Click here to switch to the map view.

The map label for this gene is kaiA [H]

Identifier: 86607984

GI number: 86607984

Start: 503233

End: 504237

Strand: Reverse

Name: kaiA [H]

Synonym: CYB_0490

Alternate gene names: 86607984

Gene position: 504237-503233 (Counterclockwise)

Preceding gene: 86607989

Following gene: 86607983

Centisome position: 16.55

GC content: 58.21

Gene sequence:

>1005_bases
TTGTTGCCTGACACCCATCCACTGCGCATCAACCTGTTGCTGGATTGGGAGCCGCCAGCAGGAGAGCCCCTAGCTTGCGA
GGACTGGCTACCCCCTGAACGCTTTGTTGTCGAGTGTTTTCAGGATCAAGCTACCTTCCTAGAGGCTCTCAGAAAACAAG
ACGGCCATGTCGATTGCTTGGTGCTCCTGGTGGATCCCACTCGGCTGCAAGAGCTGCACGATCTGGGCAATCAGCTCTGC
GCGTGGGGACTGCTGCTGCCGACGGTGTTGGCGATTGTGCTGGAAGAATCCCACCTGCAAAAGGAAACACCGGAGACGGA
AGGAGAGATCCCTGCCACCTCATCTTTGGTGAAAGCATTGCTCAAGCGAGAGCAGTTTTTCTACCACAACGCCACCCTCG
TCCGTCCCATTTCGCCACAGGAGCTGAAGGGGCAGGTGCGGGCCGACTGTACCGCTTCGGGATCCCCTTCCGTCTTGGAG
CTGCTGGTGGATCGGGCCATCGCCTTGTTTCTGCAGATGTCTCCCACTTGCGGCCTCCCGCAGGGCCCAGTGCATCCCAG
CGATCAGCCCTACCTGGCCTACAGCAACCAACAACAACGGCGGCTGGCGGAGAAATTGCGGGAACGGCTGGGCTACGCCG
GAGTGTACTATCATCGTGACCCAGAGCTGTTTTACCGTCGCCTCCCGCCCCACGAGCAGCAAGCCCTCATGCGACGGCTG
CGTAACCTTTACCAGGCAATCGTCTTGGACTATTTTCAATCTCCCGAGACCGTCAATGCCCGCATCGACGAGCTGGTGGC
CTTGGCCTTTTTTGCCGATATCGGCGCTGCTCAACTGCTGGAGCTGCACATGAACTTGATGGAAGACTTTGCCAAACAAT
TGAAGCTGGAAGGCCGCAGCGAAGAGATCCTGCTGGATTACCGCCTTACCCTGATCGATGTGATGGCCCACCTGAGCGAA
ATGTACCGCCGCTCCATTCCCAAACCTGCCCCAAGGGATCCCTGA

Upstream 100 bases:

>100_bases
CTCACCCCTAGTTTAGGTTTTTCTCCCGCTCTTTTCCTCTGGCCGGTGAGCGCGGATCCCGGTCAGATTTAAGATAGGAA
ATATATCTTCATCCTTTGTC

Downstream 100 bases:

>100_bases
TTATGTCCACTCGCAAAGCCTATGTTCTCAAGCTCTACGTGGCGGGCAACACCCCCAATTCTCTGCGTGCCCTCAGCACC
TTGCAAGACATCTTGGAAAA

Product: circadian clock protein KaiA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLPDTHPLRINLLLDWEPPAGEPLACEDWLPPERFVVECFQDQATFLEALRKQDGHVDCLVLLVDPTRLQELHDLGNQLC
AWGLLLPTVLAIVLEESHLQKETPETEGEIPATSSLVKALLKREQFFYHNATLVRPISPQELKGQVRADCTASGSPSVLE
LLVDRAIALFLQMSPTCGLPQGPVHPSDQPYLAYSNQQQRRLAEKLRERLGYAGVYYHRDPELFYRRLPPHEQQALMRRL
RNLYQAIVLDYFQSPETVNARIDELVALAFFADIGAAQLLELHMNLMEDFAKQLKLEGRSEEILLDYRLTLIDVMAHLSE
MYRRSIPKPAPRDP

Sequences:

>Translated_334_residues
MLPDTHPLRINLLLDWEPPAGEPLACEDWLPPERFVVECFQDQATFLEALRKQDGHVDCLVLLVDPTRLQELHDLGNQLC
AWGLLLPTVLAIVLEESHLQKETPETEGEIPATSSLVKALLKREQFFYHNATLVRPISPQELKGQVRADCTASGSPSVLE
LLVDRAIALFLQMSPTCGLPQGPVHPSDQPYLAYSNQQQRRLAEKLRERLGYAGVYYHRDPELFYRRLPPHEQQALMRRL
RNLYQAIVLDYFQSPETVNARIDELVALAFFADIGAAQLLELHMNLMEDFAKQLKLEGRSEEILLDYRLTLIDVMAHLSE
MYRRSIPKPAPRDP
>Mature_334_residues
MLPDTHPLRINLLLDWEPPAGEPLACEDWLPPERFVVECFQDQATFLEALRKQDGHVDCLVLLVDPTRLQELHDLGNQLC
AWGLLLPTVLAIVLEESHLQKETPETEGEIPATSSLVKALLKREQFFYHNATLVRPISPQELKGQVRADCTASGSPSVLE
LLVDRAIALFLQMSPTCGLPQGPVHPSDQPYLAYSNQQQRRLAEKLRERLGYAGVYYHRDPELFYRRLPPHEQQALMRRL
RNLYQAIVLDYFQSPETVNARIDELVALAFFADIGAAQLLELHMNLMEDFAKQLKLEGRSEEILLDYRLTLIDVMAHLSE
MYRRSIPKPAPRDP

Specific function: Component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of c

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 kaiA N-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR011648
- InterPro:   IPR020844
- InterPro:   IPR020856
- InterPro:   IPR017944 [H]

Pfam domain/function: PF07688 KaiA [H]

EC number: NA

Molecular weight: Translated: 38174; Mature: 38174

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDTHPLRINLLLDWEPPAGEPLACEDWLPPERFVVECFQDQATFLEALRKQDGHVDCL
CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
VLLVDPTRLQELHDLGNQLCAWGLLLPTVLAIVLEESHLQKETPETEGEIPATSSLVKAL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LKREQFFYHNATLVRPISPQELKGQVRADCTASGSPSVLELLVDRAIALFLQMSPTCGLP
HHHHHHHHCCCEEEECCCHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
QGPVHPSDQPYLAYSNQQQRRLAEKLRERLGYAGVYYHRDPELFYRRLPPHEQQALMRRL
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHH
RNLYQAIVLDYFQSPETVNARIDELVALAFFADIGAAQLLELHMNLMEDFAKQLKLEGRS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EEILLDYRLTLIDVMAHLSEMYRRSIPKPAPRDP
CEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLPDTHPLRINLLLDWEPPAGEPLACEDWLPPERFVVECFQDQATFLEALRKQDGHVDCL
CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
VLLVDPTRLQELHDLGNQLCAWGLLLPTVLAIVLEESHLQKETPETEGEIPATSSLVKAL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LKREQFFYHNATLVRPISPQELKGQVRADCTASGSPSVLELLVDRAIALFLQMSPTCGLP
HHHHHHHHCCCEEEECCCHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
QGPVHPSDQPYLAYSNQQQRRLAEKLRERLGYAGVYYHRDPELFYRRLPPHEQQALMRRL
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCHHHHHHHHHH
RNLYQAIVLDYFQSPETVNARIDELVALAFFADIGAAQLLELHMNLMEDFAKQLKLEGRS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EEILLDYRLTLIDVMAHLSEMYRRSIPKPAPRDP
CEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA