| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608050
Identifier: 86608050
GI number: 86608050
Start: 568793
End: 569143
Strand: Reverse
Name: 86608050
Synonym: CYB_0558
Alternate gene names: NA
Gene position: 569143-568793 (Counterclockwise)
Preceding gene: 86608052
Following gene: 86608049
Centisome position: 18.68
GC content: 52.14
Gene sequence:
>351_bases ATGCCTTTGATCAAGCTGCAAACGTCTGTGCAACCAGAAATCGCCGCAGTAGAGGAACTGCTCAAGGTGCTGTCTGCTGC TCTATCGGAACAGTTGGGCAAGTCGGAAGCCTACGTGATGACTGCCTTTGAAGGTGGGATCCCGATGACCTTTGCTGGCA GTGGGGATCCCTGTTGTTACCTAGAAATCAAGAGTATCGGGCAATTTTCCGCCCAACAAACCCGGGCCATGAGCGAGTTT TTTTGTGGCACCATCGAGGCCCGATTGGGGATCCCCAAGAAGAGGATTTACATTGAGTTCAGCGATGCCAAAGGCTATCT TTGGGGATGGAACGGCACGACTTTCGGGTAA
Upstream 100 bases:
>100_bases CAACTCTGTCGCTACGCTACCACAGGTGGATTGCCGAAGAGCGGGGCCAAGAATGCCAAGATGAATTTCAAGATGAATTT GTTGATAGGGAGAGGGATCC
Downstream 100 bases:
>100_bases AGATACTTCCCCCACTCCAAGAGCTGTCTACTCTGGCTTGCCCTAGCTCGCCTCACAAGAACTTTGTAGGAGTTTAGCCA ATGGAAGAGCTACCTCAACT
Product: hypothetical protein
Products: NA
Alternate protein names: Macrophage Migration Inhibitory Factor; ATLS1-Like Light-Inducible Protein; Phenylpyruvate Tautomerase; Macrophage Migration Inhibitory Factor Superfamily; Phenylpyruvate Tautomerase Family Protein; MIF/Phenylpyruvate Tautomerase Family Protein; Macrophage Migration Inhibitory Factor Family; Glycosyl Transferase
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MPLIKLQTSVQPEIAAVEELLKVLSAALSEQLGKSEAYVMTAFEGGIPMTFAGSGDPCCYLEIKSIGQFSAQQTRAMSEF FCGTIEARLGIPKKRIYIEFSDAKGYLWGWNGTTFG
Sequences:
>Translated_116_residues MPLIKLQTSVQPEIAAVEELLKVLSAALSEQLGKSEAYVMTAFEGGIPMTFAGSGDPCCYLEIKSIGQFSAQQTRAMSEF FCGTIEARLGIPKKRIYIEFSDAKGYLWGWNGTTFG >Mature_115_residues PLIKLQTSVQPEIAAVEELLKVLSAALSEQLGKSEAYVMTAFEGGIPMTFAGSGDPCCYLEIKSIGQFSAQQTRAMSEFF CGTIEARLGIPKKRIYIEFSDAKGYLWGWNGTTFG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4505185, Length=116, Percent_Identity=31.8965517241379, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17556260, Length=116, Percent_Identity=35.3448275862069, Blast_Score=70, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12668; Mature: 12537
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLIKLQTSVQPEIAAVEELLKVLSAALSEQLGKSEAYVMTAFEGGIPMTFAGSGDPCCY CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCEEE LEIKSIGQFSAQQTRAMSEFFCGTIEARLGIPKKRIYIEFSDAKGYLWGWNGTTFG EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCCC >Mature Secondary Structure PLIKLQTSVQPEIAAVEELLKVLSAALSEQLGKSEAYVMTAFEGGIPMTFAGSGDPCCY CEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCEEE LEIKSIGQFSAQQTRAMSEFFCGTIEARLGIPKKRIYIEFSDAKGYLWGWNGTTFG EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA