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The map label for this gene is psbB [H]

Identifier: 86607780

GI number: 86607780

Start: 295732

End: 297264

Strand: Direct

Name: psbB [H]

Synonym: CYB_0281

Alternate gene names: 86607780

Gene position: 295732-297264 (Clockwise)

Preceding gene: 86607778

Following gene: 86607781

Centisome position: 9.71

GC content: 60.4

Gene sequence:

>1533_bases
ATGGGACTACCGTGGTATCGGGTCCATACGGTTGTACTGAATGACCCAGGTCGCCTGATCGCGGTTCACCTGATGCATAC
CGCTCTGGTAGCAGGTTGGGCCGGGTCGATGGCGCTCTATGAAACGGCCATTTTCGATCCGTCGGATCCTGTCCTGAATC
CGATGTGGCGTCAGGGCATGTTTGTCATGCCATTTATGGTTCGCCTGGGGGTGGTCAACTCCTGGGGCGGTTGGAATATC
TACGGCGAGAGCGTTGCCAATGCGGGCTTCTGGACGTTTGAAGGGGTAGCCACTGCCCATATCGTTTTGTCCGGCTTGCT
CTTCTTGGCTGCCTGCTGGCACTGGGTGTACTGGGATCTGGAGCTGTTCCGGGATCCCCGCACCGGCGAGCCGGCTTTGG
ATCTGCCGAAAATATTTGGGATCCACCTGCTGTTGGCCGGGATCCTCTGCTTTGGGTTTGGCGCCTTTCACCTGACGGGG
GTGTTTGGCCCGGGGATGTGGGTGAGCGATCCCTATGCGACGACGGGGCACGTCCAGCCGGTGGCGCCGGAATGGGGGCC
AGCCGGTTTTAACCCCTACAACGCCGGAGGGGTGGTGGCCCACCACATTGCTGCAGGCATCGTGGGCATCATTGCAGGTC
TATTTCACATCACGGTACGCCCACCCCAGCGCCTCTATCGCGCTCTGCGAATGGGGAACATCGAGACGGTGCTTTCCAGC
TCGATTGCGGCGGTGTTTTTTGCCGGTTTTGTGGTGGCCGGAACCATGTGGTACGGCAGCGCCACCACTCCTGTGGAGCT
GTTTGGCCCCACCCGCTACCAATGGGATTCTGGCTATTTCAACCAGGAGATTAACCGCCGGGTAAATGCGGCCATGGAAG
CCGGGATGACCCGCAGCGAGGCCTACAACTCCCTGCCCAAGTCTCTGCTCTTCTACGACTACGTGGGCAACAGCCCGGCC
AAGGGGGGACTGTTCCGAGCTGGCCCCATGAACAAAGGGGATGGCATTGCCATCGAGTGGCTGGGCTACCCGGTGTTCCG
TGACCGCGAAGGGCGGGAGCTGACGGTGCAGCGGATGCCCAACTTCTTCGAGACCTTCCCGGTTATCCTGCGGGATGCCG
ATGGCGTGGTGCGGGCAGACATTCCTTTCCGTCGGGCGGAGTCGCGCTACAGCTTTGAGCAGGTGGGGGTGACGGTGGAG
TTTTACGGCGGCAAGCTGGACGGCCAGGTGTTTACCGACCCGGCAACGGTTAAGAAGTATGCCCGCCAGGCCCAGTTGGG
TCAGTTGTTTGAGTTCGACCGAGAAACCCCCAAGGCGGACGGCACCTTCCACACCAGCCCCCGCGGTTGGTTTACCTTTG
CTCACGCCGTCTTTGCCCTGCTGTTCTTCTTTGGCCACATCTGGCACGGCGCTCGCACTCTCTTCCGCGATGTGTTCGCC
GGTATTGACCCCAATATGAGCGAGGAAATGGTGGAGTTCGGCGTCTTCCAGAAAGTAGGGGATCCCACCACTCGCAAGGT
TCAGGAAGCCTAG

Upstream 100 bases:

>100_bases
ACTCTGAAGAGACTGCTCGGGTCAGGATCCCAGGTAAGATGTCGGCTTAATTTTGACTGGATATCGCGCAAGTGTTGGAG
AACGTGGAGGACCGAGCTTT

Downstream 100 bases:

>100_bases
AGCCCTTTTCGGCGATGCCGTCGGCACTCTGCTTCACTTTGGAGATGGGGTGCTGGCGGCTCCGAGTTAATCTGGAATCA
AGCCCCCTTAGAAATGGAGG

Product: photosystem II P680 chlorophyll A apoprotein

Products: NA

Alternate protein names: Protein CP-47 [H]

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYETAIFDPSDPVLNPMWRQGMFVMPFMVRLGVVNSWGGWNI
YGESVANAGFWTFEGVATAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLAGILCFGFGAFHLTG
VFGPGMWVSDPYATTGHVQPVAPEWGPAGFNPYNAGGVVAHHIAAGIVGIIAGLFHITVRPPQRLYRALRMGNIETVLSS
SIAAVFFAGFVVAGTMWYGSATTPVELFGPTRYQWDSGYFNQEINRRVNAAMEAGMTRSEAYNSLPKSLLFYDYVGNSPA
KGGLFRAGPMNKGDGIAIEWLGYPVFRDREGRELTVQRMPNFFETFPVILRDADGVVRADIPFRRAESRYSFEQVGVTVE
FYGGKLDGQVFTDPATVKKYARQAQLGQLFEFDRETPKADGTFHTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFA
GIDPNMSEEMVEFGVFQKVGDPTTRKVQEA

Sequences:

>Translated_510_residues
MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYETAIFDPSDPVLNPMWRQGMFVMPFMVRLGVVNSWGGWNI
YGESVANAGFWTFEGVATAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLAGILCFGFGAFHLTG
VFGPGMWVSDPYATTGHVQPVAPEWGPAGFNPYNAGGVVAHHIAAGIVGIIAGLFHITVRPPQRLYRALRMGNIETVLSS
SIAAVFFAGFVVAGTMWYGSATTPVELFGPTRYQWDSGYFNQEINRRVNAAMEAGMTRSEAYNSLPKSLLFYDYVGNSPA
KGGLFRAGPMNKGDGIAIEWLGYPVFRDREGRELTVQRMPNFFETFPVILRDADGVVRADIPFRRAESRYSFEQVGVTVE
FYGGKLDGQVFTDPATVKKYARQAQLGQLFEFDRETPKADGTFHTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFA
GIDPNMSEEMVEFGVFQKVGDPTTRKVQEA
>Mature_509_residues
GLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYETAIFDPSDPVLNPMWRQGMFVMPFMVRLGVVNSWGGWNIY
GESVANAGFWTFEGVATAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLAGILCFGFGAFHLTGV
FGPGMWVSDPYATTGHVQPVAPEWGPAGFNPYNAGGVVAHHIAAGIVGIIAGLFHITVRPPQRLYRALRMGNIETVLSSS
IAAVFFAGFVVAGTMWYGSATTPVELFGPTRYQWDSGYFNQEINRRVNAAMEAGMTRSEAYNSLPKSLLFYDYVGNSPAK
GGLFRAGPMNKGDGIAIEWLGYPVFRDREGRELTVQRMPNFFETFPVILRDADGVVRADIPFRRAESRYSFEQVGVTVEF
YGGKLDGQVFTDPATVKKYARQAQLGQLFEFDRETPKADGTFHTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFAG
IDPNMSEEMVEFGVFQKVGDPTTRKVQEA

Specific function: This protein conjugates with chlorophyll and catalyzes the primary light-induced photochemical processes of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR017486 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 56715; Mature: 56583

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYETAIFDPSDPVLNPMWRQGM
CCCCEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHCCE
FVMPFMVRLGVVNSWGGWNIYGESVANAGFWTFEGVATAHIVLSGLLFLAACWHWVYWDL
EHHHHHHHHCCCCCCCCCEEEHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
ELFRDPRTGEPALDLPKIFGIHLLLAGILCFGFGAFHLTGVFGPGMWVSDPYATTGHVQP
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
VAPEWGPAGFNPYNAGGVVAHHIAAGIVGIIAGLFHITVRPPQRLYRALRMGNIETVLSS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCHHHHHHH
SIAAVFFAGFVVAGTMWYGSATTPVELFGPTRYQWDSGYFNQEINRRVNAAMEAGMTRSE
HHHHHHHHHHHHHHHHEECCCCCCEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCHHH
AYNSLPKSLLFYDYVGNSPAKGGLFRAGPMNKGDGIAIEWLGYPVFRDREGRELTVQRMP
HHHHHHHHHEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCEECCCCCEEEHHHCC
NFFETFPVILRDADGVVRADIPFRRAESRYSFEQVGVTVEFYGGKLDGQVFTDPATVKKY
CHHHHHHHHHCCCCCEEEECCCHHHHHCCCCHHHHCEEEEEECCEECCEEECCHHHHHHH
ARQAQLGQLFEFDRETPKADGTFHTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFA
HHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIDPNMSEEMVEFGVFQKVGDPTTRKVQEA
CCCCCCHHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
GLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYETAIFDPSDPVLNPMWRQGM
CCCEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHCCE
FVMPFMVRLGVVNSWGGWNIYGESVANAGFWTFEGVATAHIVLSGLLFLAACWHWVYWDL
EHHHHHHHHCCCCCCCCCEEEHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
ELFRDPRTGEPALDLPKIFGIHLLLAGILCFGFGAFHLTGVFGPGMWVSDPYATTGHVQP
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
VAPEWGPAGFNPYNAGGVVAHHIAAGIVGIIAGLFHITVRPPQRLYRALRMGNIETVLSS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCHHHHHHH
SIAAVFFAGFVVAGTMWYGSATTPVELFGPTRYQWDSGYFNQEINRRVNAAMEAGMTRSE
HHHHHHHHHHHHHHHHEECCCCCCEEECCCCCEECCCCCHHHHHHHHHHHHHHHCCCHHH
AYNSLPKSLLFYDYVGNSPAKGGLFRAGPMNKGDGIAIEWLGYPVFRDREGRELTVQRMP
HHHHHHHHHEEEEECCCCCCCCCEEECCCCCCCCCEEEEEECCCCEECCCCCEEEHHHCC
NFFETFPVILRDADGVVRADIPFRRAESRYSFEQVGVTVEFYGGKLDGQVFTDPATVKKY
CHHHHHHHHHCCCCCEEEECCCHHHHHCCCCHHHHCEEEEEECCEECCEEECCHHHHHHH
ARQAQLGQLFEFDRETPKADGTFHTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFA
HHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIDPNMSEEMVEFGVFQKVGDPTTRKVQEA
CCCCCCHHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2485088; 11759840 [H]