| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
Click here to switch to the map view.
The map label for this gene is 86606731
Identifier: 86606731
GI number: 86606731
Start: 2108029
End: 2109066
Strand: Reverse
Name: 86606731
Synonym: CYA_2091
Alternate gene names: NA
Gene position: 2109066-2108029 (Counterclockwise)
Preceding gene: 86606732
Following gene: 86606729
Centisome position: 71.91
GC content: 54.91
Gene sequence:
>1038_bases TTGTGGCGCCATTCAGCGACGCTGTTCTCACGGTGGGATCCCGCTAGAGTCATTCCGCAGGCTGACAACATCCCTAATCG AGAGCGAGGCGATAAGCAAATGTTTCGACGACTCGGTATACCCAGAAGATTTTGGCAACCGGCTGCGCTTGTCCTGGCGG CAGTGCTTACAGGTTCCCTAACGGTTTTCCTGAAAGGTTGCGGTGGTGGTACCTCCAGCAGCCCCTCGACCGTGGGGTCG CCGCCAAGGGATCCCGGCTCTGGCTCTGGCTCTACCTCTGCCATTTTGGGATTGGTGGTTGATCCCTTTGCTCAGCTTTG CCCTTCAGGCTCAACAGCCGCCCTTTGTTCGGGAGGGCCGCTCTTTTCAAGAGGCAATAAGGTTGAGTTGTTCAACCTAA GCTCAAGAGGGGACATTTTGTTGCCTGCCTTGTCAACCACTGCCTTGGAGGGCAACTTGCGGTTCACCATTCCCTTTTCC GGATCGATTATTCAACCGCCGGGGAAATTGGTATCGGTTCAGTCCAATCTCCTGGGCCAAGGGCGTCAGTCCGGCCAGCC TACACCCCTGCGGGGATTTGTTTTCAGCGCAGCCGTGGATGTTTCCCCTTGGAGCGAAGCCCTTTATCGCATCTTGCTGG GGGAGCGGGATAGAGTACCTTTCTCCAACTTAGCTCCCCCCGAAGTTAGGGATCTGGAGAATATTCTGTTTGTCAGCGTA CCTCTTTCCAGAACAGCCCGAGACCTGGAGGAAATCATTACGGACATCATTCGACAAGCGGATCAACTTAGTTTTAATCA GCTTCGCTTTGTGGAGGATCTTATTCGCGTTTGCTATGCCCCAGAAGGCAATCAATCGGATCAGCCCTGCCGCCTCCGCA TTCCCGTACCCCTACCGCCGGCACCTACGCCGACTCCATTTGTGCCTGCTCCTGAAACTCCCGCTCTTCCCACCATCATC ACCAACAGAGCTGTTGTTCGTTCAGCATCGGGCTCGTTGCTCTTTAGCAACACGGTTTCGGTGAGGGTAGATAACTGA
Upstream 100 bases:
>100_bases GAGCACCGCCTGCAGGTGAGGGTGCAAAGCAATGTTCCGCTATCTGCTGGTTCTTATCTTCTCAGTGGCGAGCTGAGAGT TGAGAGAGAAGGCAGCCGTT
Downstream 100 bases:
>100_bases TGGCTGCCTCGTTTTAGTCAAGTTTGATGTGAGCTGATTTTGTGTTTCAAGAGAACGCGCTGAGAGAGCCGAGGAGTGTT GAATGCTGACCTCAAAACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MWRHSATLFSRWDPARVIPQADNIPNRERGDKQMFRRLGIPRRFWQPAALVLAAVLTGSLTVFLKGCGGGTSSSPSTVGS PPRDPGSGSGSTSAILGLVVDPFAQLCPSGSTAALCSGGPLFSRGNKVELFNLSSRGDILLPALSTTALEGNLRFTIPFS GSIIQPPGKLVSVQSNLLGQGRQSGQPTPLRGFVFSAAVDVSPWSEALYRILLGERDRVPFSNLAPPEVRDLENILFVSV PLSRTARDLEEIITDIIRQADQLSFNQLRFVEDLIRVCYAPEGNQSDQPCRLRIPVPLPPAPTPTPFVPAPETPALPTII TNRAVVRSASGSLLFSNTVSVRVDN
Sequences:
>Translated_345_residues MWRHSATLFSRWDPARVIPQADNIPNRERGDKQMFRRLGIPRRFWQPAALVLAAVLTGSLTVFLKGCGGGTSSSPSTVGS PPRDPGSGSGSTSAILGLVVDPFAQLCPSGSTAALCSGGPLFSRGNKVELFNLSSRGDILLPALSTTALEGNLRFTIPFS GSIIQPPGKLVSVQSNLLGQGRQSGQPTPLRGFVFSAAVDVSPWSEALYRILLGERDRVPFSNLAPPEVRDLENILFVSV PLSRTARDLEEIITDIIRQADQLSFNQLRFVEDLIRVCYAPEGNQSDQPCRLRIPVPLPPAPTPTPFVPAPETPALPTII TNRAVVRSASGSLLFSNTVSVRVDN >Mature_345_residues MWRHSATLFSRWDPARVIPQADNIPNRERGDKQMFRRLGIPRRFWQPAALVLAAVLTGSLTVFLKGCGGGTSSSPSTVGS PPRDPGSGSGSTSAILGLVVDPFAQLCPSGSTAALCSGGPLFSRGNKVELFNLSSRGDILLPALSTTALEGNLRFTIPFS GSIIQPPGKLVSVQSNLLGQGRQSGQPTPLRGFVFSAAVDVSPWSEALYRILLGERDRVPFSNLAPPEVRDLENILFVSV PLSRTARDLEEIITDIIRQADQLSFNQLRFVEDLIRVCYAPEGNQSDQPCRLRIPVPLPPAPTPTPFVPAPETPALPTII TNRAVVRSASGSLLFSNTVSVRVDN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37086; Mature: 37086
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRHSATLFSRWDPARVIPQADNIPNRERGDKQMFRRLGIPRRFWQPAALVLAAVLTGSL CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHCCE TVFLKGCGGGTSSSPSTVGSPPRDPGSGSGSTSAILGLVVDPFAQLCPSGSTAALCSGGP EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCC LFSRGNKVELFNLSSRGDILLPALSTTALEGNLRFTIPFSGSIIQPPGKLVSVQSNLLGQ CCCCCCEEEEEEECCCCCEEEEECCCEEECCCEEEEEECCCCEECCCCCEEEEHHHHHHC GRQSGQPTPLRGFVFSAAVDVSPWSEALYRILLGERDRVPFSNLAPPEVRDLENILFVSV CCCCCCCCCCHHEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCEEEEEC PLSRTARDLEEIITDIIRQADQLSFNQLRFVEDLIRVCYAPEGNQSDQPCRLRIPVPLPP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC APTPTPFVPAPETPALPTIITNRAVVRSASGSLLFSNTVSVRVDN CCCCCCCCCCCCCCCCCHHHCCCHHEECCCCCEEEECEEEEEECC >Mature Secondary Structure MWRHSATLFSRWDPARVIPQADNIPNRERGDKQMFRRLGIPRRFWQPAALVLAAVLTGSL CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHCCE TVFLKGCGGGTSSSPSTVGSPPRDPGSGSGSTSAILGLVVDPFAQLCPSGSTAALCSGGP EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCC LFSRGNKVELFNLSSRGDILLPALSTTALEGNLRFTIPFSGSIIQPPGKLVSVQSNLLGQ CCCCCCEEEEEEECCCCCEEEEECCCEEECCCEEEEEECCCCEECCCCCEEEEHHHHHHC GRQSGQPTPLRGFVFSAAVDVSPWSEALYRILLGERDRVPFSNLAPPEVRDLENILFVSV CCCCCCCCCCHHEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCEEEEEC PLSRTARDLEEIITDIIRQADQLSFNQLRFVEDLIRVCYAPEGNQSDQPCRLRIPVPLPP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC APTPTPFVPAPETPALPTIITNRAVVRSASGSLLFSNTVSVRVDN CCCCCCCCCCCCCCCCCHHHCCCHHEECCCCCEEEECEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA