BacMap

Definition	Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession	NC_007776
Length	3,046,682

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The map label for this gene is phnL [H]

Identifier: 86607669

GI number: 86607669

Start: 179095

End: 179790

Strand: Direct

Name: phnL [H]

Synonym: CYB_0167

Alternate gene names: 86607669

Gene position: 179095-179790 (Clockwise)

Preceding gene: 86607668

Following gene: 86607670

Centisome position: 5.88

GC content: 58.48

Gene sequence:

>696_bases
GTGTTGCAGGTCGTTAACTTAGAAAAGCGGTTCTTTCTTCACCGACTGGGGCGAGAGGTTCTGGCCTTCCAGCAGGTGAG
CTTTTCCCTGCAAGCCGGAGAGTTTTTGCTGCTGGAGGGCCCCAACGGCTCTGGCAAGTCTTCTCTACTGCGAACCCTCT
ACCGCAGCTATTGGCCTACGGCAGGACAAGCCCTCCTGCAGACCCCTCTGGGAACGGTGGATCTGGCCCGCTTAGGGGAT
CGCGAGGTGTTAGCAATCCGCCGCGAGCGCATCGGCTACGTCAGCCAGTTTCTGGATCCCAGGCCCCGCACCACGGCCTT
GGAGCTGGTTGCGGAGCCCTTGCTGTGGCAGGGAGTAGCGGAAAACCAAGCGCGACATCGAGCAGCAGAGCTGCTCCTGG
AGCTGGGTCTGAAGCCAGAGTTGCTGGAGACTTTTCCAACCAGCTTCTCGGGGGGCGAGAAACAGAAAGTCAACTTGGCT
CGCTCTCTCATCCACCCCTATCCGCTGCTGCTTCTGGACGAGCCCACCGCCAGCTTGGATACTGCAGCCAAGTTGGCCTT
GCGAGAACGCCTACGAGCCTTGAAGCAGCAGGGAACAGCTATCATTGGCGTTTTTCACTCCTTAGACGATGTGTCGGGTT
TGGTTGACAAAACCTATTCCCTGGAGGTGAGGGCAAATGTGGCTAGCAGGGCCTAA

Upstream 100 bases:

>100_bases
GGGGAGGTAGTGGAGGAGGGATTGGCCGACCAAGTGCTGGAGGATCCTCGCCACCCCTTTACCCAGGATCTGGTTGCCGC
AAGACTTTAGGAAGGGCAAG

Downstream 100 bases:

>100_bases
GCTAGTTCTCCCCGATGGTGTCCTCCCGGTGGGATCCCTGCGGCTGGAGGAGGAGCGGATTGCCGAGATTCGGCAGGGGC
AAGTGGGGGAAGGGATCCCT

Product: phosphonate C-P lyase system protein PhnL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLQVVNLEKRFFLHRLGREVLAFQQVSFSLQAGEFLLLEGPNGSGKSSLLRTLYRSYWPTAGQALLQTPLGTVDLARLGD
REVLAIRRERIGYVSQFLDPRPRTTALELVAEPLLWQGVAENQARHRAAELLLELGLKPELLETFPTSFSGGEKQKVNLA
RSLIHPYPLLLLDEPTASLDTAAKLALRERLRALKQQGTAIIGVFHSLDDVSGLVDKTYSLEVRANVASRA

Sequences:

>Translated_231_residues
MLQVVNLEKRFFLHRLGREVLAFQQVSFSLQAGEFLLLEGPNGSGKSSLLRTLYRSYWPTAGQALLQTPLGTVDLARLGD
REVLAIRRERIGYVSQFLDPRPRTTALELVAEPLLWQGVAENQARHRAAELLLELGLKPELLETFPTSFSGGEKQKVNLA
RSLIHPYPLLLLDEPTASLDTAAKLALRERLRALKQQGTAIIGVFHSLDDVSGLVDKTYSLEVRANVASRA
>Mature_231_residues
MLQVVNLEKRFFLHRLGREVLAFQQVSFSLQAGEFLLLEGPNGSGKSSLLRTLYRSYWPTAGQALLQTPLGTVDLARLGD
REVLAIRRERIGYVSQFLDPRPRTTALELVAEPLLWQGVAENQARHRAAELLLELGLKPELLETFPTSFSGGEKQKVNLA
RSLIHPYPLLLLDEPTASLDTAAKLALRERLRALKQQGTAIIGVFHSLDDVSGLVDKTYSLEVRANVASRA

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4778

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=218, Percent_Identity=28.8990825688073, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI9955968, Length=211, Percent_Identity=30.3317535545024, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI9955966, Length=211, Percent_Identity=30.3317535545024, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI45243524, Length=211, Percent_Identity=30.3317535545024, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI116734710, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27262624, Length=211, Percent_Identity=28.9099526066351, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27262626, Length=211, Percent_Identity=28.9099526066351, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI42741659, Length=213, Percent_Identity=28.169014084507, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI9961250, Length=213, Percent_Identity=28.169014084507, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=28.169014084507, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI9961252, Length=213, Percent_Identity=28.169014084507, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI9665248, Length=176, Percent_Identity=32.9545454545455, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1790534, Length=207, Percent_Identity=44.9275362318841, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=35.4066985645933, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789032, Length=213, Percent_Identity=31.924882629108, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789873, Length=191, Percent_Identity=32.4607329842932, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786398, Length=217, Percent_Identity=30.8755760368664, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=30.8035714285714, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789962, Length=228, Percent_Identity=29.8245614035088, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788506, Length=227, Percent_Identity=32.15859030837, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787105, Length=189, Percent_Identity=31.7460317460317, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=29.7297297297297, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787758, Length=217, Percent_Identity=26.7281105990783, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI145693107, Length=194, Percent_Identity=34.5360824742268, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787089, Length=189, Percent_Identity=32.2751322751323, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787500, Length=209, Percent_Identity=29.6650717703349, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1786698, Length=206, Percent_Identity=30.5825242718447, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788644, Length=215, Percent_Identity=30.6976744186047, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786703, Length=185, Percent_Identity=34.0540540540541, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI48995001, Length=218, Percent_Identity=30.7339449541284, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786319, Length=196, Percent_Identity=30.1020408163265, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788450, Length=192, Percent_Identity=31.25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=213, Percent_Identity=26.2910798122066, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=30.6603773584906, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787547, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790739, Length=214, Percent_Identity=32.7102803738318, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789891, Length=189, Percent_Identity=31.7460317460317, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI48994883, Length=212, Percent_Identity=30.6603773584906, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=210, Percent_Identity=32.8571428571429, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790525, Length=217, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=29.4642857142857, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI48994997, Length=200, Percent_Identity=30, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790467, Length=209, Percent_Identity=30.1435406698565, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787759, Length=218, Percent_Identity=29.8165137614679, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787712, Length=207, Percent_Identity=29.4685990338164, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=192, Percent_Identity=28.125, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787370, Length=210, Percent_Identity=30.4761904761905, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789751, Length=222, Percent_Identity=31.981981981982, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787112, Length=193, Percent_Identity=32.1243523316062, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081709, Length=197, Percent_Identity=28.4263959390863, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1790544, Length=225, Percent_Identity=28.4444444444444, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786872, Length=173, Percent_Identity=31.7919075144509, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=193, Percent_Identity=29.0155440414508, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI87081791, Length=194, Percent_Identity=31.4432989690722, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787548, Length=238, Percent_Identity=30.2521008403361, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788002, Length=197, Percent_Identity=35.0253807106599, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=201, Percent_Identity=28.3582089552239, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788165, Length=207, Percent_Identity=29.4685990338164, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789593, Length=204, Percent_Identity=25.4901960784314, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789963, Length=199, Percent_Identity=28.643216080402, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87082268, Length=209, Percent_Identity=28.7081339712919, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=223, Percent_Identity=30.9417040358744, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=200, Percent_Identity=26.5, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=226, Percent_Identity=26.1061946902655, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=185, Percent_Identity=29.1891891891892, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=203, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322980, Length=205, Percent_Identity=31.219512195122, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323217, Length=210, Percent_Identity=27.1428571428571, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574533, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI85726357, Length=212, Percent_Identity=28.7735849056604, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221512771, Length=217, Percent_Identity=26.7281105990783, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=25.6038647342995, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012701 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25680; Mature: 25680

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQVVNLEKRFFLHRLGREVLAFQQVSFSLQAGEFLLLEGPNGSGKSSLLRTLYRSYWPT
CCEEECHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC
AGQALLQTPLGTVDLARLGDREVLAIRRERIGYVSQFLDPRPRTTALELVAEPLLWQGVA
CHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ENQARHRAAELLLELGLKPELLETFPTSFSGGEKQKVNLARSLIHPYPLLLLDEPTASLD
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHH
TAAKLALRERLRALKQQGTAIIGVFHSLDDVSGLVDKTYSLEVRANVASRA
HHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCC
>Mature Secondary Structure
MLQVVNLEKRFFLHRLGREVLAFQQVSFSLQAGEFLLLEGPNGSGKSSLLRTLYRSYWPT
CCEEECHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC
AGQALLQTPLGTVDLARLGDREVLAIRRERIGYVSQFLDPRPRTTALELVAEPLLWQGVA
CHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ENQARHRAAELLLELGLKPELLETFPTSFSGGEKQKVNLARSLIHPYPLLLLDEPTASLD
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHH
TAAKLALRERLRALKQQGTAIIGVFHSLDDVSGLVDKTYSLEVRANVASRA
HHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]