| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608217
Identifier: 86608217
GI number: 86608217
Start: 754141
End: 755355
Strand: Reverse
Name: 86608217
Synonym: CYB_0733
Alternate gene names: NA
Gene position: 755355-754141 (Counterclockwise)
Preceding gene: 86608220
Following gene: 86608216
Centisome position: 24.79
GC content: 61.4
Gene sequence:
>1215_bases ATGACCAGTCGCCTGCGCATCGGTAGCTTGTGGGGGATCCCCTTTTTCATCGACTACACCTGGTTCCCGGCGGCCCTCCT GCTGGTGCTCTCCTACGGGGTGTTGACGGCGATGGGGTTGTTTCTTTCTCTGCTGGCCCATGAGTTGGCCCACAGCTTGG TGGCCCGCGCCTATGGAGTACGGGTTAACTCCATCACCCTGTTTATTTTTGGGGGTATGGCGGCGATTGAGCGGGAAGTT CCCCGCCCCCTTGGGGCTTTTTGCGTGGCGGTGGCAGGCCCTCTCCTCAGCTTGGGTCTGTTTGTTTTCTTCAGCGTGGC CCGGGCTTGGGCTGTGCCGGAGTCGATGCTGGCCTCAACCCTTGCCAGCTTGGCTGCCATCAACCTGACGATTGCCCTGT TTAACCTGCTGCCGGGCTTGCCTCTGGATGGGGGGCAAATGCTCAAGGCGGCCATCTGGGGTTGGACAGGGGATCGGCAA AAGGGTATGCTGTGGGCGGCCCGAGCCGGCCAGGGGGTGGGCTGGGGTTTGGTGGGGCTAGGTCTGCTGGTGGTATTTTG GGGGAGCCTCAACGGCCTCTGGGTGGGGTTGATCGGCCTGTTTATTTTGAACACCGCCCGCCGCTACAGCCAGTACGCGC AACTGCAGCAGGTGCTGGCCCGCCTGAAAGCTGCAGATGTGATGACCCGCCAGTTTCGGGTTTTGGACGCGAACATGAGC CTGCGGGAGTTTGTGGATCGCTATCTGGTGCCTTCTTCTCTCAGGCCGGAAGCTCCAACTCAGCCAGCGGAGGTTTATTT TGCCGAGGAAGATGGCCGTTATCGCGGGTTGGTCAGGCCAGAACTGCTCAACGACATCGAGCGCAGCCAGTGGGATCGCC TCACCCTCAAGGCTATTCTCAAGCCGATGGAGCAACTGCAGGGGGTACGAGAAGAGACCCCCATTCCCCAGGTGATTCAG ATGATGCGCCAGGCGGAACCCCGCCGCATTTTGGTTTTCACGCCCACCGGCGCCATTGCTGGCTTGATCGACCGGGGGGA TGTGGTGGCCATGGCTGCCCGGCAGTTGGGGGTCGTGCTGCCCCAAGAGGTGGTGCAGCGGGTGCGCGATAGCGAAGAAT GGCCCCCTGGATTTCAGGTGGAGGACAATCTGGCCGGAGAGGGATCCCCCAGTCTGGCTTGGCAGGGATCCCCGGATTTC CATCAAGAGCCTTAG
Upstream 100 bases:
>100_bases TGGAGGAGAGGGATCCCAAGTTAAGGGGCTGCTTGTCGTCTTCAACAGCACCTTCCTGGGCCTTCTCCCCAGTGAGAGCT GTGTAAGGAGTTGTATCGTC
Downstream 100 bases:
>100_bases TTGGGGAGATGGGTGGACAGGGGGCGGCCCAAGGCGCCTAGGTTCTTCCTCTTCCACAAAAGGTTCCCCAAAAGGGGCGG AGCGTTTTGCCTCCGCAAGC
Product: M50B family peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MTSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGVRVNSITLFIFGGMAAIEREV PRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLASTLASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQ KGMLWAARAGQGVGWGLVGLGLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAILKPMEQLQGVREETPIPQVIQ MMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVLPQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDF HQEP
Sequences:
>Translated_404_residues MTSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGVRVNSITLFIFGGMAAIEREV PRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLASTLASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQ KGMLWAARAGQGVGWGLVGLGLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAILKPMEQLQGVREETPIPQVIQ MMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVLPQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDF HQEP >Mature_403_residues TSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGVRVNSITLFIFGGMAAIEREVP RPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLASTLASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQK GMLWAARAGQGVGWGLVGLGLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMSL REFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAILKPMEQLQGVREETPIPQVIQM MRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVLPQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDFH QEP
Specific function: Unknown
COG id: COG1994
COG function: function code R; Zn-dependent proteases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000644 - InterPro: IPR008915 - InterPro: IPR016483 [H]
Pfam domain/function: PF00571 CBS; PF02163 Peptidase_M50 [H]
EC number: NA
Molecular weight: Translated: 44523; Mature: 44391
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGV CCCCCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RVNSITLFIFGGMAAIEREVPRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLAST EECEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH LASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQKGMLWAARAGQGVGWGLVGL HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHH GLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAIL HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH KPMEQLQGVREETPIPQVIQMMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVL HHHHHHCCCHHCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCC PQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDFHQEP HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC >Mature Secondary Structure TSRLRIGSLWGIPFFIDYTWFPAALLLVLSYGVLTAMGLFLSLLAHELAHSLVARAYGV CCCCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RVNSITLFIFGGMAAIEREVPRPLGAFCVAVAGPLLSLGLFVFFSVARAWAVPESMLAST EECEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH LASLAAINLTIALFNLLPGLPLDGGQMLKAAIWGWTGDRQKGMLWAARAGQGVGWGLVGL HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHH GLLVVFWGSLNGLWVGLIGLFILNTARRYSQYAQLQQVLARLKAADVMTRQFRVLDANMS HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH LREFVDRYLVPSSLRPEAPTQPAEVYFAEEDGRYRGLVRPELLNDIERSQWDRLTLKAIL HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH KPMEQLQGVREETPIPQVIQMMRQAEPRRILVFTPTGAIAGLIDRGDVVAMAARQLGVVL HHHHHHCCCHHCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCC PQEVVQRVRDSEEWPPGFQVEDNLAGEGSPSLAWQGSPDFHQEP HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]