| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607904
Identifier: 86607904
GI number: 86607904
Start: 419275
End: 419538
Strand: Reverse
Name: 86607904
Synonym: CYB_0407
Alternate gene names: NA
Gene position: 419538-419275 (Counterclockwise)
Preceding gene: 86607905
Following gene: 86607903
Centisome position: 13.77
GC content: 56.82
Gene sequence:
>264_bases ATGTTGAATGAGAGTGACGTTGAGAATGTTGTGAACGGCCTGGATTTCGAGCCCTTTGAACACCTGTCTGCCGACCAGCT CCGCACCGAGATCAAACGACTAAACAGCAAAGCAGGCCAACTGAAAATGGATCTGCACGATCTGGCCGAGGGGCTACCCG ACGGGTTCGAGCGACTCCCCGACTTGGCAGCCCGCACCTATGCCCTGTTTGCCCGGCTGCACACCCTCAGACAACGCTTG AAAACCCTGGAGACCTGCCGATGA
Upstream 100 bases:
>100_bases GGCCCGAACCTACCCTGAGGTGGGCCGACTGTAGCCGCTTGTCTCCGTCCCGGCAGCCATTTTTTCTTCTTTTTCTTCAG CAATTAGGAGTGCCTTGCCC
Downstream 100 bases:
>100_bases GTTGGAACCACAACCGCCGTTGGAAAGACTTCCAAGCCCTAGTCAATGCCGAGGATTATTTCGCTTTTTTCGAGCTCCCC TACGATCCGCGGGTGGTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 87; Mature: 87
Protein sequence:
>87_residues MLNESDVENVVNGLDFEPFEHLSADQLRTEIKRLNSKAGQLKMDLHDLAEGLPDGFERLPDLAARTYALFARLHTLRQRL KTLETCR
Sequences:
>Translated_87_residues MLNESDVENVVNGLDFEPFEHLSADQLRTEIKRLNSKAGQLKMDLHDLAEGLPDGFERLPDLAARTYALFARLHTLRQRL KTLETCR >Mature_87_residues MLNESDVENVVNGLDFEPFEHLSADQLRTEIKRLNSKAGQLKMDLHDLAEGLPDGFERLPDLAARTYALFARLHTLRQRL KTLETCR
Specific function: Unknown
COG id: COG5420
COG function: function code S; Uncharacterized conserved small protein containing a coiled-coil domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0437 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007774 [H]
Pfam domain/function: PF05082 DUF683 [H]
EC number: NA
Molecular weight: Translated: 9994; Mature: 9994
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNESDVENVVNGLDFEPFEHLSADQLRTEIKRLNSKAGQLKMDLHDLAEGLPDGFERLP CCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH DLAARTYALFARLHTLRQRLKTLETCR HHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLNESDVENVVNGLDFEPFEHLSADQLRTEIKRLNSKAGQLKMDLHDLAEGLPDGFERLP CCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH DLAARTYALFARLHTLRQRLKTLETCR HHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]