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The map label for this gene is 86606764

Identifier: 86606764

GI number: 86606764

Start: 2138613

End: 2139137

Strand: Reverse

Name: 86606764

Synonym: CYA_2124

Alternate gene names: NA

Gene position: 2139137-2138613 (Counterclockwise)

Preceding gene: 86606765

Following gene: 86606763

Centisome position: 72.94

GC content: 61.33

Gene sequence:

>525_bases
ATGGGCGTCAACGCTCCCCTCCTGTACCTGGTGGCTTTGGCCGGTATCCTCAGCGTGGTGGGCTACTTCGTCCTGCGCGA
GGTGCTGCGGATACGGGCCCAGGAAAGAGTCATCCGGCAGCTCCAGCCCCGCCTGAGCAAAGGCAAGGGATCCCCGCAGG
AGCACTACGAGTTGGGCAGCGTCTATCTGCAAAAGCGCCTCTACGACCAGGCTATCGTCCAGCTTAAAAAAGCTCTAGAG
GTGGCTGGGGAGAACATTCCCCCCGTCTGCAACGCCCTCGGCTTTGCCTACTTCAGCCAGGGGCAATACGACTTGGCCAT
CCGCTACTACAAAGACGCGGTGGCAGCGGATCCCGGCTATGTAACCGCTTGGAACAATCTGGCCCATGCCTACGAGAAGA
AAAATCTCTACGGCCCTGGCCTCGAGGCCTACGAGACGGTGCTGCAACTGGATCCGAAGAATGCCATTGCCAAGCGCCGC
GCCGAGTCCCTGCGCAAACGTTTGCGGCCCAGCCCCCGCGGCTGA

Upstream 100 bases:

>100_bases
GATCTCGCGCCAGATCGACAAAGATCTTTGGTTGATCGAGGCTCACCTGCAGGCGTAACGCTGGCAAGGCAAATCTGAAG
AGGCAAGCGGGATAGGCAAA

Downstream 100 bases:

>100_bases
CCGTGTTTTATCTGGGTAGATGTCTGCGCAGATATGTATAAATACTTATGGCAGCTCGCCTATCGATTGGCGGTAGCTGC
TCAATCCCGACTATTGGAGT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: Photosystem I Assembly Related Protein Ycf; Tetratricopeptide Repeat Domain Protein; Photosystem I Assembly Protein; Photosystem I Assembly Related Protein; Tetratricopeptide Repeat Protein; TPR Repeat-Containing Photosystem I Assembly Protein Ycf; TPR Domain-Containing Protein

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MGVNAPLLYLVALAGILSVVGYFVLREVLRIRAQERVIRQLQPRLSKGKGSPQEHYELGSVYLQKRLYDQAIVQLKKALE
VAGENIPPVCNALGFAYFSQGQYDLAIRYYKDAVAADPGYVTAWNNLAHAYEKKNLYGPGLEAYETVLQLDPKNAIAKRR
AESLRKRLRPSPRG

Sequences:

>Translated_174_residues
MGVNAPLLYLVALAGILSVVGYFVLREVLRIRAQERVIRQLQPRLSKGKGSPQEHYELGSVYLQKRLYDQAIVQLKKALE
VAGENIPPVCNALGFAYFSQGQYDLAIRYYKDAVAADPGYVTAWNNLAHAYEKKNLYGPGLEAYETVLQLDPKNAIAKRR
AESLRKRLRPSPRG
>Mature_173_residues
GVNAPLLYLVALAGILSVVGYFVLREVLRIRAQERVIRQLQPRLSKGKGSPQEHYELGSVYLQKRLYDQAIVQLKKALEV
AGENIPPVCNALGFAYFSQGQYDLAIRYYKDAVAADPGYVTAWNNLAHAYEKKNLYGPGLEAYETVLQLDPKNAIAKRRA
ESLRKRLRPSPRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19548; Mature: 19417

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVNAPLLYLVALAGILSVVGYFVLREVLRIRAQERVIRQLQPRLSKGKGSPQEHYELGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VYLQKRLYDQAIVQLKKALEVAGENIPPVCNALGFAYFSQGQYDLAIRYYKDAVAADPGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
VTAWNNLAHAYEKKNLYGPGLEAYETVLQLDPKNAIAKRRAESLRKRLRPSPRG
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GVNAPLLYLVALAGILSVVGYFVLREVLRIRAQERVIRQLQPRLSKGKGSPQEHYELGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
VYLQKRLYDQAIVQLKKALEVAGENIPPVCNALGFAYFSQGQYDLAIRYYKDAVAADPGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
VTAWNNLAHAYEKKNLYGPGLEAYETVLQLDPKNAIAKRRAESLRKRLRPSPRG
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA