| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606794
Identifier: 86606794
GI number: 86606794
Start: 2166261
End: 2166743
Strand: Reverse
Name: 86606794
Synonym: CYA_2153
Alternate gene names: NA
Gene position: 2166743-2166261 (Counterclockwise)
Preceding gene: 86606795
Following gene: 86606792
Centisome position: 73.88
GC content: 59.83
Gene sequence:
>483_bases ATGCCCCTGCTTTCCCCTCTGCGCCTGCGTCGTCTGGCTCGGCAAGAACAACTGAGAAACCGGCAGACCTTGATTACTTT CCAACTGGGCTCCTACTGCTTCGGCCTCCCTGTTGATCGGGCGCGGCGAGTTTTTAGCTGGGCAGAGTTTCAGCTTGCTC AGGAGGGCGGCCCCCAGCTTTTGGATACCGGTCGTTTGTTGCTGGGCCGAGGGATCCCTTTTCAACCGGAAGGGGTTATT CTGTTGCAGCCAGGCAGTTCTGAGGACGGATTGTCCGACCAGATCGACAACCCAGAAACAGGGGCTCTGCCCATTCCCAC TCAGCCCCTCCTGCGCCGCCTGACATCCTCCCAGTTGCAGCCTCTCCCCAGCCGCTATGCAGCTCAGGCCCGCCAAAGGG GTATTGTGCAGTGGATCCCGCCAGTTGAAGGTCAGCTCCCCCTGTTGGTGTTCGACCCTCATCTCTGGCCTGCCTGTTCT TGA
Upstream 100 bases:
>100_bases CAAGCCCTTCCAGGAACAGGAGCTGATCCAAAAGCTGCGGCAACTGCTGCAACCAGCCTCTTCGGCACCTTCCACCGGCG TTTTGATGGCGAGGTAGTCC
Downstream 100 bases:
>100_bases GAAGCGAGAAGGGGCAGTTGCAGCTCTGGATTCTCCACGCGGGTTAGCTCCCAGCGAAAGGGCTCCCCACCCCGTCGCTG CCAATTCAATTGGAAGGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MPLLSPLRLRRLARQEQLRNRQTLITFQLGSYCFGLPVDRARRVFSWAEFQLAQEGGPQLLDTGRLLLGRGIPFQPEGVI LLQPGSSEDGLSDQIDNPETGALPIPTQPLLRRLTSSQLQPLPSRYAAQARQRGIVQWIPPVEGQLPLLVFDPHLWPACS
Sequences:
>Translated_160_residues MPLLSPLRLRRLARQEQLRNRQTLITFQLGSYCFGLPVDRARRVFSWAEFQLAQEGGPQLLDTGRLLLGRGIPFQPEGVI LLQPGSSEDGLSDQIDNPETGALPIPTQPLLRRLTSSQLQPLPSRYAAQARQRGIVQWIPPVEGQLPLLVFDPHLWPACS >Mature_159_residues PLLSPLRLRRLARQEQLRNRQTLITFQLGSYCFGLPVDRARRVFSWAEFQLAQEGGPQLLDTGRLLLGRGIPFQPEGVIL LQPGSSEDGLSDQIDNPETGALPIPTQPLLRRLTSSQLQPLPSRYAAQARQRGIVQWIPPVEGQLPLLVFDPHLWPACS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17923; Mature: 17792
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLSPLRLRRLARQEQLRNRQTLITFQLGSYCFGLPVDRARRVFSWAEFQLAQEGGPQL CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC LDTGRLLLGRGIPFQPEGVILLQPGSSEDGLSDQIDNPETGALPIPTQPLLRRLTSSQLQ HHCCHHEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC PLPSRYAAQARQRGIVQWIPPVEGQLPLLVFDPHLWPACS CCHHHHHHHHHHCCCEEECCCCCCCCCEEEECCCCCCCCC >Mature Secondary Structure PLLSPLRLRRLARQEQLRNRQTLITFQLGSYCFGLPVDRARRVFSWAEFQLAQEGGPQL CCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC LDTGRLLLGRGIPFQPEGVILLQPGSSEDGLSDQIDNPETGALPIPTQPLLRRLTSSQLQ HHCCHHEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC PLPSRYAAQARQRGIVQWIPPVEGQLPLLVFDPHLWPACS CCHHHHHHHHHHCCCEEECCCCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA