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The map label for this gene is cpcT1 [H]

Identifier: 86608101

GI number: 86608101

Start: 622509

End: 623096

Strand: Reverse

Name: cpcT1 [H]

Synonym: CYB_0612

Alternate gene names: 86608101

Gene position: 623096-622509 (Counterclockwise)

Preceding gene: 86608103

Following gene: 86608095

Centisome position: 20.45

GC content: 59.52

Gene sequence:

>588_bases
ATGGTAGACGAAAAATCCGCTTCCGACTTGCACACCCTGGCCAACTGGCTGGAGGGCTACTACAGCAACCGCACCCAGGC
GATGGCAGAGCCGGTGTGGTTTGTGCCGGTCAGCCTTTGGTACGTGCGCCTTCCCCACCTGTTCTCGGAGGGGATCGGCT
TTTTTACCGAGCAATTTAACCAGCACACGCCGGGCCAGTTTTATCGCAGCCGGGTGCTCCAGGTATTGGGGGATCCCTTG
CGGATCGAGAACTACAAATTGCGGGATCAAGCAGCTTGGGCAGGTGCCTCTCAGGATCCGCAGCGCTTGGCGCAGCTCTC
CTTGGCCGACCTGGAGCATTTGCCCGGTTGTCGCATTTTGGTGGAAAAGCGCCCAGACTGCTACCACGGCGAAATGCTGC
CAGGTGGAGAATGTCGTCTGAACCCCGGGGATAGCACCTATATCCACATCGAGTTCGACCTCACCCCCAGCGAATTCATC
ACCTGGGATCGGGGCTTTGACGCCGCCACTGGCCAACAAACCTGGGGATCCCGCGCCGGACCCTACCGCTACCAAAAAGG
GATCCCACCGGCTCCTCTTCAGGTCTGA

Upstream 100 bases:

>100_bases
GCCTGGGTGACGCGGGCTAGGGCTCCCGGCTGGTTGAGCAGGCGAATGCGCAGGGCAATGCTATAGCTAGAGCTGGGGGT
AAGTTTTGTCATAGCTCCCT

Downstream 100 bases:

>100_bases
ACCTTCAAAACAGGAAGGGAAACAGATCTCGAAACCCTTTGCGCAGCCTGAGCAAAAAGATCAGCCGCTCCACCTCTGGA
GAGACAGATCCGGTTTCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MVDEKSASDLHTLANWLEGYYSNRTQAMAEPVWFVPVSLWYVRLPHLFSEGIGFFTEQFNQHTPGQFYRSRVLQVLGDPL
RIENYKLRDQAAWAGASQDPQRLAQLSLADLEHLPGCRILVEKRPDCYHGEMLPGGECRLNPGDSTYIHIEFDLTPSEFI
TWDRGFDAATGQQTWGSRAGPYRYQKGIPPAPLQV

Sequences:

>Translated_195_residues
MVDEKSASDLHTLANWLEGYYSNRTQAMAEPVWFVPVSLWYVRLPHLFSEGIGFFTEQFNQHTPGQFYRSRVLQVLGDPL
RIENYKLRDQAAWAGASQDPQRLAQLSLADLEHLPGCRILVEKRPDCYHGEMLPGGECRLNPGDSTYIHIEFDLTPSEFI
TWDRGFDAATGQQTWGSRAGPYRYQKGIPPAPLQV
>Mature_195_residues
MVDEKSASDLHTLANWLEGYYSNRTQAMAEPVWFVPVSLWYVRLPHLFSEGIGFFTEQFNQHTPGQFYRSRVLQVLGDPL
RIENYKLRDQAAWAGASQDPQRLAQLSLADLEHLPGCRILVEKRPDCYHGEMLPGGECRLNPGDSTYIHIEFDLTPSEFI
TWDRGFDAATGQQTWGSRAGPYRYQKGIPPAPLQV

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcT/CpeT biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010404 [H]

Pfam domain/function: PF06206 DUF1001 [H]

EC number: NA

Molecular weight: Translated: 22229; Mature: 22229

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDEKSASDLHTLANWLEGYYSNRTQAMAEPVWFVPVSLWYVRLPHLFSEGIGFFTEQFN
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
QHTPGQFYRSRVLQVLGDPLRIENYKLRDQAAWAGASQDPQRLAQLSLADLEHLPGCRIL
CCCCHHHHHHHHHHHHCCCEEECCEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE
VEKRPDCYHGEMLPGGECRLNPGDSTYIHIEFDLTPSEFITWDRGFDAATGQQTWGSRAG
EECCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCHHHHEEECCCCCCCCCCCCCCCCCC
PYRYQKGIPPAPLQV
CCHHHCCCCCCCCCC
>Mature Secondary Structure
MVDEKSASDLHTLANWLEGYYSNRTQAMAEPVWFVPVSLWYVRLPHLFSEGIGFFTEQFN
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
QHTPGQFYRSRVLQVLGDPLRIENYKLRDQAAWAGASQDPQRLAQLSLADLEHLPGCRIL
CCCCHHHHHHHHHHHHCCCEEECCEECCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE
VEKRPDCYHGEMLPGGECRLNPGDSTYIHIEFDLTPSEFITWDRGFDAATGQQTWGSRAG
EECCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCHHHHEEECCCCCCCCCCCCCCCCCC
PYRYQKGIPPAPLQV
CCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA