| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606689
Identifier: 86606689
GI number: 86606689
Start: 2067865
End: 2069631
Strand: Reverse
Name: 86606689
Synonym: CYA_2049
Alternate gene names: NA
Gene position: 2069631-2067865 (Counterclockwise)
Preceding gene: 86606690
Following gene: 86606688
Centisome position: 70.57
GC content: 65.42
Gene sequence:
>1767_bases GTGGAGTCAGAAAGACCCCCCCTTCGACTGTTTCCCCTGGGCACGGATCCCCGCCGGCAGGGCTGTGCCTACTGGCTGGA GATGGGATCCCACCGCTTGCTCCTCGATTGCGGTTTGCCTGCTTCCTCCCTCTTCAAGGCCCTGCCAGGGATCCCGGATG CGGTGATCTGCAGCCATGCTCACTTTGACCACCTGCAGGGGCTGCCCGCCTTTTATCGTCGCTACCCGCAGGTGCCTATC TATGCCACTCCCCTGACCGCCCACTTGGCGGGCGGCCTGTGGGAGCGGGGCGTTTGGCCGGGCTACGACCGGGAAATTCG CTTTCCTCCCTTTCGGGCACTGCCCTTTGGCCAGGCACGAGAGATCCTGCCCCATCTGATGCTCACCTTTTTCACAGCCG GGCACCTGCCGGGAGCAGCGGCAACCCTGCTGCAAAATACCCAGACCACTCCGGCCCAAACCTGCGTCTACACCGGCGAC TGTTCCCTGGCCTCAACCCGCTTTGCCCCCGGCTTGGATCTCACCGCTTTGCGCCATTGGCAGCCGGACGTGCTGCTCAT CGAAGCCTCGCTGGGATCCACTCGCCATCCGCCCCGTCGCCATCTGGAAAACCGCCTGGTGGAGCGCCTGCTTGGCGCCT TGGCTGCAGGCCAGACGGTGCTGTTCCCGCTGCCAGTGCTAGGGTTGGGCCAGGAGTTGATTTTCCTCCTCAAAGCTCAC CACCGCTTTACCCAAGCTTCCCAGGAGCTGACGGTGTGGGTGGCGCCAGGCCTAGCTGCAGGCTGCAACCTCTACGAACG CTTGCTCCCCTACCTGCCGGAGCCGGTGCGCAATTTCGCCACCTATCAGCCCTTGTTCTGGGAAGACCGCCTGCAGCCGC GGGTGCAGCCCCTCACGGAGGCGGATCCCCTGCCCCAGGGCCTGTTGCTGTGCGATGCCGATGCCGGGCCTGAAGCCTGG GATCCCATCTGGTCGCGCTTGCTGGCCCAGCCGCAGCGCTCCTGTCTGCTGGTGCGGCTGCCGGAAGTGGAGCTGGCCAC CCCCTTTGACCAATGGCCAGCGCCGCTGCGCTCCCGCATCGGAGTGGAGTGGCTGGCCTGGCACAGCCACAACGACGTTG GGCATCTGACCCAGATCGTCCACACCTTTCGCCCCCAACATGTGGTCTTGGTGCACGCCAGCCCCCAGCAGGCGCAGGAT CTGGCGGATCTGCCGGAGCTGTGCAACCGTTACCATGTCCACTGCCCCCAACCCGGCCATTGGTTGGAGCTGCCTGACGG CCGCCTGCAAACCCAAGTCAAGCCGTCAGAATTTCCCAGGGATCCCGCCTTGCGCTACGAGGGGGAGGTGGAAGAGATCT GGCAGGAACAGGGCTCGCCCCGCGCCTTGGCCGGCGTACAGGTACGGCTGCCCCCTCAGATTGCCCAGGATCCCCGCTGG GCCGCCTGGGCTGAGACTGGCTTGGTGGAGGCCCGCTGGCAGGGATCCGAACTGGTGTTGCGCGGCCTTTCGCCGCGGGA GCTGATCCGCCCGGCAGGGGCCGCCCCCGCACCAGCAGGAATCGTGCCGCGTCCAAAACAGCCTTCTGCCTCCACCGATA ACGGTGGCAGAAAGTGCCAGAACTGCCGCTTTGCCCGCCAGATCTTAACCTCACAAGCCCAAGCCTTTCGCTGCGACCAA GAGCGCTCCCCCCTCTACCGCCTCCGGGTGGATCCGCAAGGAAGCTGTCCCTACCATCAGCCGCTGGAAATCCGCTCTTC CGGTTAG
Upstream 100 bases:
>100_bases TTCCGGGAGGTGTACGGAGGGGGAGGGGCGATCCCTGGCCGAGCCGCCCTTGTGGTTTGCAGGATTGAGCGTGGTCTTCT AGCTTAAAAACAACACATCT
Downstream 100 bases:
>100_bases TCAGCCCCCGAAGCCCCAGCAGCCCAAAGGCTAGAATGGGGCCAGTCGCGGTACCCACCATGCTTGAGCAACAACCCTGG GCAGATCGTCGCCAGGGGCT
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 588; Mature: 588
Protein sequence:
>588_residues MESERPPLRLFPLGTDPRRQGCAYWLEMGSHRLLLDCGLPASSLFKALPGIPDAVICSHAHFDHLQGLPAFYRRYPQVPI YATPLTAHLAGGLWERGVWPGYDREIRFPPFRALPFGQAREILPHLMLTFFTAGHLPGAAATLLQNTQTTPAQTCVYTGD CSLASTRFAPGLDLTALRHWQPDVLLIEASLGSTRHPPRRHLENRLVERLLGALAAGQTVLFPLPVLGLGQELIFLLKAH HRFTQASQELTVWVAPGLAAGCNLYERLLPYLPEPVRNFATYQPLFWEDRLQPRVQPLTEADPLPQGLLLCDADAGPEAW DPIWSRLLAQPQRSCLLVRLPEVELATPFDQWPAPLRSRIGVEWLAWHSHNDVGHLTQIVHTFRPQHVVLVHASPQQAQD LADLPELCNRYHVHCPQPGHWLELPDGRLQTQVKPSEFPRDPALRYEGEVEEIWQEQGSPRALAGVQVRLPPQIAQDPRW AAWAETGLVEARWQGSELVLRGLSPRELIRPAGAAPAPAGIVPRPKQPSASTDNGGRKCQNCRFARQILTSQAQAFRCDQ ERSPLYRLRVDPQGSCPYHQPLEIRSSG
Sequences:
>Translated_588_residues MESERPPLRLFPLGTDPRRQGCAYWLEMGSHRLLLDCGLPASSLFKALPGIPDAVICSHAHFDHLQGLPAFYRRYPQVPI YATPLTAHLAGGLWERGVWPGYDREIRFPPFRALPFGQAREILPHLMLTFFTAGHLPGAAATLLQNTQTTPAQTCVYTGD CSLASTRFAPGLDLTALRHWQPDVLLIEASLGSTRHPPRRHLENRLVERLLGALAAGQTVLFPLPVLGLGQELIFLLKAH HRFTQASQELTVWVAPGLAAGCNLYERLLPYLPEPVRNFATYQPLFWEDRLQPRVQPLTEADPLPQGLLLCDADAGPEAW DPIWSRLLAQPQRSCLLVRLPEVELATPFDQWPAPLRSRIGVEWLAWHSHNDVGHLTQIVHTFRPQHVVLVHASPQQAQD LADLPELCNRYHVHCPQPGHWLELPDGRLQTQVKPSEFPRDPALRYEGEVEEIWQEQGSPRALAGVQVRLPPQIAQDPRW AAWAETGLVEARWQGSELVLRGLSPRELIRPAGAAPAPAGIVPRPKQPSASTDNGGRKCQNCRFARQILTSQAQAFRCDQ ERSPLYRLRVDPQGSCPYHQPLEIRSSG >Mature_588_residues MESERPPLRLFPLGTDPRRQGCAYWLEMGSHRLLLDCGLPASSLFKALPGIPDAVICSHAHFDHLQGLPAFYRRYPQVPI YATPLTAHLAGGLWERGVWPGYDREIRFPPFRALPFGQAREILPHLMLTFFTAGHLPGAAATLLQNTQTTPAQTCVYTGD CSLASTRFAPGLDLTALRHWQPDVLLIEASLGSTRHPPRRHLENRLVERLLGALAAGQTVLFPLPVLGLGQELIFLLKAH HRFTQASQELTVWVAPGLAAGCNLYERLLPYLPEPVRNFATYQPLFWEDRLQPRVQPLTEADPLPQGLLLCDADAGPEAW DPIWSRLLAQPQRSCLLVRLPEVELATPFDQWPAPLRSRIGVEWLAWHSHNDVGHLTQIVHTFRPQHVVLVHASPQQAQD LADLPELCNRYHVHCPQPGHWLELPDGRLQTQVKPSEFPRDPALRYEGEVEEIWQEQGSPRALAGVQVRLPPQIAQDPRW AAWAETGLVEARWQGSELVLRGLSPRELIRPAGAAPAPAGIVPRPKQPSASTDNGGRKCQNCRFARQILTSQAQAFRCDQ ERSPLYRLRVDPQGSCPYHQPLEIRSSG
Specific function: Unknown
COG id: COG1236
COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ0047, MJ0162 and MJ1236 [H]
Homologues:
Organism=Homo sapiens, GI7706427, Length=431, Percent_Identity=21.1136890951276, Blast_Score=88, Evalue=2e-17, Organism=Caenorhabditis elegans, GI32564696, Length=462, Percent_Identity=23.3766233766234, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI32566029, Length=439, Percent_Identity=22.5512528473804, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648013, Length=438, Percent_Identity=23.2876712328767, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI21358523, Length=440, Percent_Identity=22.2727272727273, Blast_Score=89, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 65848; Mature: 65848
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESERPPLRLFPLGTDPRRQGCAYWLEMGSHRLLLDCGLPASSLFKALPGIPDAVICSHA CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCHHHHHCCC HFDHLQGLPAFYRRYPQVPIYATPLTAHLAGGLWERGVWPGYDREIRFPPFRALPFGQAR CHHHHCCCHHHHHHCCCCCEEECCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHH EILPHLMLTFFTAGHLPGAAATLLQNTQTTPAQTCVYTGDCSLASTRFAPGLDLTALRHW HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCC QPDVLLIEASLGSTRHPPRRHLENRLVERLLGALAAGQTVLFPLPVLGLGQELIFLLKAH CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHCCHHHHHHHHHH HRFTQASQELTVWVAPGLAAGCNLYERLLPYLPEPVRNFATYQPLFWEDRLQPRVQPLTE HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHCCCCCCCCCC ADPLPQGLLLCDADAGPEAWDPIWSRLLAQPQRSCLLVRLPEVELATPFDQWPAPLRSRI CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCHHHHHHC GVEWLAWHSHNDVGHLTQIVHTFRPQHVVLVHASPQQAQDLADLPELCNRYHVHCPQPGH CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCEECCCCCCC WLELPDGRLQTQVKPSEFPRDPALRYEGEVEEIWQEQGSPRALAGVQVRLPPQIAQDPRW EEECCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCEEECEEEECCHHHCCCCCC AAWAETGLVEARWQGSELVLRGLSPRELIRPAGAAPAPAGIVPRPKQPSASTDNGGRKCQ HHHHHCCCEEEECCCCHHEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH NCRFARQILTSQAQAFRCDQERSPLYRLRVDPQGSCPYHQPLEIRSSG HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MESERPPLRLFPLGTDPRRQGCAYWLEMGSHRLLLDCGLPASSLFKALPGIPDAVICSHA CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCHHHHHCCC HFDHLQGLPAFYRRYPQVPIYATPLTAHLAGGLWERGVWPGYDREIRFPPFRALPFGQAR CHHHHCCCHHHHHHCCCCCEEECCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHH EILPHLMLTFFTAGHLPGAAATLLQNTQTTPAQTCVYTGDCSLASTRFAPGLDLTALRHW HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCC QPDVLLIEASLGSTRHPPRRHLENRLVERLLGALAAGQTVLFPLPVLGLGQELIFLLKAH CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHCCHHHHHHHHHH HRFTQASQELTVWVAPGLAAGCNLYERLLPYLPEPVRNFATYQPLFWEDRLQPRVQPLTE HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHCCCCCCCCCC ADPLPQGLLLCDADAGPEAWDPIWSRLLAQPQRSCLLVRLPEVELATPFDQWPAPLRSRI CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCHHHHHHC GVEWLAWHSHNDVGHLTQIVHTFRPQHVVLVHASPQQAQDLADLPELCNRYHVHCPQPGH CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCEECCCCCCC WLELPDGRLQTQVKPSEFPRDPALRYEGEVEEIWQEQGSPRALAGVQVRLPPQIAQDPRW EEECCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCEEECEEEECCHHHCCCCCC AAWAETGLVEARWQGSELVLRGLSPRELIRPAGAAPAPAGIVPRPKQPSASTDNGGRKCQ HHHHHCCCEEEECCCCHHEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH NCRFARQILTSQAQAFRCDQERSPLYRLRVDPQGSCPYHQPLEIRSSG HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]