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The map label for this gene is ydcM [C]

Identifier: 86607576

GI number: 86607576

Start: 86288

End: 87061

Strand: Direct

Name: ydcM [C]

Synonym: CYB_0074

Alternate gene names: 86607576

Gene position: 86288-87061 (Clockwise)

Preceding gene: 86607575

Following gene: 86607577

Centisome position: 2.83

GC content: 53.23

Gene sequence:

>774_bases
ATGAGAACTGCTTACCAGTATCGCTTACGCCCTACTTCTAGCCAAGTTGCTCTGATGGACCAATGGCTAGACTTGTTACG
CAAGCAGTACAACTACCGCTTGGCAGAGCGCTTTGCGTGGTGGCAACACAATCGCTGTGATAGCAATGCTTGTCCCTTAA
TCTGTCACTTGCCTGAGTTAAAAGACAATCCCGATTTCTACTCCCAGAAACGGGATTTGGTGAAGATGAAAGCCCTGTTT
CCGCAGTACAGAGCAGTCCATTCGCAAGTCCTCCAGAACTGCATAGAGCGAGTGCACAAAGCATTCGACCGCTGGCTGAA
GGGTGACGGTAGCGGCAAGCGGGCAGGGAAACCCAGATTCAAGGGAGTTGGGCGGTATCGCTCCTTCAGTTTCCCCCAGA
TGAAACAAGACTGCATTTGCGGGCAGTTTATCCATCTGCCCAAAATCGGTGCTGTTCGGATAATTCAGCACCGTCCTTTG
CCTGAGGGCTTTGTGATTAAGACCGCTGCCATCAGCCGCAAGGCAGACGGGTGGTATGTGACCTTGAGCCTGCAAGATTC
ATCTGTCCCCGTATTTACCCCTGACCCGCCAACACTGGAGAACACGATGGGGATCGACGTGGGGCTGGACTCCTTTTTGG
TGACCGATGCGGGGGAGTCTGTTCCAGTTCCCCAGTACTATCGCAAGGCAGAGCTCAGGCTCAAGAGGTTGCAGCGAGCC
TTGTCTCGCGAGAAGAAGGGGTCAAACCGCCTATGGCTAGTGACTAGTGGATAG

Upstream 100 bases:

>100_bases
TCACCACTATCCAGGGTGAGGGTCGGGATAAAAGGCGAGGACACGATGCTTCGTCCTTACTGGTGCTATGACCGGCGTAG
CAGGATTTTATACCCTCATC

Downstream 100 bases:

>100_bases
TGACCAGTAGATAGTGACCAGTGGATAGTGAATAGTGACTATCCACTAACCACTATCTCAGCGCAAAGATTTTCATGACA
AAACAGCGAACTGGCTGGTA

Product: ISSoc11, transposase orfA

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWQHNRCDSNACPLICHLPELKDNPDFYSQKRDLVKMKALF
PQYRAVHSQVLQNCIERVHKAFDRWLKGDGSGKRAGKPRFKGVGRYRSFSFPQMKQDCICGQFIHLPKIGAVRIIQHRPL
PEGFVIKTAAISRKADGWYVTLSLQDSSVPVFTPDPPTLENTMGIDVGLDSFLVTDAGESVPVPQYYRKAELRLKRLQRA
LSREKKGSNRLWLVTSG

Sequences:

>Translated_257_residues
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWQHNRCDSNACPLICHLPELKDNPDFYSQKRDLVKMKALF
PQYRAVHSQVLQNCIERVHKAFDRWLKGDGSGKRAGKPRFKGVGRYRSFSFPQMKQDCICGQFIHLPKIGAVRIIQHRPL
PEGFVIKTAAISRKADGWYVTLSLQDSSVPVFTPDPPTLENTMGIDVGLDSFLVTDAGESVPVPQYYRKAELRLKRLQRA
LSREKKGSNRLWLVTSG
>Mature_257_residues
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWQHNRCDSNACPLICHLPELKDNPDFYSQKRDLVKMKALF
PQYRAVHSQVLQNCIERVHKAFDRWLKGDGSGKRAGKPRFKGVGRYRSFSFPQMKQDCICGQFIHLPKIGAVRIIQHRPL
PEGFVIKTAAISRKADGWYVTLSLQDSSVPVFTPDPPTLENTMGIDVGLDSFLVTDAGESVPVPQYYRKAELRLKRLQRA
LSREKKGSNRLWLVTSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=162, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 29745; Mature: 29745

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWQHNRCDSNACPLICHLPEL
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEECCCC
KDNPDFYSQKRDLVKMKALFPQYRAVHSQVLQNCIERVHKAFDRWLKGDGSGKRAGKPRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
KGVGRYRSFSFPQMKQDCICGQFIHLPKIGAVRIIQHRPLPEGFVIKTAAISRKADGWYV
HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEHHHHCCCCCCEEE
TLSLQDSSVPVFTPDPPTLENTMGIDVGLDSFLVTDAGESVPVPQYYRKAELRLKRLQRA
EEEEECCCCCEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LSREKKGSNRLWLVTSG
HHHHCCCCCEEEEEECC
>Mature Secondary Structure
MRTAYQYRLRPTSSQVALMDQWLDLLRKQYNYRLAERFAWWQHNRCDSNACPLICHLPEL
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEECCCC
KDNPDFYSQKRDLVKMKALFPQYRAVHSQVLQNCIERVHKAFDRWLKGDGSGKRAGKPRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
KGVGRYRSFSFPQMKQDCICGQFIHLPKIGAVRIIQHRPLPEGFVIKTAAISRKADGWYV
HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEHHHHCCCCCCEEE
TLSLQDSSVPVFTPDPPTLENTMGIDVGLDSFLVTDAGESVPVPQYYRKAELRLKRLQRA
EEEEECCCCCEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LSREKKGSNRLWLVTSG
HHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]