Click here to switch to the map view.

The map label for this gene is psbA-1 [H]

Identifier: 86607715

GI number: 86607715

Start: 226514

End: 227569

Strand: Direct

Name: psbA-1 [H]

Synonym: CYB_0216

Alternate gene names: 86607715

Gene position: 226514-227569 (Clockwise)

Preceding gene: 86607714

Following gene: 86607720

Centisome position: 7.43

GC content: 60.23

Gene sequence:

>1056_bases
ATGAGTACGGTAATTCGCCGCTCCTTGGCTGCGCGGCAGCTCTGGAGTTGGAATGGCTTTTGTCAATGGATAACCAGCAC
CGAAAACCGGCTGTACATCGGCTGGTTTGGCGTGTTGATGATCCCGACGCTGTTGGCGGCTGCCTTTTGTTTTGTAATCG
CTTTTATTGCTGCTCCGCCGGTGGATGTGGATGGGATCCGCGAGCCGGTGATCGGCTCTTTGATAGGGGGGAATAATCTC
ATCTCGGCGGCGGTGGTGCCCACCTCAGCGGCCATTGGCCTGCACTTCTACCCCATTTGGGAAGCCGCTTCTTTGGATGA
ATGGCTCTACAACGGCGGCCCCTACCAACTGATCGTGCTCCATTTTTTGATTGGGGTGTGGTGCTATCTGGGCCGGCAAT
GGGAGCTGAGCTATCGCTTGGGCATGCGTCCCTGGATTGCGGTGGCGTTTTCCGCTCCGGCGGCGGCGGCTACGGCAGTG
CTCTTGGTTTACCCCATCGGCCAGGGCAGTTTCTCGGAGGGCTTGCCCCTGGGGATCGCCGGCACCTTCTACTTCATGCT
GGCTTTCCAGGCGGAGCACAATATCCTCATGCACCCTGCTAGCTGGCTGGGGGTGGCCGGCGTCTTTGGCGGCGCTCTGC
TGGCCTCCCTGCACGGCTCCCTGGTGATCTCCAGCCTAATCCGCGAGACCTCGGAAGAAGAGTCACAAAATGCCGGCTAC
CGCTTCGGGCAGGAGGAAGTCACCTACAACTTCCTGGCCGGGCACTACGCGTTCTTGGGGCGGCTGGGGTTCCCCGGCCT
GGGCCTGAGAAACAGCCGTTCCGTCCACTTCTGGATGGCGGCCCTGCCCACAGTGGGGATTTGGGCGGCGGCAATAGGTA
TCGGCATAATGGCCTTTAACTTGAACGGCTTGAACTTCAACCAGTCCATCCTGGACAGCCAGGGCCGCTTCATCCCCACC
TACGCCGATCTCCTCAACCGCGCCAATCTGGGGATCCAGGTGATGCACGCCCCCAACGCCCATCATTTTCCCTTGCTGCT
GGCGGCTCAACCCTAA

Upstream 100 bases:

>100_bases
AAGAAGGAGACGCTTTTGGCGGTCGGCGCGGGAAGAGTTTTGCCCCGTTCAAGGAAGCCGACAAAGCAAAGAATGGTTTT
GTCTCTTTAGGAGTTGGCCT

Downstream 100 bases:

>100_bases
GGCAGGCTAGGGGCAGTCCAGCCGGAAAGCGCGGTGAATAGCTTGCAAGGCCGGGATCCCTCGATCCCGGCGCACTACAC
AGCTCACCTTGATCTCCGAG

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 2; Photosystem II protein D1 2 [H]

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSTVIRRSLAARQLWSWNGFCQWITSTENRLYIGWFGVLMIPTLLAAAFCFVIAFIAAPPVDVDGIREPVIGSLIGGNNL
ISAAVVPTSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAV
LLVYPIGQGSFSEGLPLGIAGTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
RFGQEEVTYNFLAGHYAFLGRLGFPGLGLRNSRSVHFWMAALPTVGIWAAAIGIGIMAFNLNGLNFNQSILDSQGRFIPT
YADLLNRANLGIQVMHAPNAHHFPLLLAAQP

Sequences:

>Translated_351_residues
MSTVIRRSLAARQLWSWNGFCQWITSTENRLYIGWFGVLMIPTLLAAAFCFVIAFIAAPPVDVDGIREPVIGSLIGGNNL
ISAAVVPTSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAV
LLVYPIGQGSFSEGLPLGIAGTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
RFGQEEVTYNFLAGHYAFLGRLGFPGLGLRNSRSVHFWMAALPTVGIWAAAIGIGIMAFNLNGLNFNQSILDSQGRFIPT
YADLLNRANLGIQVMHAPNAHHFPLLLAAQP
>Mature_350_residues
STVIRRSLAARQLWSWNGFCQWITSTENRLYIGWFGVLMIPTLLAAAFCFVIAFIAAPPVDVDGIREPVIGSLIGGNNLI
SAAVVPTSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVLHFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVL
LVYPIGQGSFSEGLPLGIAGTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGYR
FGQEEVTYNFLAGHYAFLGRLGFPGLGLRNSRSVHFWMAALPTVGIWAAAIGIGIMAFNLNGLNFNQSILDSQGRFIPTY
ADLLNRANLGIQVMHAPNAHHFPLLLAAQP

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 38201; Mature: 38070

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVIRRSLAARQLWSWNGFCQWITSTENRLYIGWFGVLMIPTLLAAAFCFVIAFIAAPP
CCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
VDVDGIREPVIGSLIGGNNLISAAVVPTSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVL
CCCCCCCCHHHHHHCCCCCEEEEEECCCCCEECEEEEECCCCCCHHHHHHCCCCHHHHHH
HFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVLLVYPIGQGSFSEGLPLGIA
HHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCCCHH
GTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
HHHHHHHEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RFGQEEVTYNFLAGHYAFLGRLGFPGLGLRNSRSVHFWMAALPTVGIWAAAIGIGIMAFN
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHEEEEEE
LNGLNFNQSILDSQGRFIPTYADLLNRANLGIQVMHAPNAHHFPLLLAAQP
ECCCCCCHHHHCCCCCEECHHHHHHCCCCCCEEEEECCCCCCCEEEEEECC
>Mature Secondary Structure 
STVIRRSLAARQLWSWNGFCQWITSTENRLYIGWFGVLMIPTLLAAAFCFVIAFIAAPP
CHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
VDVDGIREPVIGSLIGGNNLISAAVVPTSAAIGLHFYPIWEAASLDEWLYNGGPYQLIVL
CCCCCCCCHHHHHHCCCCCEEEEEECCCCCEECEEEEECCCCCCHHHHHHCCCCHHHHHH
HFLIGVWCYLGRQWELSYRLGMRPWIAVAFSAPAAAATAVLLVYPIGQGSFSEGLPLGIA
HHHHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCCCHH
GTFYFMLAFQAEHNILMHPASWLGVAGVFGGALLASLHGSLVISSLIRETSEEESQNAGY
HHHHHHHEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RFGQEEVTYNFLAGHYAFLGRLGFPGLGLRNSRSVHFWMAALPTVGIWAAAIGIGIMAFN
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHEEEEEE
LNGLNFNQSILDSQGRFIPTYADLLNRANLGIQVMHAPNAHHFPLLLAAQP
ECCCCCCHHHHCCCCCEECHHHHHHCCCCCCEEEEECCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA