Click here to switch to the map view.

The map label for this gene is apcE [H]

Identifier: 86608061

GI number: 86608061

Start: 578667

End: 579200

Strand: Reverse

Name: apcE [H]

Synonym: CYB_0568

Alternate gene names: 86608061

Gene position: 579200-578667 (Counterclockwise)

Preceding gene: 86608063

Following gene: 86608059

Centisome position: 19.01

GC content: 60.49

Gene sequence:

>534_bases
ATGGAATCGCGCCAGCGCCGGCAGGATCCGCAAACGTTGCAAAACCTGTTGCGGGCTGCCTACCAACAGCTTTTGGAACG
CCAGCCCTACCAGCACGAGAAAACAGGAGAGCTGGAGAAAATCGAGCAGGACTTCTTGCGGGGGCGGATCGGGATTAAGC
GCTTGGTTCGCCAGATTGGGGGATCCCGGCTCTACCGGCAACTCTTTTTCAGTGCCGGCTGCAACACCCGCTGTGTAGAG
CAGGGCTTCAAGCACTTTTTGGGACGGGCCCCGGCCAGCAAGGAGGAGGTGGCCGCCTACCACGACATTTTGGTGCACCA
GGGCTTGCAGGCCATGGTCAATGCCTTTATCGACTCGGAGGAGTACCGCCACCAGTTCGGCAACGACCATCTGCCCCACC
CCCGCCAACGGCTGAGCGGCCACCCACCTTTGGCCTACTTGCTGACAAACCAAATGCACCGGCGCCATGAGCTGGGGATG
CAGGGATCCCCGCTTTTGCACAGTTTGGCGGCGATGGAAGTGGGGATCCCTTAG

Upstream 100 bases:

>100_bases
TTTGCTATTCCCTTCATAATTTCTTTAAAGTAGTCCCCCATTTTGTCTGTAAATCGATCTTTTCTGTTTTTGTTGGCTTC
GTCGATTGGGAGCTAGGGTT

Downstream 100 bases:

>100_bases
GCAGTGGGGCCGGGGAGGAAGTCGAGGGTATAGGCTTGGCCCACATCCAAGTTGGCTTCCACCGTTCCCAGGGCCACCAT
CTCCTGAAAGTAGGTTTGCC

Product: phycobilisome linker polypeptide

Products: NA

Alternate protein names: Phycobilisome LCM core-membrane linker polypeptide; Phycobilisome core-membrane linker phycobiliprotein ApcE [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MESRQRRQDPQTLQNLLRAAYQQLLERQPYQHEKTGELEKIEQDFLRGRIGIKRLVRQIGGSRLYRQLFFSAGCNTRCVE
QGFKHFLGRAPASKEEVAAYHDILVHQGLQAMVNAFIDSEEYRHQFGNDHLPHPRQRLSGHPPLAYLLTNQMHRRHELGM
QGSPLLHSLAAMEVGIP

Sequences:

>Translated_177_residues
MESRQRRQDPQTLQNLLRAAYQQLLERQPYQHEKTGELEKIEQDFLRGRIGIKRLVRQIGGSRLYRQLFFSAGCNTRCVE
QGFKHFLGRAPASKEEVAAYHDILVHQGLQAMVNAFIDSEEYRHQFGNDHLPHPRQRLSGHPPLAYLLTNQMHRRHELGM
QGSPLLHSLAAMEVGIP
>Mature_177_residues
MESRQRRQDPQTLQNLLRAAYQQLLERQPYQHEKTGELEKIEQDFLRGRIGIKRLVRQIGGSRLYRQLFFSAGCNTRCVE
QGFKHFLGRAPASKEEVAAYHDILVHQGLQAMVNAFIDSEEYRHQFGNDHLPHPRQRLSGHPPLAYLLTNQMHRRHELGM
QGSPLLHSLAAMEVGIP

Specific function: This protein is postulated to act both as terminal energy acceptor (by its phycobilin-like domains) and as a linker polypeptide (by its repeats and arms) that stabilizes the phycobilisome core architecture. Has intrinsic bilin lyase activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Anchors the phycobilisome perpendicularly to the cytoplasmic surface of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PBS-linker domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR001297
- InterPro:   IPR012128
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly; PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 20485; Mature: 20485

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESRQRRQDPQTLQNLLRAAYQQLLERQPYQHEKTGELEKIEQDFLRGRIGIKRLVRQIG
CCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GSRLYRQLFFSAGCNTRCVEQGFKHFLGRAPASKEEVAAYHDILVHQGLQAMVNAFIDSE
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
EYRHQFGNDHLPHPRQRLSGHPPLAYLLTNQMHRRHELGMQGSPLLHSLAAMEVGIP
HHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MESRQRRQDPQTLQNLLRAAYQQLLERQPYQHEKTGELEKIEQDFLRGRIGIKRLVRQIG
CCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GSRLYRQLFFSAGCNTRCVEQGFKHFLGRAPASKEEVAAYHDILVHQGLQAMVNAFIDSE
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCH
EYRHQFGNDHLPHPRQRLSGHPPLAYLLTNQMHRRHELGMQGSPLLHSLAAMEVGIP
HHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]