| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607676
Identifier: 86607676
GI number: 86607676
Start: 187662
End: 188435
Strand: Direct
Name: 86607676
Synonym: CYB_0175
Alternate gene names: NA
Gene position: 187662-188435 (Clockwise)
Preceding gene: 86607673
Following gene: 86607678
Centisome position: 6.16
GC content: 57.62
Gene sequence:
>774_bases ATGACCCTCTCTCCTGTTCGGCTCACCCCGCCCCTACCTCCCATTCGATGGGAAAAACTGCCGGAAGACTTTCCCTTGCC GGATGAGCCTGTGGAAAGCACCTTACAGCCCCTTTTGGCTGCTGCTCTGCGTGAGGCATTGGAACTCGCTCAGATGATCC CTGCCCAGGCTTTGATCGCCTCCAACTTTGGCCTTTGCAGCACTGTCGGGGACAAGGTGGTGGTGAAAGCCCCCGACTGG GTTTATGTGCCCGCAGTACAGCCGATTCCCGAAGGAGAGATCCGCCGCAGCTATACCCCCCACCTAGAAGGGGATCCCCC GGCGATTGTGATGGAATTCATCTCCGAAACCGAGGGCGGCGAGTACTCCATCAATCCCCACTATCCCTATGGAAAATGGT ATTTCTACGAGCGCATTTTGCAGGTGCCTGTCTATGTAATCTTTCATCCCAAAACCGGTGAGCTGGATGTCTACCGCCTG GAGAATGGCCGCTATACCCCTGTATCGGCGGATGAAAACCGTCGCTACTGGATCCCGGAGATTGGCTTGTTTTTGGGGGT GTGGCGGGGACAAAAAGCCGAGACCAAAGCCAACTGGTTGCGGTGGTGGACTGCCGATGGGAATTTGCTCCTATGGGGAA TCGAACAGGTAGAGCAGGAGCGGCAGCGGGCCGAAGCGGCAGAAGCAGCCCTCGAACAGGCCCGTCTGGAACAGCAGCGC CTAGCCGCGAAATTGCGGGAGTTGGGCGTGGATCCCGAGGCAATAGCCGATTGA
Upstream 100 bases:
>100_bases CTGCAACAGCCTTGTGGAATTGCCTGGGGTTGATATCAGCAAGTGCTTTGAGTTATTCAAAAGGCATTCATGTACCTTAT CACCATGAGTATCCTCAGCC
Downstream 100 bases:
>100_bases GGGCTCTCCTAGTAGGTGCGCCCGCGCCAAGAGCGGGGCCGGCTGAGGGCAGATAGGATTATCCGCAGAACGGCCAAGGG ATCCGCCAGAGGCGACATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MTLSPVRLTPPLPPIRWEKLPEDFPLPDEPVESTLQPLLAAALREALELAQMIPAQALIASNFGLCSTVGDKVVVKAPDW VYVPAVQPIPEGEIRRSYTPHLEGDPPAIVMEFISETEGGEYSINPHYPYGKWYFYERILQVPVYVIFHPKTGELDVYRL ENGRYTPVSADENRRYWIPEIGLFLGVWRGQKAETKANWLRWWTADGNLLLWGIEQVEQERQRAEAAEAALEQARLEQQR LAAKLRELGVDPEAIAD
Sequences:
>Translated_257_residues MTLSPVRLTPPLPPIRWEKLPEDFPLPDEPVESTLQPLLAAALREALELAQMIPAQALIASNFGLCSTVGDKVVVKAPDW VYVPAVQPIPEGEIRRSYTPHLEGDPPAIVMEFISETEGGEYSINPHYPYGKWYFYERILQVPVYVIFHPKTGELDVYRL ENGRYTPVSADENRRYWIPEIGLFLGVWRGQKAETKANWLRWWTADGNLLLWGIEQVEQERQRAEAAEAALEQARLEQQR LAAKLRELGVDPEAIAD >Mature_256_residues TLSPVRLTPPLPPIRWEKLPEDFPLPDEPVESTLQPLLAAALREALELAQMIPAQALIASNFGLCSTVGDKVVVKAPDWV YVPAVQPIPEGEIRRSYTPHLEGDPPAIVMEFISETEGGEYSINPHYPYGKWYFYERILQVPVYVIFHPKTGELDVYRLE NGRYTPVSADENRRYWIPEIGLFLGVWRGQKAETKANWLRWWTADGNLLLWGIEQVEQERQRAEAAEAALEQARLEQQRL AAKLRELGVDPEAIAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29255; Mature: 29123
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSPVRLTPPLPPIRWEKLPEDFPLPDEPVESTLQPLLAAALREALELAQMIPAQALIA CCCCCCEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH SNFGLCSTVGDKVVVKAPDWVYVPAVQPIPEGEIRRSYTPHLEGDPPAIVMEFISETEGG CCCCCHHHCCCEEEEECCCEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCC EYSINPHYPYGKWYFYERILQVPVYVIFHPKTGELDVYRLENGRYTPVSADENRRYWIPE CEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCEECCCCCCCCCEEECCH IGLFLGVWRGQKAETKANWLRWWTADGNLLLWGIEQVEQERQRAEAAEAALEQARLEQQR HHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAKLRELGVDPEAIAD HHHHHHHHCCCHHHHCC >Mature Secondary Structure TLSPVRLTPPLPPIRWEKLPEDFPLPDEPVESTLQPLLAAALREALELAQMIPAQALIA CCCCCEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH SNFGLCSTVGDKVVVKAPDWVYVPAVQPIPEGEIRRSYTPHLEGDPPAIVMEFISETEGG CCCCCHHHCCCEEEEECCCEEEECCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHCCCCC EYSINPHYPYGKWYFYERILQVPVYVIFHPKTGELDVYRLENGRYTPVSADENRRYWIPE CEECCCCCCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCEECCCCCCCCCEEECCH IGLFLGVWRGQKAETKANWLRWWTADGNLLLWGIEQVEQERQRAEAAEAALEQARLEQQR HHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAKLRELGVDPEAIAD HHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA