| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is cdsA [H]
Identifier: 86607799
GI number: 86607799
Start: 311919
End: 312731
Strand: Direct
Name: cdsA [H]
Synonym: CYB_0300
Alternate gene names: 86607799
Gene position: 311919-312731 (Clockwise)
Preceding gene: 86607796
Following gene: 86607800
Centisome position: 10.24
GC content: 57.07
Gene sequence:
>813_bases ATGGGAGCCCGTTGGGTTAGCGGTTTTGCGGCGGTGTTGTTTGCGTTGGCGGTCACCCTGCTAGGGGGCTGGTATTTTAC TGCAGCCATTGGGCTGATCATTTTTTTGGCCCAGTTGGAGTTTTTTCGCTTGGTGCAAGCCAAAGGCAATGCGCCGGCCA TGCGCACCACCATGTTTTCCAGCCAGGTGCTGGTGATTTTGCAGCAGGTGAGGCCGGAGTGGACCAGCCCTGCCTTTATC GTGGCGGGATCCATCATCTGTTTTTATTTGCTCTTTAAGCCCAAGGTGGCCACCATTGCCGATATTGCCACCTCGATTTT GGGGTTGTTCTACTGTGCGTTGCTGCCCAGCTTCTGGATTCGGGTCAGGGCCTTGTCTTTTGCGCAAGGGCTGGGCGAAG GGCTATGGATTACGCTGCTGGCCATTGGCTGCGTGATCGCTGCCGATGTGGGGGCCTACCTGTGTGGTCGGGCCTTTGGG CGCACCAAGCTCTCCATCCTCAGCCCGAAAAAGACGGTGGAAGGGGCAGTAGCCGGCATTGCCGCCAGCATGACCCTTGC GGTGGTTGGAGCCTATTACCTGGGCTGGCCGTGGAGCTGGTTGAGTGGGGGCATTCTGGGGTTTTTGATTGGGTTAACCA GCCTGCTGGGAGATCTCACAGAATCTCTGATGAAACGGGATGCCGGCGTCAAAGATTCCGGGGATCTGATCCCGGGCCAC GGCGGCATTTTGGATCGGGGGGATAGCTACGTATTCACCGGGCCGCTGGTGTTTTATTTTATGGAATGGCTCAACGCTTA CTCTGGGCTGTAG
Upstream 100 bases:
>100_bases AACACCAGAGGGGGGGTTTCTTCTGCTCTCGGCTTGGACGTCGATCTGCTGGAGCCGGGGGCAAGAGGTATTTGGCCAGC CAACGTGACGGGGTGCGCCC
Downstream 100 bases:
>100_bases AGCCAGCTTGCAAGTTTGCCAAACCCAGGAGCGCCCACTAGCCGAAGGTGCGGAAGGCCCTCAATTCAAAATTGCCTGGC ATTCGGGCCGCTCCAAAAAC
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MGARWVSGFAAVLFALAVTLLGGWYFTAAIGLIIFLAQLEFFRLVQAKGNAPAMRTTMFSSQVLVILQQVRPEWTSPAFI VAGSIICFYLLFKPKVATIADIATSILGLFYCALLPSFWIRVRALSFAQGLGEGLWITLLAIGCVIAADVGAYLCGRAFG RTKLSILSPKKTVEGAVAGIAASMTLAVVGAYYLGWPWSWLSGGILGFLIGLTSLLGDLTESLMKRDAGVKDSGDLIPGH GGILDRGDSYVFTGPLVFYFMEWLNAYSGL
Sequences:
>Translated_270_residues MGARWVSGFAAVLFALAVTLLGGWYFTAAIGLIIFLAQLEFFRLVQAKGNAPAMRTTMFSSQVLVILQQVRPEWTSPAFI VAGSIICFYLLFKPKVATIADIATSILGLFYCALLPSFWIRVRALSFAQGLGEGLWITLLAIGCVIAADVGAYLCGRAFG RTKLSILSPKKTVEGAVAGIAASMTLAVVGAYYLGWPWSWLSGGILGFLIGLTSLLGDLTESLMKRDAGVKDSGDLIPGH GGILDRGDSYVFTGPLVFYFMEWLNAYSGL >Mature_269_residues GARWVSGFAAVLFALAVTLLGGWYFTAAIGLIIFLAQLEFFRLVQAKGNAPAMRTTMFSSQVLVILQQVRPEWTSPAFIV AGSIICFYLLFKPKVATIADIATSILGLFYCALLPSFWIRVRALSFAQGLGEGLWITLLAIGCVIAADVGAYLCGRAFGR TKLSILSPKKTVEGAVAGIAASMTLAVVGAYYLGWPWSWLSGGILGFLIGLTSLLGDLTESLMKRDAGVKDSGDLIPGHG GILDRGDSYVFTGPLVFYFMEWLNAYSGL
Specific function: Unknown
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI1787677, Length=118, Percent_Identity=43.2203389830509, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081696, Length=178, Percent_Identity=39.8876404494382, Blast_Score=91, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 28946; Mature: 28814
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGARWVSGFAAVLFALAVTLLGGWYFTAAIGLIIFLAQLEFFRLVQAKGNAPAMRTTMFS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH SQVLVILQQVRPEWTSPAFIVAGSIICFYLLFKPKVATIADIATSILGLFYCALLPSFWI HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH RVRALSFAQGLGEGLWITLLAIGCVIAADVGAYLCGRAFGRTKLSILSPKKTVEGAVAGI HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHCCCHHHHHHHHHHH AASMTLAVVGAYYLGWPWSWLSGGILGFLIGLTSLLGDLTESLMKRDAGVKDSGDLIPGH HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC GGILDRGDSYVFTGPLVFYFMEWLNAYSGL CCCCCCCCCEEEHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GARWVSGFAAVLFALAVTLLGGWYFTAAIGLIIFLAQLEFFRLVQAKGNAPAMRTTMFS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH SQVLVILQQVRPEWTSPAFIVAGSIICFYLLFKPKVATIADIATSILGLFYCALLPSFWI HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH RVRALSFAQGLGEGLWITLLAIGCVIAADVGAYLCGRAFGRTKLSILSPKKTVEGAVAGI HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHCCCHHHHHHHHHHH AASMTLAVVGAYYLGWPWSWLSGGILGFLIGLTSLLGDLTESLMKRDAGVKDSGDLIPGH HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC GGILDRGDSYVFTGPLVFYFMEWLNAYSGL CCCCCCCCCEEEHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]