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The map label for this gene is psbA-3 [H]

Identifier: 86607929

GI number: 86607929

Start: 443947

End: 445011

Strand: Reverse

Name: psbA-3 [H]

Synonym: CYB_0433

Alternate gene names: 86607929

Gene position: 445011-443947 (Counterclockwise)

Preceding gene: 86607936

Following gene: 86607928

Centisome position: 14.61

GC content: 58.03

Gene sequence:

>1065_bases
ATGACTACTGTTATCCAACGTCGCTCAACCAGCAACGTGTGGGAGCAGTTCTGCGAGTGGGTCACCTCCACCGATAACCG
CCTTTACATTGGCTGGTTTGGGGTGCTGATGATTCCCACCCTCCTGACTGCCACCACCTGCTTTATCATCGCCTTCATTG
GGGCTCCGCCGGTGGACATTGACGGCATCCGCGAGCCCGTTTCTGGTTCCTTGCTGTACGGGAACAACATCATTTCTGGG
GCTGTAGTGCCCTCTTCGGCAGCCATTGGCCTGCACTTTTACCCGATTTGGGAAGCCGCCTCACTGGACGAGTGGCTGTA
CAACGGCGGTCCGTACCAGCTGATTGTGCTGCACTTTTTGATTGGGGTGTTCTGCTACATGGGACGCGAATGGGAGCTGA
GCTACCGTTTGGGGATGCGGCCCTGGATTGCGGTGGCTTACTCGGCGCCCGTGGCAGCGGCCACAGCAGTGTTTTTGATT
TACCCGATTGGGCAGGGGTCGTTCTCGGATGGGATGCCCCTGGGGATTTCGGGGACCTTCAACTTCATGCTGGTGTTCCA
GGCAGAGCACAACATCCTGATGCACCCGTTCCACCAGCTGGGCGTGGCTGGCGTGTTTGGGGGTGCGCTGTTTAGTGCCA
TGCACGGGTCGTTGGTGACCTCGAGCCTGATTCGGGAGACCTCGGAAGAGGAGTCTCAGAACCTGGGGTACAAGTTTGGG
CAAGAGGAAGAGACCTACAACATTGTGGCGGCGCACGGGTATTTTGGCCGGTTGATTTTCCAGTATGCGTCGTTCAACAA
CAGCCGGAGCCTGCACTTTTTCCTGGCGGCTTGGCCGGTGATTGGGATTTGGTTTACGGCGCTGGGGATCAGCATCATGG
CGTTCAACCTGAACGGGTTCAACTTCAACCAGTCGATTGTGGACAGCAACGGTCGAGTGGTTGGGACGTGGGCTGATGTG
CTGAACCGTGCCAACCTGGGGATGGAAGTGATGCACGAGCGGAATGCGCACAACTTCCCGCTGGATTTGGCGGCGGTGGA
GGTAGCGCCTGCGGTGCGTGGCTGA

Upstream 100 bases:

>100_bases
ATGGCCTCTCTCAGGATCAAAAAAGGTGGTTGACGAAACTTAACGGATGTTTTAAGTTTAGGTTGTCAATCTTCGCACTT
CCTCAGGGAAGTTTGTTCTC

Downstream 100 bases:

>100_bases
TGGCCTGACCTGACGCTTCAACAGCATTGGTGGATCCCCCGGCTTGGTCTGGGGGATTTTTTTGTTCTCTTTGCTGGGGT
GATCTTTCCCAGAGCTTTTC

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 1; Photosystem II protein D1 1 [H]

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MTTVIQRRSTSNVWEQFCEWVTSTDNRLYIGWFGVLMIPTLLTATTCFIIAFIGAPPVDIDGIREPVSGSLLYGNNIISG
AVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLI
YPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGALFSAMHGSLVTSSLIRETSEEESQNLGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISIMAFNLNGFNFNQSIVDSNGRVVGTWADV
LNRANLGMEVMHERNAHNFPLDLAAVEVAPAVRG

Sequences:

>Translated_354_residues
MTTVIQRRSTSNVWEQFCEWVTSTDNRLYIGWFGVLMIPTLLTATTCFIIAFIGAPPVDIDGIREPVSGSLLYGNNIISG
AVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLI
YPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGALFSAMHGSLVTSSLIRETSEEESQNLGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISIMAFNLNGFNFNQSIVDSNGRVVGTWADV
LNRANLGMEVMHERNAHNFPLDLAAVEVAPAVRG
>Mature_353_residues
TTVIQRRSTSNVWEQFCEWVTSTDNRLYIGWFGVLMIPTLLTATTCFIIAFIGAPPVDIDGIREPVSGSLLYGNNIISGA
VVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIY
PIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHQLGVAGVFGGALFSAMHGSLVTSSLIRETSEEESQNLGYKFGQ
EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISIMAFNLNGFNFNQSIVDSNGRVVGTWADVL
NRANLGMEVMHERNAHNFPLDLAAVEVAPAVRG

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39052; Mature: 38921

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVIQRRSTSNVWEQFCEWVTSTDNRLYIGWFGVLMIPTLLTATTCFIIAFIGAPPVDI
CCCEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGIREPVSGSLLYGNNIISGAVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFL
CCCCCCCCCCEEECCCEEECCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMLVFQAEHNILMHPFHQLGVAGVFGGALFSAMHGSLVTSSLIRETSEEESQNLGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISIMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEEECCCC
NFNQSIVDSNGRVVGTWADVLNRANLGMEVMHERNAHNFPLDLAAVEVAPAVRG
CCCHHHCCCCCEEEEEHHHHHHHCCCCHHHHHHCCCCCCCCCHHHEEECCCCCC
>Mature Secondary Structure 
TTVIQRRSTSNVWEQFCEWVTSTDNRLYIGWFGVLMIPTLLTATTCFIIAFIGAPPVDI
CCEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DGIREPVSGSLLYGNNIISGAVVPSSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFL
CCCCCCCCCCEEECCCEEECCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHH
IGVFCYMGREWELSYRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMLVFQAEHNILMHPFHQLGVAGVFGGALFSAMHGSLVTSSLIRETSEEESQNLGYKFG
EEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISIMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEEECCCC
NFNQSIVDSNGRVVGTWADVLNRANLGMEVMHERNAHNFPLDLAAVEVAPAVRG
CCCHHHCCCCCEEEEEHHHHHHHCCCCHHHHHHCCCCCCCCCHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA