| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606823
Identifier: 86606823
GI number: 86606823
Start: 2200785
End: 2203076
Strand: Reverse
Name: 86606823
Synonym: CYA_2183
Alternate gene names: NA
Gene position: 2203076-2200785 (Counterclockwise)
Preceding gene: 86606824
Following gene: 86606821
Centisome position: 75.12
GC content: 54.41
Gene sequence:
>2292_bases ATGTATCGCTTTCAAGTTCGCGCCACCACTCAGCCCGGCGATCGAATTGCCCTGGTGGGATCCAGCCCTCAACTGGGCGC CTGGGATCCCTGCCGCTGTGTTTGGCTGCAGACGGATCCCGATCGCTACCCGCTCTGGTGGGTGGAGTTGCCATTAGGCC CGGCAGATGGCACTTCTAGCCCACTGTCCTCTGGGGAGGGACTCGAAGAAACCCCTCGACTGGAGTACCGGTACCTGCGC GTTCAGGCCGATGGCGAAGTTATTTGGGAAGCCGCCGATAGGAATCGCTGGGTGCCGCTTGAGCCGGAACCTTTGCCGGC AGTTTTGATCGTGGAAGATGGCGAGTTTGGCCGGATCCCTTTCTATCCATACGGCTATTTTGCCTTGCCGGTGAGCGAGC CTGAGCCCGAAGATTGTCCGGGACTGAAGATAGTCGTCTTGGGCAGTTCGGTGGCCCTGGGGTGCAGCGCCTGGCTGTTG CGAGGATGGGCCTGGCTGTTGCAGAAAGCTCTACGAGAACGCTATGGCCATCAAGTGCGGAACCTCTCCGAATTGGGGGC AAACGTCAGCCGAACCCTGGCCCGATTTGAGCAGGTGGTGATCCCTGAACATCCCGATGTCGTTATTGTTGCCTTGTCTT TGGGAAATGAAGGCTTGGCCACGGCTCTGCCGGAGCATCGCCGTGCCGTCCAAAGGCGGTTTGAAAACGGCCTGCAGCGG TTAATTCAGCGAATTCAAGACATTGGAGCCTTGCCAGTTTTGGGAGGGGTTTACCCCCATGCAGACTACGGCCTAGAACA GCATCTGCTTTTGCAGGAAACTCAGCAAAGGATGCTCAGTTGGGGATGCCCCGTGTTCAACTGGCTGCCCATCTTAGACG ATGGCCAGGGGCGCTGGAAGCCAGATCTGGCTTTTGACGCGGCCCACCCTAATACCAAGGGGCACCAACTCATGTTTGCG GCTATTGACCTCTCGATTTTTGATCCCAACACTGTGAAGTCAGCCCCCCTAAAGCTGGCATCATCCAAAGAAAAGCTGAT TTTTGAGGATCCCTCTGGCTTTTGGGCGGCCTTGGAGGGTCAGAATCGATTCCGCCTTGTTAATATTACTCCTTATGATT ACACCTTGACACCGACTTGGCAATCTTTACAAGCTGCTTTTCAAGAAGCTCGACTACAGCCAGGCTTATATATTGGTAAA AGCGGTGAGAAAGGGCAAGATCAACCTTTGTACTCCCTCTCCATTCATGAGAATGGCTTGATTCAAACAACCCTTTCCAT TCCCCCAGATGCCGACCTTGTCTTTTCTCCGGCAGCCGATTTTTTCTCTCCGGAATCTTCAGAAATAGTCTTTAGTGACG GGACTCTAACACTCCTCAAACTTAGCTACCCATCCGCCGGCTTGGATCCCAAGCCCCGCCTGTGTGTGATTAACCAAAGC AGCTATGAGTACAACATCCACCCTATGTGGAAAGAAGTGCGGGCTGCCCTCAAAGCTCTGCCAACAGGCGTTTATGAGGA TCCCCTCTATCGCGATGCTCCCTTTCGCACGTTGATGATTGGAGAGAGGGGGTTGGAAAGCCGGGTCAAGGCTGCTCCCA ACTCGGTCATGCTATTGGAATACACATGCGCCTTATCTGATATTCATCGCGTTGCTGTTGTTCCCCTGGGGGATCGCTGT GCGGTGCGGATGCTGCTCTACAAGTTGGAATACGACGGGCCTGCCTTTCCGTTTGATCTAACCCGCACCAGCAACCTAGC GGATGTAGCCGATATGATCCACCACGAGTTTCAGGGCATGTGGGATCCGCAATATTTGCACTACAGCCCTGAAGACAGGC GAATTTATCACAGCAAGTGGACAGGTCTTTCTTTCGGCCATGAGGTGGAAGAGGGGGAAGACCCCCTGCAGAATATGAAT CCAATCCATGAGCGGATGCGGACTCGTTATACAGCTCGCGCCAAGCGCTTTCTATATGTCTTGGAAAAGGCGGACAAGAC CTTGTTCGTGCGCACAGGCGGCTGTCAGCGGGGCGCGGTGATCGACTTGATGGATAAATTGTCCGCTAAGCGAAAGGGCA AGCCCTTCCTACTCCTTATCATTTCCCCTCAGCCTTCAGAGGAGTTTGCCGGGATCCCCAATGTCATCCACTACGATATG GAGTTCAACCCCGACCGCATGTGTGCGGATCCCGAGCATTGGCGGTACTGCACAGAGATCATGAGAGAGATCCTCCATTC TCTGGGAGTTTCCAGCCGCAATCTTTTCTGGTGTCCTCCCCAGCCGGCTTAA
Upstream 100 bases:
>100_bases TTTTCTCTTACCAGTTGTCGGCAGGGTAATAAGCCAACTGATCAAGCCTGTCTATCTACCGGCAAATCCAGAATAGGTTC CTCTCCCTCTCCTTCGGAAA
Downstream 100 bases:
>100_bases TTGCCTGAGATCCTACCTAGAATGCGATGCCGGTAGGATCCTGCTCTGCCCTACCTCAGCGGTGTTTGCTTGGCACAGAA AGAGCATCAGCCCAGAGGAT
Product: nuclease domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSSPLSSGEGLEETPRLEYRYLR VQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIPFYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLL RGWAWLLQKALRERYGHQVRNLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWKPDLAFDAAHPNTKGHQLMFA AIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEGQNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGK SGEKGQDQPLYSLSIHENGLIQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLEYTCALSDIHRVAVVPLGDRC AVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGMWDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMN PIHERMRTRYTARAKRFLYVLEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA
Sequences:
>Translated_763_residues MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSSPLSSGEGLEETPRLEYRYLR VQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIPFYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLL RGWAWLLQKALRERYGHQVRNLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWKPDLAFDAAHPNTKGHQLMFA AIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEGQNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGK SGEKGQDQPLYSLSIHENGLIQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLEYTCALSDIHRVAVVPLGDRC AVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGMWDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMN PIHERMRTRYTARAKRFLYVLEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA >Mature_763_residues MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSSPLSSGEGLEETPRLEYRYLR VQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIPFYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLL RGWAWLLQKALRERYGHQVRNLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWKPDLAFDAAHPNTKGHQLMFA AIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEGQNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGK SGEKGQDQPLYSLSIHENGLIQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLEYTCALSDIHRVAVVPLGDRC AVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGMWDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMN PIHERMRTRYTARAKRFLYVLEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86320; Mature: 86320
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS51166 CBM20
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSS CEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCC PLSSGEGLEETPRLEYRYLRVQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIP CCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC FYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLLRGWAWLLQKALRERYGHQVR CCCCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHH LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWK HHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCC PDLAFDAAHPNTKGHQLMFAAIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEG CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEECCCCCCEEEECCCCCEEEEEC QNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGKSGEKGQDQPLYSLSIHENGL CCCEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCE IQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS EEEEECCCCCCCEEECCCHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEECC SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLE CCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCEEEEE YTCALSDIHRVAVVPLGDRCAVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGM EEHHHHCCCEEEEEECCCHHHHHHHHHEECCCCCCCCEECCCCCCHHHHHHHHHHHHCCC WDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMNPIHERMRTRYTARAKRFLYV CCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHE LEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM EECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCEEEECC EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC >Mature Secondary Structure MYRFQVRATTQPGDRIALVGSSPQLGAWDPCRCVWLQTDPDRYPLWWVELPLGPADGTSS CEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCC PLSSGEGLEETPRLEYRYLRVQADGEVIWEAADRNRWVPLEPEPLPAVLIVEDGEFGRIP CCCCCCCCCCCCCCEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCC FYPYGYFALPVSEPEPEDCPGLKIVVLGSSVALGCSAWLLRGWAWLLQKALRERYGHQVR CCCCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLSELGANVSRTLARFEQVVIPEHPDVVIVALSLGNEGLATALPEHRRAVQRRFENGLQR HHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHH LIQRIQDIGALPVLGGVYPHADYGLEQHLLLQETQQRMLSWGCPVFNWLPILDDGQGRWK HHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCC PDLAFDAAHPNTKGHQLMFAAIDLSIFDPNTVKSAPLKLASSKEKLIFEDPSGFWAALEG CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEECCCCCCEEEECCCCCEEEEEC QNRFRLVNITPYDYTLTPTWQSLQAAFQEARLQPGLYIGKSGEKGQDQPLYSLSIHENGL CCCEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCE IQTTLSIPPDADLVFSPAADFFSPESSEIVFSDGTLTLLKLSYPSAGLDPKPRLCVINQS EEEEECCCCCCCEEECCCHHHCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEECC SYEYNIHPMWKEVRAALKALPTGVYEDPLYRDAPFRTLMIGERGLESRVKAAPNSVMLLE CCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCCCEEEEE YTCALSDIHRVAVVPLGDRCAVRMLLYKLEYDGPAFPFDLTRTSNLADVADMIHHEFQGM EEHHHHCCCEEEEEECCCHHHHHHHHHEECCCCCCCCEECCCCCCHHHHHHHHHHHHCCC WDPQYLHYSPEDRRIYHSKWTGLSFGHEVEEGEDPLQNMNPIHERMRTRYTARAKRFLYV CCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHE LEKADKTLFVRTGGCQRGAVIDLMDKLSAKRKGKPFLLLIISPQPSEEFAGIPNVIHYDM EECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCEEEECC EFNPDRMCADPEHWRYCTEIMREILHSLGVSSRNLFWCPPQPA CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA