Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608217

Identifier: 86608217

GI number: 86608217

Start: 754141

End: 755355

Strand: Reverse

Name: 86608217

Synonym: CYB_0733

Alternate gene names: NA

Gene position: 755355-754141 (Counterclockwise)

Preceding gene: 86608220

Following gene: 86608216

Centisome position: 24.79

GC content: 61.4

Gene sequence:

>1215_bases
ATGACCAGTCGCCTGCGCATCGGTAGCTTGTGGGGGATCCCCTTTTTCATCGACTACACCTGGTTCCCGGCGGCCCTCCT
GCTGGTGCTCTCCTACGGGGTGTTGACGGCGATGGGGTTGTTTCTTTCTCTGCTGGCCCATGAGTTGGCCCACAGCTTGG
TGGCCCGCGCCTATGGAGTACGGGTTAACTCCATCACCCTGTTTATTTTTGGGGGTATGGCGGCGATTGAGCGGGAAGTT
CCCCGCCCCCTTGGGGCTTTTTGCGTGGCGGTGGCAGGCCCTCTCCTCAGCTTGGGTCTGTTTGTTTTCTTCAGCGTGGC
CCGGGCTTGGGCTGTGCCGGAGTCGATGCTGGCCTCAACCCTTGCCAGCTTGGCTGCCATCAACCTGACGATTGCCCTGT
TTAACCTGCTGCCGGGCTTGCCTCTGGATGGGGGGCAAATGCTCAAGGCGGCCATCTGGGGTTGGACAGGGGATCGGCAA
AAGGGTATGCTGTGGGCGGCCCGAGCCGGCCAGGGGGTGGGCTGGGGTTTGGTGGGGCTAGGTCTGCTGGTGGTATTTTG
GGGGAGCCTCAACGGCCTCTGGGTGGGGTTGATCGGCCTGTTTATTTTGAACACCGCCCGCCGCTACAGCCAGTACGCGC
AACTGCAGCAGGTGCTGGCCCGCCTGAAAGCTGCAGATGTGATGACCCGCCAGTTTCGGGTTTTGGACGCGAACATGAGC
CTGCGGGAGTTTGTGGATCGCTATCTGGTGCCTTCTTCTCTCAGGCCGGAAGCTCCAACTCAGCCAGCGGAGGTTTATTT
TGCCGAGGAAGATGGCCGTTATCGCGGGTTGGTCAGGCCAGAACTGCTCAACGACATCGAGCGCAGCCAGTGGGATCGCC
TCACCCTCAAGGCTATTCTCAAGCCGATGGAGCAACTGCAGGGGGTACGAGAAGAGACCCCCATTCCCCAGGTGATTCAG
ATGATGCGCCAGGCGGAACCCCGCCGCATTTTGGTTTTCACGCCCACCGGCGCCATTGCTGGCTTGATCGACCGGGGGGA
TGTGGTGGCCATGGCTGCCCGGCAGTTGGGGGTCGTGCTGCCCCAAGAGGTGGTGCAGCGGGTGCGCGATAGCGAAGAAT
GGCCCCCTGGATTTCAGGTGGAGGACAATCTGGCCGGAGAGGGATCCCCCAGTCTGGCTTGGCAGGGATCCCCGGATTTC
CATCAAGAGCCTTAG

Upstream 100 bases:

>100_bases
TGGAGGAGAGGGATCCCAAGTTAAGGGGCTGCTTGTCGTCTTCAACAGCACCTTCCTGGGCCTTCTCCCCAGTGAGAGCT
GTGTAAGGAGTTGTATCGTC

Downstream 100 bases:

>100_bases
TTGGGGAGATGGGTGGACAGGGGGCGGCCCAAGGCGCCTAGGTTCTTCCTCTTCCACAAAAGGTTCCCCAAAAGGGGCGG
AGCGTTTTGCCTCCGCAAGC

Product: M50B family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGVRVNSITLFIFGGMAAIEREV
PRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLASTLASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQ
KGMLWAARAGQGVGWGLVGLGLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS
LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAILKPMEQLQGVREETPIPQVIQ
MMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVLPQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDF
HQEP

Sequences:

>Translated_404_residues
MTSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGVRVNSITLFIFGGMAAIEREV
PRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLASTLASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQ
KGMLWAARAGQGVGWGLVGLGLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS
LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAILKPMEQLQGVREETPIPQVIQ
MMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVLPQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDF
HQEP
>Mature_403_residues
TSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGVRVNSITLFIFGGMAAIEREVP
RPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLASTLASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQK
GMLWAARAGQGVGWGLVGLGLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMSL
REFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAILKPMEQLQGVREETPIPQVIQM
MRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVLPQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDFH
QEP

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR008915
- InterPro:   IPR016483 [H]

Pfam domain/function: PF00571 CBS; PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 44523; Mature: 44391

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGV
CCCCCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVNSITLFIFGGMAAIEREVPRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLAST
EECEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQKGMLWAARAGQGVGWGLVGL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHH
GLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAIL
HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KPMEQLQGVREETPIPQVIQMMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVL
HHHHHHCCCHHCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCC
PQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDFHQEP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
>Mature Secondary Structure 
TSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGV
CCCCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RVNSITLFIFGGMAAIEREVPRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLAST
EECEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQKGMLWAARAGQGVGWGLVGL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHH
GLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAIL
HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KPMEQLQGVREETPIPQVIQMMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVL
HHHHHHCCCHHCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCC
PQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDFHQEP
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]