRIPPGAKPGSRIRVKGKGQVSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAALGGTAEVPTPTGRV
QLRIPAGVDSGQTLRLRGQGWRDPQGQRSDLLVRLKVVAPKSLSQTERDLYEKLRQSRSWDPRAHLQEVSL
>Mature_310_residues
AASDFKDYYKILGVSRDASAEEIKRVYRKLARQYHPDVNPGNKAAEERFKEINEAYEVLSDPEKRRRYDQFGQYWQRVGT
GSAAGMPGMEGFAQYASFEEFINELLGRMGSRRSGFQGFAGGFGPFVSVDLPGQDVEGTLGLSWAEAFHGTQKRLNLDGE
TLTIRIPPGAKPGSRIRVKGKGQVSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAALGGTAEVPTPTGRVQ
LRIPAGVDSGQTLRLRGQGWRDPQGQRSDLLVRLKVVAPKSLSQTERDLYEKLRQSRSWDPRAHLQEVSL

Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI201862518, Length=344, Percent_Identity=36.046511627907, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI201862587, Length=344, Percent_Identity=36.046511627907, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI56549115, Length=344, Percent_Identity=36.046511627907, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI5453690, Length=340, Percent_Identity=32.3529411764706, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI6631085, Length=332, Percent_Identity=33.7349397590361, Blast_Score=125, Evalue=4e-29,
Organism=Homo sapiens, GI205360838, Length=354, Percent_Identity=27.4011299435028, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI205360840, Length=353, Percent_Identity=27.1954674220963, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI39204547, Length=321, Percent_Identity=30.2180685358255, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI7706495, Length=324, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI47777312, Length=149, Percent_Identity=43.6241610738255, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI194328760, Length=293, Percent_Identity=28.3276450511945, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI27151736, Length=106, Percent_Identity=49.0566037735849, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI194306642, Length=104, Percent_Identity=47.1153846153846, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI194306640, Length=104, Percent_Identity=47.1153846153846, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI88501736, Length=141, Percent_Identity=42.5531914893617, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI194328758, Length=293, Percent_Identity=28.3276450511945, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=60.6060606060606, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=60.6060606060606, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI23503241, Length=79, Percent_Identity=53.1645569620253, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI21553335, Length=67, Percent_Identity=58.2089552238806, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=56.25, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI56687498, Length=75, Percent_Identity=54.6666666666667, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI22749377, Length=69, Percent_Identity=57.9710144927536, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=50, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI5031741, Length=74, Percent_Identity=54.0540540540541, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI24308127, Length=68, Percent_Identity=48.5294117647059, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI72534740, Length=79, Percent_Identity=48.1012658227848, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4504511, Length=66, Percent_Identity=54.5454545454545, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI9558755, Length=76, Percent_Identity=48.6842105263158, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI68077168, Length=66, Percent_Identity=57.5757575757576, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI68077166, Length=66, Percent_Identity=57.5757575757576, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI217035105, Length=73, Percent_Identity=49.3150684931507, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI27735107, Length=80, Percent_Identity=45, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI221219056, Length=69, Percent_Identity=53.6231884057971, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI157671935, Length=62, Percent_Identity=48.3870967741936, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI262206280, Length=69, Percent_Identity=53.6231884057971, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787235, Length=305, Percent_Identity=34.7540983606557, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1786197, Length=138, Percent_Identity=41.304347826087, Blast_Score=120, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI17534355, Length=335, Percent_Identity=30.7462686567164, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17553098, Length=352, Percent_Identity=27.8409090909091, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI212645553, Length=68, Percent_Identity=52.9411764705882, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17554644, Length=66, Percent_Identity=57.5757575757576, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115532476, Length=74, Percent_Identity=56.7567567567568, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17553096, Length=64, Percent_Identity=56.25, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115532378, Length=68, Percent_Identity=48.5294117647059, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=55.5555555555556, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17568643, Length=66, Percent_Identity=53.030303030303, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17554900, Length=69, Percent_Identity=46.3768115942029, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17563890, Length=64, Percent_Identity=56.25, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17538236, Length=67, Percent_Identity=50.7462686567164, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17551190, Length=68, Percent_Identity=54.4117647058823, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323870, Length=67, Percent_Identity=55.2238805970149, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323119, Length=196, Percent_Identity=31.6326530612245, Blast_Score=83, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6324265, Length=66, Percent_Identity=60.6060606060606, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322194, Length=66, Percent_Identity=53.030303030303, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6322388, Length=69, Percent_Identity=50.7246376811594, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324321, Length=64, Percent_Identity=53.125, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323813, Length=121, Percent_Identity=42.1487603305785, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320888, Length=67, Percent_Identity=47.7611940298507, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324103, Length=63, Percent_Identity=55.5555555555556, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85726398, Length=351, Percent_Identity=29.3447293447293, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24658562, Length=332, Percent_Identity=30.1204819277108, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24658555, Length=332, Percent_Identity=30.1204819277108, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI18858081, Length=345, Percent_Identity=28.1159420289855, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI45552811, Length=269, Percent_Identity=29.7397769516729, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI45552813, Length=269, Percent_Identity=31.9702602230483, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI45549272, Length=269, Percent_Identity=31.9702602230483, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24654066, Length=68, Percent_Identity=60.2941176470588, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24654070, Length=68, Percent_Identity=60.2941176470588, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24654068, Length=68, Percent_Identity=60.2941176470588, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24654072, Length=68, Percent_Identity=60.2941176470588, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI19920464, Length=337, Percent_Identity=24.6290801186944, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI20129487, Length=105, Percent_Identity=46.6666666666667, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24584014, Length=105, Percent_Identity=46.6666666666667, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=62.5, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24668492, Length=68, Percent_Identity=55.8823529411765, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=51.5625, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=51.5625, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=51.5625, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24584630, Length=70, Percent_Identity=55.7142857142857, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17648033, Length=70, Percent_Identity=55.7142857142857, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24646562, Length=78, Percent_Identity=50, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24646560, Length=78, Percent_Identity=50, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24646558, Length=78, Percent_Identity=50, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24646556, Length=78, Percent_Identity=50, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21357547, Length=78, Percent_Identity=50, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21355911, Length=69, Percent_Identity=53.6231884057971, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24651439, Length=129, Percent_Identity=32.5581395348837, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24641698, Length=94, Percent_Identity=40.4255319148936, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641696, Length=94, Percent_Identity=40.4255319148936, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24651436, Length=66, Percent_Identity=46.969696969697, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358273, Length=69, Percent_Identity=53.6231884057971, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21358311, Length=66, Percent_Identity=46.969696969697, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24762799, Length=138, Percent_Identity=35.5072463768116, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19922238, Length=71, Percent_Identity=46.4788732394366, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 34598; Mature: 34467

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASDFKDYYKILGVSRDASAEEIKRVYRKLARQYHPDVNPGNKAAEERFKEINEAYEVL
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
SDPEKRRRYDQFGQYWQRVGTGSAAGMPGMEGFAQYASFEEFINELLGRMGSRRSGFQGF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AGGFGPFVSVDLPGQDVEGTLGLSWAEAFHGTQKRLNLDGETLTIRIPPGAKPGSRIRVK
CCCCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHEECCCCCEEEEEECCCCCCCCEEEEE
GKGQVSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAALGGTAEVPTPTGRV
CCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCHHHCCCCCCCCCCCCEE
QLRIPAGVDSGQTLRLRGQGWRDPQGQRSDLLVRLKVVAPKSLSQTERDLYEKLRQSRSW
EEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCC
DPRAHLQEVSL
CCHHHHHHCCC
>Mature Secondary Structure 
AASDFKDYYKILGVSRDASAEEIKRVYRKLARQYHPDVNPGNKAAEERFKEINEAYEVL
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
SDPEKRRRYDQFGQYWQRVGTGSAAGMPGMEGFAQYASFEEFINELLGRMGSRRSGFQGF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AGGFGPFVSVDLPGQDVEGTLGLSWAEAFHGTQKRLNLDGETLTIRIPPGAKPGSRIRVK
CCCCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHEECCCCCEEEEEECCCCCCCCEEEEE
GKGQVSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAALGGTAEVPTPTGRV
CCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCHHHCCCCCCCCCCCCEE
QLRIPAGVDSGQTLRLRGQGWRDPQGQRSDLLVRLKVVAPKSLSQTERDLYEKLRQSRSW
EEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCC
DPRAHLQEVSL
CCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]