Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606823

Identifier: 86606823

GI number: 86606823

Start: 2200785

End: 2203076

Strand: Reverse

Name: 86606823

Synonym: CYA_2183

Alternate gene names: NA

Gene position: 2203076-2200785 (Counterclockwise)

Preceding gene: 86606824

Following gene: 86606821

Centisome position: 75.12

GC content: 54.41

Gene sequence:

>2292_bases
ATGTATCGCTTTCAAGTTCGCGCCACCACTCAGCCCGGCGATCGAATTGCCCTGGTGGGATCCAGCCCTCAACTGGGCGC
CTGGGATCCCTGCCGCTGTGTTTGGCTGCAGACGGATCCCGATCGCTACCCGCTCTGGTGGGTGGAGTTGCCATTAGGCC
CGGCAGATGGCACTTCTAGCCCACTGTCCTCTGGGGAGGGACTCGAAGAAACCCCTCGACTGGAGTACCGGTACCTGCGC
GTTCAGGCCGATGGCGAAGTTATTTGGGAAGCCGCCGATAGGAATCGCTGGGTGCCGCTTGAGCCGGAACCTTTGCCGGC
AGTTTTGATCGTGGAAGATGGCGAGTTTGGCCGGATCCCTTTCTATCCATACGGCTATTTTGCCTTGCCGGTGAGCGAGC
CTGAGCCCGAAGATTGTCCGGGACTGAAGATAGTCGTCTTGGGCAGTTCGGTGGCCCTGGGGTGCAGCGCCTGGCTGTTG
CGAGGATGGGCCTGGCTGTTGCAGAAAGCTCTACGAGAACGCTATGGCCATCAAGTGCGGAACCTCTCCGAATTGGGGGC
AAACGTCAGCCGAACCCTGGCCCGATTTGAGCAGGTGGTGATCCCTGAACATCCCGATGTCGTTATTGTTGCCTTGTCTT
TGGGAAATGAAGGCTTGGCCACGGCTCTGCCGGAGCATCGCCGTGCCGTCCAAAGGCGGTTTGAAAACGGCCTGCAGCGG
TTAATTCAGCGAATTCAAGACATTGGAGCCTTGCCAGTTTTGGGAGGGGTTTACCCCCATGCAGACTACGGCCTAGAACA
GCATCTGCTTTTGCAGGAAACTCAGCAAAGGATGCTCAGTTGGGGATGCCCCGTGTTCAACTGGCTGCCCATCTTAGACG
ATGGCCAGGGGCGCTGGAAGCCAGATCTGGCTTTTGACGCGGCCCACCCTAATACCAAGGGGCACCAACTCATGTTTGCG
GCTATTGACCTCTCGATTTTTGATCCCAACACTGTGAAGTCAGCCCCCCTAAAGCTGGCATCATCCAAAGAAAAGCTGAT
TTTTGAGGATCCCTCTGGCTTTTGGGCGGCCTTGGAGGGTCAGAATCGATTCCGCCTTGTTAATATTACTCCTTATGATT
ACACCTTGACACCGACTTGGCAATCTTTACAAGCTGCTTTTCAAGAAGCTCGACTACAGCCAGGCTTATATATTGGTAAA
AGCGGTGAGAAAGGGCAAGATCAACCTTTGTACTCCCTCTCCATTCATGAGAATGGCTTGATTCAAACAACCCTTTCCAT
TCCCCCAGATGCCGACCTTGTCTTTTCTCCGGCAGCCGATTTTTTCTCTCCGGAATCTTCAGAAATAGTCTTTAGTGACG
GGACTCTAACACTCCTCAAACTTAGCTACCCATCCGCCGGCTTGGATCCCAAGCCCCGCCTGTGTGTGATTAACCAAAGC
AGCTATGAGTACAACATCCACCCTATGTGGAAAGAAGTGCGGGCTGCCCTCAAAGCTCTGCCAACAGGCGTTTATGAGGA
TCCCCTCTATCGCGATGCTCCCTTTCGCACGTTGATGATTGGAGAGAGGGGGTTGGAAAGCCGGGTCAAGGCTGCTCCCA
ACTCGGTCATGCTATTGGAATACACATGCGCCTTATCTGATATTCATCGCGTTGCTGTTGTTCCCCTGGGGGATCGCTGT
GCGGTGCGGATGCTGCTCTACAAGTTGGAATACGACGGGCCTGCCTTTCCGTTTGATCTAACCCGCACCAGCAACCTAGC
GGATGTAGCCGATATGATCCACCACGAGTTTCAGGGCATGTGGGATCCGCAATATTTGCACTACAGCCCTGAAGACAGGC
GAATTTATCACAGCAAGTGGACAGGTCTTTCTTTCGGCCATGAGGTGGAAGAGGGGGAAGACCCCCTGCAGAATATGAAT
CCAATCCATGAGCGGATGCGGACTCGTTATACAGCTCGCGCCAAGCGCTTTCTATATGTCTTGGAAAAGGCGGACAAGAC
CTTGTTCGTGCGCACAGGCGGCTGTCAGCGGGGCGCGGTGATCGACTTGATGGATAAATTGTCCGCTAAGCGAAAGGGCA
AGCCCTTCCTACTCCTTATCATTTCCCCTCAGCCTTCAGAGGAGTTTGCCGGGATCCCCAATGTCATCCACTACGATATG
GAGTTCAACCCCGACCGCATGTGTGCGGATCCCGAGCATTGGCGGTACTGCACAGAGATCATGAGAGAGATCCTCCATTC
TCTGGGAGTTTCCAGCCGCAATCTTTTCTGGTGTCCTCCCCAGCCGGCTTAA

Upstream 100 bases:

>100_bases
TTTTCTCTTACCAGTTGTCGGCAGGGTAATAAGCCAACTGATCAAGCCTGTCTATCTACCGGCAAATCCAGAATAGGTTC
CTCTCCCTCTCCTTCGGAAA

Downstream 100 bases:

>100_bases
TTGCCTGAGATCCTACCTAGAATGCGATGCCGGTAGGATCCTGCTCTGCCCTACCTCAGCGGTGTTTGCTTGGCACAGAA
AGAGCATCAGCCCAGAGGAT

Product: nuclease domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSSPLSSGEGLEETPRLEYRYLR
VQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIPFYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLL
RGWAWLLQKALRERYGHQVRNLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR
LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWKPDLAFDAAHPNTKGHQLMFA
AIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEGQNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGK
SGEKGQDQPLYSLSIHENGLIQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS
SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLEYTCALSDIHRVAVVPLGDRC
AVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGMWDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMN
PIHERMRTRYTARAKRFLYVLEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM
EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA

Sequences:

>Translated_763_residues
MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSSPLSSGEGLEETPRLEYRYLR
VQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIPFYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLL
RGWAWLLQKALRERYGHQVRNLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR
LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWKPDLAFDAAHPNTKGHQLMFA
AIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEGQNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGK
SGEKGQDQPLYSLSIHENGLIQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS
SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLEYTCALSDIHRVAVVPLGDRC
AVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGMWDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMN
PIHERMRTRYTARAKRFLYVLEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM
EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA
>Mature_763_residues
MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSSPLSSGEGLEETPRLEYRYLR
VQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIPFYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLL
RGWAWLLQKALRERYGHQVRNLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR
LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWKPDLAFDAAHPNTKGHQLMFA
AIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEGQNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGK
SGEKGQDQPLYSLSIHENGLIQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS
SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLEYTCALSDIHRVAVVPLGDRC
AVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGMWDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMN
PIHERMRTRYTARAKRFLYVLEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM
EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86320; Mature: 86320

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS51166 CBM20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSS
CEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCC
PLSSGEGLEETPRLEYRYLRVQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIP
CCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC
FYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLLRGWAWLLQKALRERYGHQVR
CCCCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR
HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHH
LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWK
HHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCC
PDLAFDAAHPNTKGHQLMFAAIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEG
CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEECCCCCCEEEECCCCCEEEEEC
QNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGKSGEKGQDQPLYSLSIHENGL
CCCEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCE
IQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS
EEEEECCCCCCCEEECCCHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEECC
SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLE
CCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCEEEEE
YTCALSDIHRVAVVPLGDRCAVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGM
EEHHHHCCCEEEEEECCCHHHHHHHHHEECCCCCCCCEECCCCCCHHHHHHHHHHHHCCC
WDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMNPIHERMRTRYTARAKRFLYV
CCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHE
LEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM
EECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCEEEECC
EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
>Mature Secondary Structure
MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSS
CEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCC
PLSSGEGLEETPRLEYRYLRVQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIP
CCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC
FYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLLRGWAWLLQKALRERYGHQVR
CCCCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR
HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHH
LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWK
HHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCC
PDLAFDAAHPNTKGHQLMFAAIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEG
CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEECCCCCCEEEECCCCCEEEEEC
QNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGKSGEKGQDQPLYSLSIHENGL
CCCEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCE
IQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS
EEEEECCCCCCCEEECCCHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEECC
SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLE
CCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCEEEEE
YTCALSDIHRVAVVPLGDRCAVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGM
EEHHHHCCCEEEEEECCCHHHHHHHHHEECCCCCCCCEECCCCCCHHHHHHHHHHHHCCC
WDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMNPIHERMRTRYTARAKRFLYV
CCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHE
LEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM
EECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCEEEECC
EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA