| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is hflX [H]
Identifier: 86607879
GI number: 86607879
Start: 398116
End: 399882
Strand: Reverse
Name: hflX [H]
Synonym: CYB_0382
Alternate gene names: 86607879
Gene position: 399882-398116 (Counterclockwise)
Preceding gene: 86607881
Following gene: 86607878
Centisome position: 13.13
GC content: 63.1
Gene sequence:
>1767_bases ATGCCCAGGGCTAGCACCTCTCGCCATCAGACCGACCCCCGCTTCAGCTCTGCTATCGCTCCACGACGCTTTCCCGAACA GGCCAAAGGGTTAAAGCCCCACCAACAAAAGCAACTGCAACGGCTCTATCAACTGCGCCTACCCCCCGACCGCTTGGTGA CGGTGGAGTTTGCCCAACGGCTGGGATCCCTGACCCAAGATCTGGAAGGTCAGCCCATCAGCGTTTACCTCAACCGGCGC GGCCAGGTGATCCGCGTAGGGGTGGGATCCCCTTTTGAAACCCAGATTCCCGCTTGGGAATTGCCCCGCCAGGGGGCCGA GCGCCTATCCGGGATCCGCTGCATCACCACCCAAATGGGGGAGGGGGGCCCCGGTCAAAAAGCGCTGACGGCCATGGCTT TGCAGCGTTTGGATGCCCTCATCACCCTTTCCGTGTCCAAGTCAGGAGGGCACCGACGCCGGGGAGGAGCGGCTACGGGC TTTGTTCACCGGGCCTATCTGGCCCATCTGCTGCCGGAGGGAGAGCGCCGTTGGCAGGTTTCTGAGCCTTTGCCTTTGGG GATCCTGGCGGAACAGGATCTGCAGGAGCTGGTGGCGGAGCTAGAAGATGGCTTTCGGCGCCAAGTGACCGCCCGCCAGG TGGATCTGGATCAGGATCGGGCCATCCTGGTGGGGCTGCAGGAGTCCGGGCAGAGCTACGAGGATCTCATGGATGGGTTG GCGGAGCTGAGCCGCCTGGTGGAGAGTGCCGGCGGACAGGTGCTGCAAGCCCTCTGGCAGAGGCGGGAAGGCCCCAATTC GGCCACGGTAATCGGATCCGGTAAGGTGCAAGAGCTGGCTCTGCTGGTCCAGGATCTGGGCGCTAACTTGGTGGTGTTCG ACCGGGAACTCACCCCCAGCCAGGTGCGCACCTTGGAAGAGGCGGTGGGGGTGCGGGTGGTGGATCGCAGCGAGGTGATC CTGGATATTTTTGCCCAGCGGGCCAGAACCCGAGCCGGGAAGCTGCAGGTGGAGCTGGCGCAACTGCAGTATTTGCTGCC TCGCCTGGCCGGTCGCGGTCGCACCATGTCTCGGTTAGGTGGGGGCATCGGCACCCGTGGCCCTGGGGAAACCCAACTGG AAATGGAGCGGCGGGCCATCCAGCGGCGCATCAGCAAGCTGCGGCAAGAGGTGGAAGAGCTGCGCCGCCACCGCCAGCGG CTGCGCCAACGGCGCGAGGCATCCCAAATTCCCGTGGTGGCCCTGGTGGGCTACACCAACGCCGGCAAATCCACCCTCCT CAATGCCCTCACCCATGCCCAGGTCTACGTGGCCGACCAACTCTTTGCCACCTTGGATCCCACCACGCGGCGGCTGGAGC TGCCCGACCAGCAGGCGGTGCTGTTGACCGACACAGTGGGATTCCTAACCGAATTACCAGACCAACTGGTGGATGCCTTT CAAGCCACCCTGGAAGAGGTGACGGAAGCGGATGCCCTGCTGCATGTGGTGGATCTGTCTCACCCCAACTGGGAAGGACA GATCGAGGCGGTGGAAACCTTGCTGGACAAGCTGCCCTTGGCCACCGGCCCCCGGCAACTGGTGTTCAACAAAATCGACC GCCTGGATCCCGAATGGGTAGAGGATGTGCGCCTGCTCTACCCCAAAGCCCTGTTTGTTTCCGCCACCACCGGCCAAAAC CTGGATCAGTTGCACCACACCCTGGCCCAATTTGCTGCAGTTCTAAGCCCCAACCCCTTCGATAGTCAGGAACCCAAGGA TCCCTAA
Upstream 100 bases:
>100_bases GGGCCAGTGTTTGCCACCGTTGCTTTTGGATCCCAAGTTCCTGCGGGCAGCTAGCGTGTATGGTAGATGAAAGCTTGTTT TTGGGTCTTTCCCCGTCCCT
Downstream 100 bases:
>100_bases AAGCATTCCATAAGGATTTCCAAACCTGCATAGCTCATCTTCATCCGCCGTCAACATAAACATTCAGTTACATTGAGATC AGGATTGTGACCCGACTTAA
Product: GTP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 588; Mature: 587
Protein sequence:
>588_residues MPRASTSRHQTDPRFSSAIAPRRFPEQAKGLKPHQQKQLQRLYQLRLPPDRLVTVEFAQRLGSLTQDLEGQPISVYLNRR GQVIRVGVGSPFETQIPAWELPRQGAERLSGIRCITTQMGEGGPGQKALTAMALQRLDALITLSVSKSGGHRRRGGAATG FVHRAYLAHLLPEGERRWQVSEPLPLGILAEQDLQELVAELEDGFRRQVTARQVDLDQDRAILVGLQESGQSYEDLMDGL AELSRLVESAGGQVLQALWQRREGPNSATVIGSGKVQELALLVQDLGANLVVFDRELTPSQVRTLEEAVGVRVVDRSEVI LDIFAQRARTRAGKLQVELAQLQYLLPRLAGRGRTMSRLGGGIGTRGPGETQLEMERRAIQRRISKLRQEVEELRRHRQR LRQRREASQIPVVALVGYTNAGKSTLLNALTHAQVYVADQLFATLDPTTRRLELPDQQAVLLTDTVGFLTELPDQLVDAF QATLEEVTEADALLHVVDLSHPNWEGQIEAVETLLDKLPLATGPRQLVFNKIDRLDPEWVEDVRLLYPKALFVSATTGQN LDQLHHTLAQFAAVLSPNPFDSQEPKDP
Sequences:
>Translated_588_residues MPRASTSRHQTDPRFSSAIAPRRFPEQAKGLKPHQQKQLQRLYQLRLPPDRLVTVEFAQRLGSLTQDLEGQPISVYLNRR GQVIRVGVGSPFETQIPAWELPRQGAERLSGIRCITTQMGEGGPGQKALTAMALQRLDALITLSVSKSGGHRRRGGAATG FVHRAYLAHLLPEGERRWQVSEPLPLGILAEQDLQELVAELEDGFRRQVTARQVDLDQDRAILVGLQESGQSYEDLMDGL AELSRLVESAGGQVLQALWQRREGPNSATVIGSGKVQELALLVQDLGANLVVFDRELTPSQVRTLEEAVGVRVVDRSEVI LDIFAQRARTRAGKLQVELAQLQYLLPRLAGRGRTMSRLGGGIGTRGPGETQLEMERRAIQRRISKLRQEVEELRRHRQR LRQRREASQIPVVALVGYTNAGKSTLLNALTHAQVYVADQLFATLDPTTRRLELPDQQAVLLTDTVGFLTELPDQLVDAF QATLEEVTEADALLHVVDLSHPNWEGQIEAVETLLDKLPLATGPRQLVFNKIDRLDPEWVEDVRLLYPKALFVSATTGQN LDQLHHTLAQFAAVLSPNPFDSQEPKDP >Mature_587_residues PRASTSRHQTDPRFSSAIAPRRFPEQAKGLKPHQQKQLQRLYQLRLPPDRLVTVEFAQRLGSLTQDLEGQPISVYLNRRG QVIRVGVGSPFETQIPAWELPRQGAERLSGIRCITTQMGEGGPGQKALTAMALQRLDALITLSVSKSGGHRRRGGAATGF VHRAYLAHLLPEGERRWQVSEPLPLGILAEQDLQELVAELEDGFRRQVTARQVDLDQDRAILVGLQESGQSYEDLMDGLA ELSRLVESAGGQVLQALWQRREGPNSATVIGSGKVQELALLVQDLGANLVVFDRELTPSQVRTLEEAVGVRVVDRSEVIL DIFAQRARTRAGKLQVELAQLQYLLPRLAGRGRTMSRLGGGIGTRGPGETQLEMERRAIQRRISKLRQEVEELRRHRQRL RQRREASQIPVVALVGYTNAGKSTLLNALTHAQVYVADQLFATLDPTTRRLELPDQQAVLLTDTVGFLTELPDQLVDAFQ ATLEEVTEADALLHVVDLSHPNWEGQIEAVETLLDKLPLATGPRQLVFNKIDRLDPEWVEDVRLLYPKALFVSATTGQNL DQLHHTLAQFAAVLSPNPFDSQEPKDP
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=240, Percent_Identity=39.1666666666667, Blast_Score=138, Evalue=2e-32, Organism=Homo sapiens, GI310133116, Length=232, Percent_Identity=39.6551724137931, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI310124269, Length=216, Percent_Identity=40.7407407407407, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI310124267, Length=216, Percent_Identity=40.7407407407407, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI310124171, Length=216, Percent_Identity=40.7407407407407, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI310124169, Length=216, Percent_Identity=40.7407407407407, Blast_Score=133, Evalue=5e-31, Organism=Escherichia coli, GI1790615, Length=337, Percent_Identity=47.1810089020772, Blast_Score=280, Evalue=2e-76, Organism=Escherichia coli, GI1789574, Length=189, Percent_Identity=29.1005291005291, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17561038, Length=217, Percent_Identity=35.4838709677419, Blast_Score=125, Evalue=8e-29, Organism=Drosophila melanogaster, GI24650079, Length=353, Percent_Identity=35.6940509915014, Blast_Score=139, Evalue=6e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 65461; Mature: 65329
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRASTSRHQTDPRFSSAIAPRRFPEQAKGLKPHQQKQLQRLYQLRLPPDRLVTVEFAQR CCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHEEHHHHHHH LGSLTQDLEGQPISVYLNRRGQVIRVGVGSPFETQIPAWELPRQGAERLSGIRCITTQMG HHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHCCHHHHHHHCCCEEEEEECC EGGPGQKALTAMALQRLDALITLSVSKSGGHRRRGGAATGFVHRAYLAHLLPEGERRWQV CCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEC SEPLPLGILAEQDLQELVAELEDGFRRQVTARQVDLDQDRAILVGLQESGQSYEDLMDGL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCHHHHHHHH AELSRLVESAGGQVLQALWQRREGPNSATVIGSGKVQELALLVQDLGANLVVFDRELTPS HHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCHH QVRTLEEAVGVRVVDRSEVILDIFAQRARTRAGKLQVELAQLQYLLPRLAGRGRTMSRLG HHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHC GGIGTRGPGETQLEMERRAIQRRISKLRQEVEELRRHRQRLRQRREASQIPVVALVGYTN CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC AGKSTLLNALTHAQVYVADQLFATLDPTTRRLELPDQQAVLLTDTVGFLTELPDQLVDAF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEHHHHHHHHCHHHHHHHH QATLEEVTEADALLHVVDLSHPNWEGQIEAVETLLDKLPLATGPRQLVFNKIDRLDPEWV HHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHH EDVRLLYPKALFVSATTGQNLDQLHHTLAQFAAVLSPNPFDSQEPKDP HHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PRASTSRHQTDPRFSSAIAPRRFPEQAKGLKPHQQKQLQRLYQLRLPPDRLVTVEFAQR CCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCHHEEHHHHHHH LGSLTQDLEGQPISVYLNRRGQVIRVGVGSPFETQIPAWELPRQGAERLSGIRCITTQMG HHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCCHHCCHHHHHHHCCCEEEEEECC EGGPGQKALTAMALQRLDALITLSVSKSGGHRRRGGAATGFVHRAYLAHLLPEGERRWQV CCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEC SEPLPLGILAEQDLQELVAELEDGFRRQVTARQVDLDQDRAILVGLQESGQSYEDLMDGL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCHHHHHHHH AELSRLVESAGGQVLQALWQRREGPNSATVIGSGKVQELALLVQDLGANLVVFDRELTPS HHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCHH QVRTLEEAVGVRVVDRSEVILDIFAQRARTRAGKLQVELAQLQYLLPRLAGRGRTMSRLG HHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHC GGIGTRGPGETQLEMERRAIQRRISKLRQEVEELRRHRQRLRQRREASQIPVVALVGYTN CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCC AGKSTLLNALTHAQVYVADQLFATLDPTTRRLELPDQQAVLLTDTVGFLTELPDQLVDAF CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEHHHHHHHHCHHHHHHHH QATLEEVTEADALLHVVDLSHPNWEGQIEAVETLLDKLPLATGPRQLVFNKIDRLDPEWV HHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHH EDVRLLYPKALFVSATTGQNLDQLHHTLAQFAAVLSPNPFDSQEPKDP HHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]