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The map label for this gene is kaiC

Identifier: 86607982

GI number: 86607982

Start: 501274

End: 502899

Strand: Reverse

Name: kaiC

Synonym: CYB_0488

Alternate gene names: 86607982

Gene position: 502899-501274 (Counterclockwise)

Preceding gene: 86607983

Following gene: 86607981

Centisome position: 16.51

GC content: 58.86

Gene sequence:

>1626_bases
ATGAACCAGTCATTGGGGCCTTCTGAGCCAGAAAAGCCACAAGATAACACCGCAGAGGACTCCACCGAACCAACCCCAGA
CAACCACCGGGCGGATCTCTCAGAGCTGCGAGGGATCCCCAAAAAACAGACGGGCATCGAGGGCTTTGAAGACATCAGTC
ACGGTGGGCTACCCCTGGGACGCACCACCTTGGTCAGCGGCACCTCCGGCACCGGCAAAACCCTGTTTGCCATGCAGTTC
CTTTACAACGGCATCGTGAAGTATCAAGAGCCGGGGATCTTCGTCACCTTCGAGGAAACCCCCGCCGATATCATTCGCAA
TGCCTCCAGCTTTGGCTGGGATCTGCAGGCCCTCATCGACAGGGGCCAACTGTTTATCCTGGATGCCTCCCCCGATCCCG
AAGGCTATGAGGTGAGCGGCAACTTTGATTTGTCGGCCCTCATCGAGCGCATCCAGTACGCCATTCGCAAATACAAAGCC
AAGCGGGTCTCCATCGACTCGGTGACGGCCATCTTTCAGCAATACGACCCTGCCGGTGTGGTGCGGCGGGAGCTGTTCCG
CCTGACGGCCCGCCTCAAGCAGGCCAATGTCACCACCGTCATGACCACAGAGCGCACCGACGAGTACGGTCCCATCGCCC
GCTACGGTGTGGAAGAATTCGTCTCCGACAACGTGGTGATCCTGCGCAACATCCTGGAGGGAGAGAAACGGCGGCGCACC
ATTGAGATCTTGAAGCTGCGGGGCACCACCCACATGAAGGGGGAATATCCCTTCACCATCACCAACGACGGGATCAACAT
CTTCCCCTTGGGAGCCATGCAGCTGACGCAGCGCTCCTCCAACGTGCGGGTCTCCTCCGGCATCGAGAAGCTGGACGAAA
TGTGCGGCGGCGGTTTCTTCAAGGACTCGATTATTTTGGCCACCGGCGCCACCGGCACGGGCAAAACCTCGCTGGTGAGC
AAATTCCTGGAGCGGGGCTGCCTGGATGGGGAACGCTGCATTCTCTTTGCCTACGAAGAGTCGCGGGCGCAGCTGTCCCG
CAACGCCTCCTCCTGGGGCATTGACCTGGAAGAGTTCGAGCGGCAGGGCCTCCTCAAGATCATCTGCGCCTACCCAGAAT
CTGCCGGCCTGGAAGACCACCTGCAGAAGATCAAAACCGAGATGATGGCCTTCAAGCCCTCCCGCATGGCCATCGACTCC
CTGTCAGCCCTGGCGCGGGGAGTGAGCCAAAATGCCTTCCGCCAGTTTGTAATCGGGGTAACTGGCCTGGCCAAGCAGGA
GGAGATCACCGGCTTTTTCACCAACACCACCGACCAATTCATGGGATCCCATTCCATCACCGAATCCCATATTTCCACCA
TCACCGACACGATTATCCTGCTGCAATACGTGGAGATCCGCGGAGAAATGGCCCGCGCCCTCAACGTCTTCAAAATGCGG
GGATCCTGGCACGACAAAGGGATCCGCGAGTACCTGATCTCCAACGCAGGCATCCAAATCCGCGATTCCTTCCGGGGCTA
CGAGCGCATCATCAGCGGATCCCCGACCCGCATCAATGTGGATGAGAAAAACGAGCTCTCCCGGATTGTGCAAAACGTCC
AGGCCCTCGAGGAAGAAGGGTTGTGA

Upstream 100 bases:

>100_bases
GATCTGTCCAACCGCGAGAAAGTGCTCATCGGCCTGGATCTGCTCTACGAAGAATTGGACGAAGAGGCTTGAGACAGGCT
GCAGGAGCAAGGAGAGTGGG

Downstream 100 bases:

>100_bases
GCGGTTACAACAGTTCCGTGAGTGGGCGCGGCAACAGACCCGTTGAGTCAAGCGAATTTCCAACACCGCTCAACACCGCG
CAAGCCCTGCACTTGCGGCT

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MNQSLGPSEPEKPQDNTAEDSTEPTPDNHRADLSELRGIPKKQTGIEGFEDISHGGLPLGRTTLVSGTSGTGKTLFAMQF
LYNGIVKYQEPGIFVTFEETPADIIRNASSFGWDLQALIDRGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKA
KRVSIDSVTAIFQQYDPAGVVRRELFRLTARLKQANVTTVMTTERTDEYGPIARYGVEEFVSDNVVILRNILEGEKRRRT
IEILKLRGTTHMKGEYPFTITNDGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSIILATGATGTGKTSLVS
KFLERGCLDGERCILFAYEESRAQLSRNASSWGIDLEEFERQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDS
LSALARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMR
GSWHDKGIREYLISNAGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQALEEEGL

Sequences:

>Translated_541_residues
MNQSLGPSEPEKPQDNTAEDSTEPTPDNHRADLSELRGIPKKQTGIEGFEDISHGGLPLGRTTLVSGTSGTGKTLFAMQF
LYNGIVKYQEPGIFVTFEETPADIIRNASSFGWDLQALIDRGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKA
KRVSIDSVTAIFQQYDPAGVVRRELFRLTARLKQANVTTVMTTERTDEYGPIARYGVEEFVSDNVVILRNILEGEKRRRT
IEILKLRGTTHMKGEYPFTITNDGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSIILATGATGTGKTSLVS
KFLERGCLDGERCILFAYEESRAQLSRNASSWGIDLEEFERQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDS
LSALARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMR
GSWHDKGIREYLISNAGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQALEEEGL
>Mature_541_residues
MNQSLGPSEPEKPQDNTAEDSTEPTPDNHRADLSELRGIPKKQTGIEGFEDISHGGLPLGRTTLVSGTSGTGKTLFAMQF
LYNGIVKYQEPGIFVTFEETPADIIRNASSFGWDLQALIDRGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKA
KRVSIDSVTAIFQQYDPAGVVRRELFRLTARLKQANVTTVMTTERTDEYGPIARYGVEEFVSDNVVILRNILEGEKRRRT
IEILKLRGTTHMKGEYPFTITNDGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSIILATGATGTGKTSLVS
KFLERGCLDGERCILFAYEESRAQLSRNASSWGIDLEEFERQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDS
LSALARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMR
GSWHDKGIREYLISNAGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQALEEEGL

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KAIC_SYNLI (Q8GGL1)

Other databases:

- EMBL:   AF497977
- ProteinModelPortal:   Q8GGL1
- SMR:   Q8GGL1
- BRENDA:   2.7.11.1
- GO:   GO:0006350
- HAMAP:   MF_01836
- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624
- TIGRFAMs:   TIGR02655

Pfam domain/function: PF06745 KaiC

EC number: =2.7.11.1

Molecular weight: Translated: 60285; Mature: 60285

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSLGPSEPEKPQDNTAEDSTEPTPDNHRADLSELRGIPKKQTGIEGFEDISHGGLPLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHCCCCCHHHHCCCCCCCC
RTTLVSGTSGTGKTLFAMQFLYNGIVKYQEPGIFVTFEETPADIIRNASSFGWDLQALID
CEEEEECCCCCCHHHHHHHHHHHCHHEECCCCEEEEECCCHHHHHHCCHHCCCHHHHHHC
RGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKAKRVSIDSVTAIFQQYDPAGV
CCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
VRRELFRLTARLKQANVTTVMTTERTDEYGPIARYGVEEFVSDNVVILRNILEGEKRRRT
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHCE
IEILKLRGTTHMKGEYPFTITNDGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFF
EEEEEECCCCCCCCCCCEEEECCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCEE
KDSIILATGATGTGKTSLVSKFLERGCLDGERCILFAYEESRAQLSRNASSWGIDLEEFE
CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCCCCCHHHHH
RQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSALARGVSQNAFRQFVIGV
HCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMR
HCCCCHHHHCEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSWHDKGIREYLISNAGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQALEEEG
CCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure
MNQSLGPSEPEKPQDNTAEDSTEPTPDNHRADLSELRGIPKKQTGIEGFEDISHGGLPLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHCCCCCHHHHCCCCCCCC
RTTLVSGTSGTGKTLFAMQFLYNGIVKYQEPGIFVTFEETPADIIRNASSFGWDLQALID
CEEEEECCCCCCHHHHHHHHHHHCHHEECCCCEEEEECCCHHHHHHCCHHCCCHHHHHHC
RGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKAKRVSIDSVTAIFQQYDPAGV
CCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHH
VRRELFRLTARLKQANVTTVMTTERTDEYGPIARYGVEEFVSDNVVILRNILEGEKRRRT
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHCE
IEILKLRGTTHMKGEYPFTITNDGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFF
EEEEEECCCCCCCCCCCEEEECCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCEE
KDSIILATGATGTGKTSLVSKFLERGCLDGERCILFAYEESRAQLSRNASSWGIDLEEFE
CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCCCCCHHHHH
RQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSALARGVSQNAFRQFVIGV
HCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMR
HCCCCHHHHCEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSWHDKGIREYLISNAGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQALEEEG
CCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12477935