| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607873
Identifier: 86607873
GI number: 86607873
Start: 390961
End: 393057
Strand: Direct
Name: 86607873
Synonym: CYB_0376
Alternate gene names: NA
Gene position: 390961-393057 (Clockwise)
Preceding gene: 86607872
Following gene: 86607874
Centisome position: 12.83
GC content: 60.99
Gene sequence:
>2097_bases GTGCTTACTTCCCTTTACTACCGCGAGATCCCTTGCCCCGATAGTGCTCAAGTGCTGCGCTGGCTACAGGAGTGTATCCC CCTGCCCCAAGGCAGCCAGAAGGTTCTTACCCCCACGGGCCTGCGCCTACAGGGATCCGGCGCTGAGCTGGCCCTTTTCT TGTGGTCGGGGCTGAACACTACCTATCTCAAGGTGTTCCAGTGGTCGGAACAGCCCTTCCCCCGCCAAGCTCGCTGGCTG GGAGAGCTGGAACAGGCCATCCAAAGCCAATTTCCCCACCGCTACCCGCAGTTGCCCCAGATCGACCTGAACCGGGGATC CATCTTCGATCAGCTTGAGCCTTTCTACCCGCAAACGGTGAAGTATTTTCGGCGGATCCCCAATGGAGAATTTGACCTGC AGCGGGTGTACTGGTGGGAAAAGCGCTGGCGGGAAGAAGTGCAACATTGCCACGCAGCCCACCGCCCTGCTCAGCCGGTC TTGTTTCGCCAGCCTGGCCCTGAGCCGGCCCCGGTGGAGTGGGATCTGGCCATCGTGGGAGGAGCGCTGGGAGCCATCTA TGGAGCGGCCATGGCTCGCTTGGGCTACCGCGTGGCCTTGGTGGAGCGACTCCCTTTTGGCCGCATGAACCGCGAGTGGA ACATCTCCCGGCGGGAGCTGCAAACCCTGGTGGATTTGGGCCTTTTGAGCGCCGAGCAGATGGAGAGCTTGATCCTGCGG GAATACACGGATGGGTTCAACAAGTTTTTTGACGGCAATAGCCCGGTTCGCGCTCCCGTTTTGCACACGCCGACGGTACT CAATCTGGCCATTGACGCGGAAAAGCTATTGCAGCTCTGTGGCCAAATTCTCACTTCCTGCGGGGGAGCTATCTACGAGC GCACCGAGTTTCAGCGGGCCTATGTTGGCGAACAAGGCGTCACGCTGGTTTTGAAGGATTTGCCCACCGGCGAGGAGTTT CGGCTGGGATCCCGCCTTGTGGTGGATGCTATGGGAACAGTCTCTCCCATTGCCCAGCAGCTTTACCGCCATCGGGCTTT TGATAGCGTCTGCCCCACGGTGGGGGCTACCATTGCGGGGGGGTTTGAGCCAGGGGTATGGGATCCCCAGTTTGGGGACA TTCTGGCCAGCCACGGGGACATCAGCCGCGGTCGGCAACTCATTTGGGAGCTGTTCCCCGGCCCAGGCGAAGATCTTACC TTTTATCTGTTCCACTACCACCAGGTGCATCCGGAAAACCCCGGATCCCTGCTGGAACTGTACGAAGATTTTTTCACCAT TCTGCCGGAATACCGCCGCTGCGACCCGGAGCGCCTGCAGTGGAAAAAAGCGACCTTCGGCTATATCCCCGGACGATTTG GCCAGCCCCGGCACCCTGTTCGCGGCAGCGGGGCGGAGTCTTCGGAACCCTTTGACCGGATACTGCTCATAGGGGATGCG GCGGCTATGCAATCGCCCCTTAGCTTTACCGGCTTTGGATCCCTGGTGCGCAACTGCCCCCGCCTGTGCGATCTGCTGGA TACGGCGCTGCGCCACGACCTGCTCAGGGCTGCAGACTTAGCCCAGATCCGGGCCTACCAGGGCAACTCCGCCGTCACCT GGCTCTTCTCGCGGGGGATGATGGTGCCCACCGGCAAGGTGCTGCCCCCCGAGCGCATCAATGCCACTCTCAACAGCTTT TTCGGCATTCTCGCCACCGAGCCGCCGGAGGTGGTGGACGATTTCATCAAAGACCGGGCTGGCTGGCTGGCCTTTAACCG CATGGCCATCAAAGCTGCCCTGCAAAACCCACGGCTGCTGCTGTGGATCTGGGAGGCCGTAGGGGCCAAAGGCTTTGCCC AGTGGCTACCCACCTACCTCAGCTATACCGGCCTGGCCTTGACCTCTGCTTTGCTCAGGGGCTGGCTTCCAAATCTGCTG CGTCGCCTGCAGCCCTGGCTAGAAGCGCGTTACCCCCGCCTGTGGCTGCGCTGCCTGCAGTGGAGCTACACCCTCACCTA TGGGGTAGGGCAGCCGCGCATCCAGTTTCAACTCCCCCCCACTCAAGAAAAGACCCAAGACGCAATACCGACTTGGGTAG GATCCCTGCAGCAGTGA
Upstream 100 bases:
>100_bases GGGGAAACCTGGGTAGGGGGTGATCCCTGGGATCGGCAAAGGGAGGGATCCCCTCATGTCACAATGGGTAAAGATTTGCT CGGTTTCTTATCTCGGCGCC
Downstream 100 bases:
>100_bases CATACTCCCGCACTCACGCTGATGCACAGAGGGCGGGGCTCCCCGGCGGTCTAGCTAAATGCACCGGACACCAAGGCAAT AGCGCTGTCGCCGTGATCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MLTSLYYREIPCPDSAQVLRWLQECIPLPQGSQKVLTPTGLRLQGSGAELALFLWSGLNTTYLKVFQWSEQPFPRQARWL GELEQAIQSQFPHRYPQLPQIDLNRGSIFDQLEPFYPQTVKYFRRIPNGEFDLQRVYWWEKRWREEVQHCHAAHRPAQPV LFRQPGPEPAPVEWDLAIVGGALGAIYGAAMARLGYRVALVERLPFGRMNREWNISRRELQTLVDLGLLSAEQMESLILR EYTDGFNKFFDGNSPVRAPVLHTPTVLNLAIDAEKLLQLCGQILTSCGGAIYERTEFQRAYVGEQGVTLVLKDLPTGEEF RLGSRLVVDAMGTVSPIAQQLYRHRAFDSVCPTVGATIAGGFEPGVWDPQFGDILASHGDISRGRQLIWELFPGPGEDLT FYLFHYHQVHPENPGSLLELYEDFFTILPEYRRCDPERLQWKKATFGYIPGRFGQPRHPVRGSGAESSEPFDRILLIGDA AAMQSPLSFTGFGSLVRNCPRLCDLLDTALRHDLLRAADLAQIRAYQGNSAVTWLFSRGMMVPTGKVLPPERINATLNSF FGILATEPPEVVDDFIKDRAGWLAFNRMAIKAALQNPRLLLWIWEAVGAKGFAQWLPTYLSYTGLALTSALLRGWLPNLL RRLQPWLEARYPRLWLRCLQWSYTLTYGVGQPRIQFQLPPTQEKTQDAIPTWVGSLQQ
Sequences:
>Translated_698_residues MLTSLYYREIPCPDSAQVLRWLQECIPLPQGSQKVLTPTGLRLQGSGAELALFLWSGLNTTYLKVFQWSEQPFPRQARWL GELEQAIQSQFPHRYPQLPQIDLNRGSIFDQLEPFYPQTVKYFRRIPNGEFDLQRVYWWEKRWREEVQHCHAAHRPAQPV LFRQPGPEPAPVEWDLAIVGGALGAIYGAAMARLGYRVALVERLPFGRMNREWNISRRELQTLVDLGLLSAEQMESLILR EYTDGFNKFFDGNSPVRAPVLHTPTVLNLAIDAEKLLQLCGQILTSCGGAIYERTEFQRAYVGEQGVTLVLKDLPTGEEF RLGSRLVVDAMGTVSPIAQQLYRHRAFDSVCPTVGATIAGGFEPGVWDPQFGDILASHGDISRGRQLIWELFPGPGEDLT FYLFHYHQVHPENPGSLLELYEDFFTILPEYRRCDPERLQWKKATFGYIPGRFGQPRHPVRGSGAESSEPFDRILLIGDA AAMQSPLSFTGFGSLVRNCPRLCDLLDTALRHDLLRAADLAQIRAYQGNSAVTWLFSRGMMVPTGKVLPPERINATLNSF FGILATEPPEVVDDFIKDRAGWLAFNRMAIKAALQNPRLLLWIWEAVGAKGFAQWLPTYLSYTGLALTSALLRGWLPNLL RRLQPWLEARYPRLWLRCLQWSYTLTYGVGQPRIQFQLPPTQEKTQDAIPTWVGSLQQ >Mature_698_residues MLTSLYYREIPCPDSAQVLRWLQECIPLPQGSQKVLTPTGLRLQGSGAELALFLWSGLNTTYLKVFQWSEQPFPRQARWL GELEQAIQSQFPHRYPQLPQIDLNRGSIFDQLEPFYPQTVKYFRRIPNGEFDLQRVYWWEKRWREEVQHCHAAHRPAQPV LFRQPGPEPAPVEWDLAIVGGALGAIYGAAMARLGYRVALVERLPFGRMNREWNISRRELQTLVDLGLLSAEQMESLILR EYTDGFNKFFDGNSPVRAPVLHTPTVLNLAIDAEKLLQLCGQILTSCGGAIYERTEFQRAYVGEQGVTLVLKDLPTGEEF RLGSRLVVDAMGTVSPIAQQLYRHRAFDSVCPTVGATIAGGFEPGVWDPQFGDILASHGDISRGRQLIWELFPGPGEDLT FYLFHYHQVHPENPGSLLELYEDFFTILPEYRRCDPERLQWKKATFGYIPGRFGQPRHPVRGSGAESSEPFDRILLIGDA AAMQSPLSFTGFGSLVRNCPRLCDLLDTALRHDLLRAADLAQIRAYQGNSAVTWLFSRGMMVPTGKVLPPERINATLNSF FGILATEPPEVVDDFIKDRAGWLAFNRMAIKAALQNPRLLLWIWEAVGAKGFAQWLPTYLSYTGLALTSALLRGWLPNLL RRLQPWLEARYPRLWLRCLQWSYTLTYGVGQPRIQFQLPPTQEKTQDAIPTWVGSLQQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79367; Mature: 79367
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTSLYYREIPCPDSAQVLRWLQECIPLPQGSQKVLTPTGLRLQGSGAELALFLWSGLNT CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCEEEEEEECCCCH TYLKVFQWSEQPFPRQARWLGELEQAIQSQFPHRYPQLPQIDLNRGSIFDQLEPFYPQTV HEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHCCCCCHHHH KYFRRIPNGEFDLQRVYWWEKRWREEVQHCHAAHRPAQPVLFRQPGPEPAPVEWDLAIVG HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEHHHHH GALGAIYGAAMARLGYRVALVERLPFGRMNREWNISRRELQTLVDLGLLSAEQMESLILR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH EYTDGFNKFFDGNSPVRAPVLHTPTVLNLAIDAEKLLQLCGQILTSCGGAIYERTEFQRA HHHHHHHHHCCCCCCCCCCEECCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHH YVGEQGVTLVLKDLPTGEEFRLGSRLVVDAMGTVSPIAQQLYRHRAFDSVCPTVGATIAG HCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFEPGVWDPQFGDILASHGDISRGRQLIWELFPGPGEDLTFYLFHYHQVHPENPGSLLEL CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHH YEDFFTILPEYRRCDPERLQWKKATFGYIPGRFGQPRHPVRGSGAESSEPFDRILLIGDA HHHHHHHCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECH AAMQSPLSFTGFGSLVRNCPRLCDLLDTALRHDLLRAADLAQIRAYQGNSAVTWLFSRGM HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCE MVPTGKVLPPERINATLNSFFGILATEPPEVVDDFIKDRAGWLAFNRMAIKAALQNPRLL ECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LWIWEAVGAKGFAQWLPTYLSYTGLALTSALLRGWLPNLLRRLQPWLEARYPRLWLRCLQ EEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WSYTLTYGVGQPRIQFQLPPTQEKTQDAIPTWVGSLQQ HHEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MLTSLYYREIPCPDSAQVLRWLQECIPLPQGSQKVLTPTGLRLQGSGAELALFLWSGLNT CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCEEEEEEECCCCH TYLKVFQWSEQPFPRQARWLGELEQAIQSQFPHRYPQLPQIDLNRGSIFDQLEPFYPQTV HEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHHHHCCCCCHHHH KYFRRIPNGEFDLQRVYWWEKRWREEVQHCHAAHRPAQPVLFRQPGPEPAPVEWDLAIVG HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEHHHHH GALGAIYGAAMARLGYRVALVERLPFGRMNREWNISRRELQTLVDLGLLSAEQMESLILR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH EYTDGFNKFFDGNSPVRAPVLHTPTVLNLAIDAEKLLQLCGQILTSCGGAIYERTEFQRA HHHHHHHHHCCCCCCCCCCEECCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHH YVGEQGVTLVLKDLPTGEEFRLGSRLVVDAMGTVSPIAQQLYRHRAFDSVCPTVGATIAG HCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GFEPGVWDPQFGDILASHGDISRGRQLIWELFPGPGEDLTFYLFHYHQVHPENPGSLLEL CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHH YEDFFTILPEYRRCDPERLQWKKATFGYIPGRFGQPRHPVRGSGAESSEPFDRILLIGDA HHHHHHHCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECH AAMQSPLSFTGFGSLVRNCPRLCDLLDTALRHDLLRAADLAQIRAYQGNSAVTWLFSRGM HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCE MVPTGKVLPPERINATLNSFFGILATEPPEVVDDFIKDRAGWLAFNRMAIKAALQNPRLL ECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LWIWEAVGAKGFAQWLPTYLSYTGLALTSALLRGWLPNLLRRLQPWLEARYPRLWLRCLQ EEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH WSYTLTYGVGQPRIQFQLPPTQEKTQDAIPTWVGSLQQ HHEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA